VFB Content Report

An auto generated report detailing the current types and quantity of images and annotations currently publicly available on VFB. This will update after a new data release.

VFB Content Report 2024-06-04

Report of content found at http://pdb.virtualflybrain.org on Tue, 04 Jun 2024 00:44:00

Ontology Content

Anatomy Classes Publications
All Terms 20111 1610
All Nervous System Parts 13794 1128
All Neurons 10092 839
Characterised Neurons 6228 839
Provisional Neurons 3864 10
All Nervous System Regions 1428 253
Synaptic Neuropils 624 141
Neuron Projection Bundles 590 129
Cell Body Rinds 132 8
Sense Organs 852 156

104417 formal assertions, of which 31158 are SubClassOf assertions and 73259 are other relationship types

91566 formal assertions on nervous system components, of which 23549 are SubClassOf assertions and 68017 are other relationship types

Image Content
(excludes hemibrain v1.0.1)

155010 total images from 108 datasets
77282 single neuron images of 5929 cell types
43695 images of expression patterns of 16876 drivers
2737 images of expression patterns of 579 split combinations
49038 images of expression pattern fragments of 4601 drivers

Annotations

216386 annotations recording 4129 types of anatomical structure that 17882 specific driver lines are expressed in.
181935 annotations recording 3055 parts of the nervous system that 15217 specific driver lines are expressed in.
25778 annotations recording 2014 types of neuron that 5377 specific driver lines are expressed in.
6770 annotations recording 793 types of neuron that 1898 specific split combinations are expressed in.

Connectivity

Neuron Number of Neurons Input/Output Entity Number of Entities Connections
Any neuron (individuals) 30777 Any neuron (individuals) 30777 3499052
Any neuron (individuals) 22585 Region (individuals) 218 299683
Any neuron (classes) 324 Muscle (classes) 227 248
Any neuron (classes) 787 Sense organ (classes) 412 510

Content by Template
(excludes hemibrain v1.0.1)

Template Name Datasets Images Single Neurons EM Neurons Full Expression Patterns Split Expression Patterns Partial Expression Patterns Painted domains
Adult Head (McKellar2020) 1 18 0 0 0 0 0 0
adult VNS template - Court2018 10 3217 1 0 3193 494 0 22
JRC_FlyEM_Hemibrain 2 22701 22588 22587 0 0 0 114
JRC2018Unisex 67 100516 45853 29074 31655 1632 38796 46
L1 larval CNS ssTEM - Cardona/Janelia 24 5019 5019 5019 0 0 0 0
JRC2018UnisexVNC 22 44363 25789 2029 8314 625 10240 23780
adult brain template Ito2014 1 75 1 0 0 0 0 75
L3 CNS template - Wood2018 2 257 2 0 0 0 2 255
Adult T1 Leg (Kuan2020) 2 678 464 0 0 0 0 4
adult brain template JFRC2 21 41940 16299 0 25272 600 16127 58