anatomical entity [CARO_0000000]

A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. Following BFO, material anatomical entities may have immaterial parts (the lumen of your stomach is part of your stomach). The granularity limit follows the limits set by the Gene Ontology on the granularity limit for GO:cellular_component. Note that substances produced by an organism (sweat, feaces, urine) do not need to be part of an organism to qualify as an anatomical structure.

Open anatomical entity in VFB

Example Images

anatomical entity anatomical entity anatomical entity anatomical entity anatomical entity

VFB Term Json

{
    "term": {
        "core": {
            "iri": "http://purl.obolibrary.org/obo/CARO_0000000",
            "symbol": "",
            "types": [
                "Entity",
                "Class"
            ],
            "short_form": "CARO_0000000",
            "label": "anatomical entity"
        },
        "description": [
            "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex.  Or, a substance produced by a cellular organism with granularity above the level of a protein complex."
        ],
        "comment": [
            "Following BFO, material anatomical entities may have immaterial parts (the lumen of your stomach is part of your stomach).  The granularity limit follows the limits set by the Gene Ontology on the granularity limit for GO:cellular_component. Note that substances produced by an organism (sweat, feaces, urine) do not need to be part of an organism to qualify as an anatomical structure."
        ]
    },
    "query": "Get JSON for Class",
    "version": "44725ae",
    "parents": [
        {
            "symbol": "",
            "iri": "http://purl.obolibrary.org/obo/CARO_0030000",
            "types": [
                "Entity",
                "Class"
            ],
            "short_form": "CARO_0030000",
            "label": "biological entity"
        }
    ],
    "relationships": [],
    "xrefs": [],
    "anatomy_channel_image": [
        {
            "anatomy": {
                "symbol": "",
                "iri": "http://virtualflybrain.org/reports/VFB_00104646",
                "types": [
                    "Entity",
                    "Adult",
                    "Anatomy",
                    "Individual",
                    "Nervous_system",
                    "Synaptic_neuropil",
                    "Synaptic_neuropil_domain",
                    "has_image"
                ],
                "short_form": "VFB_00104646",
                "label": "intermediate tectulum on adult VNC, JRC2018VU"
            },
            "channel_image": {
                "image": {
                    "template_channel": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFBc_00200000",
                        "types": [
                            "Entity",
                            "Individual",
                            "Template"
                        ],
                        "short_form": "VFBc_00200000",
                        "label": "JRC2018UnisexVNC_c"
                    },
                    "index": [
                        14
                    ],
                    "template_anatomy": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFB_00200000",
                        "types": [
                            "Entity",
                            "Adult",
                            "Anatomy",
                            "Ganglion",
                            "Individual",
                            "Nervous_system",
                            "Template",
                            "has_image"
                        ],
                        "short_form": "VFB_00200000",
                        "label": "JRC2018UnisexVNC"
                    },
                    "image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/4646/VFB_00200000/"
                },
                "channel": {
                    "symbol": "",
                    "iri": "http://virtualflybrain.org/reports/VFBc_00104644",
                    "types": [
                        "Entity",
                        "Individual"
                    ],
                    "short_form": "VFBc_00104644",
                    "label": "intermediate tectulum on adult VNC, JRC2018VU_c"
                },
                "imaging_technique": {
                    "symbol": "",
                    "iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
                    "types": [
                        "Entity",
                        "Class"
                    ],
                    "short_form": "FBbi_00000224",
                    "label": "computer graphic"
                }
            }
        },
        {
            "anatomy": {
                "symbol": "",
                "iri": "http://virtualflybrain.org/reports/VFB_00104651",
                "types": [
                    "Entity",
                    "Adult",
                    "Anatomy",
                    "Individual",
                    "Nervous_system",
                    "Synaptic_neuropil",
                    "Synaptic_neuropil_domain",
                    "has_image"
                ],
                "short_form": "VFB_00104651",
                "label": "neck tectulum on adult VNC, JRC2018VU"
            },
            "channel_image": {
                "image": {
                    "template_channel": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFBc_00200000",
                        "types": [
                            "Entity",
                            "Individual",
                            "Template"
                        ],
                        "short_form": "VFBc_00200000",
                        "label": "JRC2018UnisexVNC_c"
                    },
                    "index": [
                        19
                    ],
                    "template_anatomy": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFB_00200000",
                        "types": [
                            "Entity",
                            "Adult",
                            "Anatomy",
                            "Ganglion",
                            "Individual",
                            "Nervous_system",
                            "Template",
                            "has_image"
                        ],
                        "short_form": "VFB_00200000",
                        "label": "JRC2018UnisexVNC"
                    },
                    "image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/4651/VFB_00200000/"
                },
                "channel": {
                    "symbol": "",
                    "iri": "http://virtualflybrain.org/reports/VFBc_00104649",
                    "types": [
                        "Entity",
                        "Individual"
                    ],
                    "short_form": "VFBc_00104649",
                    "label": "neck tectulum on adult VNC, JRC2018VU_c"
                },
                "imaging_technique": {
                    "symbol": "",
                    "iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
                    "types": [
                        "Entity",
                        "Class"
                    ],
                    "short_form": "FBbi_00000224",
                    "label": "computer graphic"
                }
            }
        },
        {
            "anatomy": {
                "symbol": "",
                "iri": "http://virtualflybrain.org/reports/VFB_00030875",
                "types": [
                    "Entity",
                    "Adult",
                    "Anatomy",
                    "Individual",
                    "Nervous_system",
                    "Synaptic_neuropil",
                    "Synaptic_neuropil_domain",
                    "VFB",
                    "has_image"
                ],
                "short_form": "VFB_00030875",
                "label": "lobe system of adult mushroom body on adult brain template JFRC2"
            },
            "channel_image": {
                "image": {
                    "template_channel": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFBc_00017894",
                        "types": [
                            "Entity",
                            "Individual",
                            "Template",
                            "VFB"
                        ],
                        "short_form": "VFBc_00017894",
                        "label": "JFRC2_template_c"
                    },
                    "index": [
                        112
                    ],
                    "template_anatomy": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFB_00017894",
                        "types": [
                            "Entity",
                            "Adult",
                            "Anatomy",
                            "Individual",
                            "Nervous_system",
                            "Template",
                            "VFB",
                            "has_image"
                        ],
                        "short_form": "VFB_00017894",
                        "label": "adult brain template JFRC2"
                    },
                    "image_folder": "http://www.virtualflybrain.org/data/VFB/i/0003/0875/"
                },
                "channel": {
                    "symbol": "",
                    "iri": "http://virtualflybrain.org/reports/VFBc_00030875",
                    "types": [
                        "Entity",
                        "Individual",
                        "VFB"
                    ],
                    "short_form": "VFBc_00030875",
                    "label": "MB_L - painted domain JFRC2_c"
                },
                "imaging_technique": {
                    "symbol": "",
                    "iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
                    "types": [
                        "Entity",
                        "Class"
                    ],
                    "short_form": "FBbi_00000224",
                    "label": "computer graphic"
                }
            }
        },
        {
            "anatomy": {
                "symbol": "",
                "iri": "http://virtualflybrain.org/reports/VFB_00100020",
                "types": [
                    "Entity",
                    "Adult",
                    "Anatomy",
                    "Individual",
                    "Nervous_system",
                    "Synaptic_neuropil",
                    "Synaptic_neuropil_domain",
                    "has_image"
                ],
                "short_form": "VFB_00100020",
                "label": "adult accessory mesothoracic neuromere on adult VNS template, Court2018"
            },
            "channel_image": {
                "image": {
                    "template_channel": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFBc_00100000",
                        "types": [
                            "Entity",
                            "Individual",
                            "Template"
                        ],
                        "short_form": "VFBc_00100000",
                        "label": "adult VNS template - Court2018_c"
                    },
                    "index": [
                        20
                    ],
                    "template_anatomy": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFB_00100000",
                        "types": [
                            "Entity",
                            "Adult",
                            "Anatomy",
                            "Ganglion",
                            "Individual",
                            "Nervous_system",
                            "Template",
                            "has_image"
                        ],
                        "short_form": "VFB_00100000",
                        "label": "adult VNS template - Court2018"
                    },
                    "image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0020/"
                },
                "channel": {
                    "symbol": "",
                    "iri": "http://virtualflybrain.org/reports/VFBc_00100020",
                    "types": [
                        "Entity",
                        "Individual"
                    ],
                    "short_form": "VFBc_00100020",
                    "label": "adult accessory mesothoracic neuromere on adult VNS template, Court2018_c"
                },
                "imaging_technique": {
                    "symbol": "",
                    "iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
                    "types": [
                        "Entity",
                        "Class"
                    ],
                    "short_form": "FBbi_00000224",
                    "label": "computer graphic"
                }
            }
        },
        {
            "anatomy": {
                "symbol": "",
                "iri": "http://virtualflybrain.org/reports/VFB_00104644",
                "types": [
                    "Entity",
                    "Adult",
                    "Anatomy",
                    "Individual",
                    "Nervous_system",
                    "Synaptic_neuropil",
                    "Synaptic_neuropil_domain",
                    "has_image"
                ],
                "short_form": "VFB_00104644",
                "label": "adult accessory mesothoracic neuromere on adult VNC, JRC2018VU"
            },
            "channel_image": {
                "image": {
                    "template_channel": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFBc_00200000",
                        "types": [
                            "Entity",
                            "Individual",
                            "Template"
                        ],
                        "short_form": "VFBc_00200000",
                        "label": "JRC2018UnisexVNC_c"
                    },
                    "index": [
                        12
                    ],
                    "template_anatomy": {
                        "symbol": "",
                        "iri": "http://virtualflybrain.org/reports/VFB_00200000",
                        "types": [
                            "Entity",
                            "Adult",
                            "Anatomy",
                            "Ganglion",
                            "Individual",
                            "Nervous_system",
                            "Template",
                            "has_image"
                        ],
                        "short_form": "VFB_00200000",
                        "label": "JRC2018UnisexVNC"
                    },
                    "image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/4644/VFB_00200000/"
                },
                "channel": {
                    "symbol": "",
                    "iri": "http://virtualflybrain.org/reports/VFBc_00104642",
                    "types": [
                        "Entity",
                        "Individual"
                    ],
                    "short_form": "VFBc_00104642",
                    "label": "adult accessory mesothoracic neuromere on adult VNC, JRC2018VU_c"
                },
                "imaging_technique": {
                    "symbol": "",
                    "iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
                    "types": [
                        "Entity",
                        "Class"
                    ],
                    "short_form": "FBbi_00000224",
                    "label": "computer graphic"
                }
            }
        }
    ],
    "pub_syn": [],
    "def_pubs": [
        {
            "core": {
                "symbol": "",
                "iri": "http://flybase.org/reports/Unattributed",
                "types": [
                    "Entity",
                    "Individual",
                    "pub"
                ],
                "short_form": "Unattributed",
                "label": ""
            },
            "FlyBase": "",
            "PubMed": "",
            "DOI": ""
        }
    ]
}