VFB Content Report

An auto generated report detailing the current types and quantity of images and annotations currently publicly available on VFB. This will update after a new data release.

VFB Content Report 2023-02-06

Report of content found at http://pdb.virtualflybrain.org on Mon, 06 Feb 2023 00:10:27

Ontology Content

Anatomy Classes Publications
All Terms 19658 1541
All Nervous System Parts 13418 1068
All Neurons 9885 787
Characterised Neurons 6021 787
Provisional Neurons 3864 9
All Nervous System Regions 1408 246
Synaptic Neuropils 610 137
Neuron Projection Bundles 583 125
Cell Body Rinds 132 8
Sense Organs 845 151

101704 formal assertions, of which 28417 are SubClassOf assertions and 73287 are other relationship types

89379 formal assertions on nervous system components, of which 21233 are SubClassOf assertions and 68146 are other relationship types

Image Content
(excludes hemibrain v1.0.1)

126587 total images from 99 datasets
49074 single neuron images of 5820 cell types
43695 images of expression patterns of 16876 drivers
2737 images of expression patterns of 579 split combinations
49038 images of expression pattern fragments of 4601 drivers

Annotations

115634 annotations recording 3958 types of anatomical structure that 17308 specific driver lines are expressed in.
99368 annotations recording 2897 parts of the nervous system that 14693 specific driver lines are expressed in.
17262 annotations recording 1857 types of neuron that 4794 specific driver lines are expressed in.
6034 annotations recording 686 types of neuron that 1508 specific split combinations are expressed in.

Connectivity

Neuron Number of Neurons Input/Output Entity Number of Entities Connections
Any neuron (individuals) 28729 Any neuron (individuals) 28729 3462820
Any neuron (individuals) 22590 Region (individuals) 218 299710
Any neuron (classes) 309 Muscle (classes) 248 294
Any neuron (classes) 760 Sense organ (classes) 396 495

Content by Template
(excludes hemibrain v1.0.1)

Template Name Datasets Images Single Neurons EM Neurons Full Expression Patterns Split Expression Patterns Partial Expression Patterns Painted domains
Adult Head (McKellar2020) 1 18 0 0 0 0 0 0
adult VNS template - Court2018 10 3217 1 0 3193 494 0 22
JRC_FlyEM_Hemibrain 2 22701 22588 22587 0 0 0 114
JRC2018Unisex 64 98239 43576 26797 31655 1632 38796 46
L1 larval CNS ssTEM - Cardona/Janelia 22 3463 3463 3463 0 0 0 0
JRC2018UnisexVNC 21 20604 2030 2029 8314 625 10240 21
adult brain template Ito2014 1 75 1 0 0 0 0 75
L3 CNS template - Wood2018 2 257 2 0 0 0 2 255
adult brain template JFRC2 21 41940 16299 0 25272 600 16127 58