VFB Content Report

An auto generated report detailing the current types and quantity of images and annotations currently publicly available on VFB. This will update after a new data release.
Tags:

VFB Content Report 2023-09-18

Report of content found at http://pdb.virtualflybrain.org on Mon, 18 Sep 2023 00:42:06

Ontology Content

Anatomy Classes Publications
All Terms 19955 1578
All Nervous System Parts 13666 1101
All Neurons 9980 814
Characterised Neurons 6116 814
Provisional Neurons 3864 9
All Nervous System Regions 1415 250
Synaptic Neuropils 615 139
Neuron Projection Bundles 586 128
Cell Body Rinds 132 8
Sense Organs 852 155

102520 formal assertions, of which 29592 are SubClassOf assertions and 72928 are other relationship types

90123 formal assertions on nervous system components, of which 22412 are SubClassOf assertions and 67711 are other relationship types

Image Content
(excludes hemibrain v1.0.1)

127395 total images from 105 datasets
49684 single neuron images of 5901 cell types
43695 images of expression patterns of 16876 drivers
2737 images of expression patterns of 579 split combinations
49038 images of expression pattern fragments of 4601 drivers

Annotations

116551 annotations recording 4029 types of anatomical structure that 17464 specific driver lines are expressed in.
100087 annotations recording 2959 parts of the nervous system that 14820 specific driver lines are expressed in.
17928 annotations recording 1921 types of neuron that 4962 specific driver lines are expressed in.
6352 annotations recording 731 types of neuron that 1575 specific split combinations are expressed in.

Connectivity

Neuron Number of Neurons Input/Output Entity Number of Entities Connections
Any neuron (individuals) 29052 Any neuron (individuals) 29052 3466784
Any neuron (individuals) 22590 Region (individuals) 218 299710
Any neuron (classes) 324 Muscle (classes) 227 248
Any neuron (classes) 777 Sense organ (classes) 413 513

Content by Template
(excludes hemibrain v1.0.1)

Template Name Datasets Images Single Neurons EM Neurons Full Expression Patterns Split Expression Patterns Partial Expression Patterns Painted domains
Adult Head (McKellar2020) 2 18 0 0 0 0 0 0
adult VNS template - Court2018 10 3217 1 0 3193 494 0 22
JRC_FlyEM_Hemibrain 2 22701 22588 22587 0 0 0 114
JRC2018Unisex 65 98142 43479 26700 31655 1632 38796 46
L1 larval CNS ssTEM - Cardona/Janelia 24 3565 3565 3565 0 0 0 0
JRC2018UnisexVNC 21 20604 2030 2029 8314 625 10240 21
adult brain template Ito2014 1 75 1 0 0 0 0 75
L3 CNS template - Wood2018 2 257 2 0 0 0 2 255
Adult T1 Leg (Kuan2020) 2 650 453 0 0 0 0 4
adult brain template JFRC2 21 41940 16299 0 25272 600 16127 58