qualified genomic feature set [GENO_0000715]

A set of qualified sequence features that carry genomic sequence. A ‘complement’ refers to an exhaustive collection of all objects that make up some well-defined set. This notion is useful for defining biologically-relevant sets of sequence features. For example, a haplotype is defined as the set of all genetically-linked alleles on a single chromosomal strand at a defined location - e.g. the SNP alleles {rs7412-C, rs429358-C} comprise the haplotype defining the APOEɛ4 gene allele. A complements may contain 0, 1, or more than one members. For example, the complement of alleles at a defined locus across homologous chromosomes in an individual’s genome will consist of two members for autosomal locations, and one member for non-homologous locations on the X and Y chromosome.
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Open qualified genomic feature set in VFB

VFB Term Json

{
    "term": {
        "core": {
            "iri": "http://purl.obolibrary.org/obo/GENO_0000715",
            "symbol": "",
            "types": [
                "Entity",
                "Class"
            ],
            "short_form": "GENO_0000715",
            "label": "qualified genomic feature set"
        },
        "description": [
            "A set of qualified sequence features that carry genomic sequence."
        ],
        "comment": [
            "A 'complement' refers to an exhaustive collection of all objects that make up some well-defined set. This notion is useful for defining biologically-relevant sets of sequence features. For example, a haplotype is defined as the set of all genetically-linked alleles on a single chromosomal strand at a defined location - e.g. the SNP alleles {rs7412-C, rs429358-C} comprise the haplotype defining the APOE\u025b4 gene allele.\n\nA complements may contain 0, 1, or more than one members. For example, the complement of alleles at a defined locus across homologous chromosomes in an individual's genome will consist of two members for autosomal locations, and one member for non-homologous locations on the X and Y chromosome."
        ]
    },
    "query": "Get JSON for Class",
    "version": "44725ae",
    "parents": [
        {
            "symbol": "",
            "iri": "http://purl.obolibrary.org/obo/GENO_0000920",
            "types": [
                "Entity",
                "Class"
            ],
            "short_form": "GENO_0000920",
            "label": "qualified sequence feature set"
        },
        {
            "symbol": "",
            "iri": "http://purl.obolibrary.org/obo/GENO_0000897",
            "types": [
                "Entity",
                "Class"
            ],
            "short_form": "GENO_0000897",
            "label": "genomic entity"
        }
    ],
    "relationships": [
        {
            "relation": {
                "iri": "http://purl.obolibrary.org/obo/GENO_0000726",
                "label": "has_sequence_feature",
                "type": "has_sequence_feature"
            },
            "object": {
                "symbol": "",
                "iri": "http://purl.obolibrary.org/obo/GENO_0000660",
                "types": [
                    "Entity",
                    "Class"
                ],
                "short_form": "GENO_0000660",
                "label": "genomic feature set"
            }
        },
        {
            "relation": {
                "iri": "http://purl.obolibrary.org/obo/RO_0002351",
                "label": "has_member",
                "type": "has_member"
            },
            "object": {
                "symbol": "",
                "iri": "http://purl.obolibrary.org/obo/GENO_0000714",
                "types": [
                    "Entity",
                    "Class"
                ],
                "short_form": "GENO_0000714",
                "label": "qualified genomic feature"
            }
        }
    ],
    "xrefs": [],
    "anatomy_channel_image": [],
    "pub_syn": [],
    "def_pubs": [
        {
            "core": {
                "symbol": "",
                "iri": "http://flybase.org/reports/Unattributed",
                "types": [
                    "Entity",
                    "Individual",
                    "pub"
                ],
                "short_form": "Unattributed",
                "label": ""
            },
            "FlyBase": "",
            "PubMed": "",
            "DOI": ""
        }
    ]
}