sequence_feature [SO_0000110]

Any extent of continuous biological sequence.

sequence_feature

ID: SO_0000110

Class

Any extent of continuous biological sequence.

A sequence feature is an extent of 'located' biological sequence, whose identity is determined by both its inherent sequence (ordering of monomeric units) and its position (start and end coordinates based on alignment with some reference). By contrast, 'biological sequences' are identified and distinguished only by their inehrent sequence, and not their position. Accordingly, the 'ATG' start codon in the coding DNA sequence of the human AKT gene is the same 'sequence' as the 'ATG' start codon in the human SHH gene, but these represent two distinct 'sequence features' in virtue of their different positions in the genome.

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Classification

Relationships

has_location: sequence feature location
has_sequence: biological sequence

Alternative Names

Synonym	Scope	Reference
INSDC_note:sequence_feature	exact synonym
sequence feature	exact synonym
located_sequence_feature	exact synonym
INSDC_feature:misc_feature	exact synonym
INSDC_note:other	exact synonym
located sequence feature	related synonym

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://purl.obolibrary.org/obo/GENO_0000701", "types": [ "Entity", "Class" ], "short_form": "GENO_0000701", "label": "sequence feature or set" } ], "relationships": [ { "relation": { "iri": "http://purl.obolibrary.org/obo/GENO_0000903", "label": "has_location", "type": "has_location" }, "object": { "symbol": "", "iri": "http://purl.obolibrary.org/obo/GENO_0000815", "types": [ "Entity", "Class" ], "short_form": "GENO_0000815", "label": "sequence feature location" } }, { "relation": { "iri": "http://purl.obolibrary.org/obo/GENO_0000239", "label": "has_sequence", "type": "has_sequence" }, "object": { "symbol": "", "iri": "http://purl.obolibrary.org/obo/GENO_0000702", "types": [ "Entity", "Class" ], "short_form": "GENO_0000702", "label": "biological sequence" } } ], "xrefs": [], "anatomy_channel_image": [], "pub_syn": [ { "synonym": { "scope": "has_exact_synonym", "label": "INSDC_note:other", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "sequence feature", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "located_sequence_feature", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "INSDC_feature:misc_feature", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "INSDC_note:sequence_feature", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_related_synonym", "label": "located sequence feature", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } } ], "def_pubs": [] }

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