Text search and query tools and how to explore the 3D images.
Canonical templates not only allow for spatial alignment of image data but also are often painted to make a reference atlas of anatomical regions.
The official template for the BrainName nomnclature and accompanying painted domains for the Brain Name nomenclature (Ito et al., 2014). This ticolor brain feautres a presynaptic marker (n-syb-GFP, green), a post synaptic marker (GABA receptor targeted Rdl-HA receptor, blue) and a cytoplasmic marker (Cytoplasmic DsRed, red).
An adult brain template created by Arnim Jenett (Janelia Research Campus) and painted according the the BrainName standard by Arnim Jenett, Kazunori Shinomiya and Kei Ito (Tokyo University) from a staining with the neuropil marker nc82. The image was captured at 20x magnification. The voxel size is 0.62x0.62x0.62 micron.
[adult ventral nerve cord; adult VNS template - Court2018]
Janelia 2018 unisex, averaged adult brain template
[adult ventral nerve cord; JRC2018UnisexVNC]
Synapse segmentation from JRC_FlyEM_Hemibrain (V1 Jan 2020).
[VFB CATMAID L1 CNS; L1 larval CNS ssTEM - Cardona/Janelia; embryonic/larval central nervous system]
[L3 CNS template - Wood2018; embryonic/larval central nervous system]