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Information Artifact Ontology (IAO)
The Information Artifact Ontology (IAO) is an ontology of information entities, originally driven by work by the OBI digital entity and realizable information entity branch.
- 1: analysis subset ontology module [IAO_8000008]
- 2: base ontology module [IAO_8000001]
- 3: bridge ontology module [IAO_8000004]
- 4: curation status specification [IAO_0000078]
- 5: curation subset ontology module [IAO_8000007]
- 6: data about an ontology part [IAO_0000102]
- 7: data item [IAO_0000027]
- 8: denotator type [IAO_0000409]
- 9: editors ontology module [IAO_8000002]
- 10: EL++ ontology module [IAO_8000020]
- 11: exclusion subset ontology module [IAO_8000010]
- 12: external import ontology module [IAO_8000011]
- 13: generated ontology module [IAO_8000014]
- 14: IAO_0000005 [IAO_0000005]
- 15: IAO_0000104 [IAO_0000104]
- 16: import ontology module [IAO_8000005]
- 17: information content entity [IAO_0000030]
- 18: main release ontology module [IAO_8000003]
- 19: obo basic subset ontology module [IAO_8000018]
- 20: obsolescence reason specification [IAO_0000225]
- 21: ontology module [IAO_8000000]
- 22: ontology module subsetted by expressivity [IAO_8000017]
- 23: ontology module subsetted by OWL profile [IAO_8000019]
- 24: reasoned ontology module [IAO_8000013]
- 25: single layer subset ontology module [IAO_8000009]
- 26: species subset ontology module [IAO_8000012]
- 27: subset ontology module [IAO_8000006]
- 28: taxonomic bridge ontology module [IAO_8000016]
- 29: template generated ontology module [IAO_8000015]
1 - analysis subset ontology module [IAO_8000008]
An ontology module that is intended for usage in analysis or discovery applications.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen analysis subset ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000008",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000008",
"label": "analysis subset ontology module"
},
"description": [
"An ontology module that is intended for usage in analysis or discovery applications."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000006",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000006",
"label": "subset ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
2 - base ontology module [IAO_8000001]
An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen base ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000001",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000001",
"label": "base ontology module"
},
"description": [
"An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000000",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000000",
"label": "ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
3 - bridge ontology module [IAO_8000004]
An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen bridge ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000004",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000004",
"label": "bridge ontology module"
},
"description": [
"An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000000",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000000",
"label": "ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
4 - curation status specification [IAO_0000078]
The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen curation status specification in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_0000078",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_0000078",
"label": "curation status specification"
},
"description": [
"The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_0000102",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_0000102",
"label": "data about an ontology part"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
5 - curation subset ontology module [IAO_8000007]
A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen curation subset ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000007",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000007",
"label": "curation subset ontology module"
},
"description": [
"A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000006",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000006",
"label": "subset ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
6 - data about an ontology part [IAO_0000102]
Data about an ontology part is a data item about a part of an ontology, for example a term
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen data about an ontology part in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_0000102",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_0000102",
"label": "data about an ontology part"
},
"description": [
"Data about an ontology part is a data item about a part of an ontology, for example a term"
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_0000027",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_0000027",
"label": "data item"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
7 - data item [IAO_0000027]
a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerVFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_0000027",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_0000027",
"label": "data item"
},
"description": [
"a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_0000030",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_0000030",
"label": "information content entity"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
8 - denotator type [IAO_0000409]
A denotator type indicates how a term should be interpreted from an ontological perspective.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerVFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_0000409",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_0000409",
"label": "denotator type"
},
"description": [
"A denotator type indicates how a term should be interpreted from an ontological perspective."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_0000102",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_0000102",
"label": "data about an ontology part"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
9 - editors ontology module [IAO_8000002]
An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen editors ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000002",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000002",
"label": "editors ontology module"
},
"description": [
"An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000000",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000000",
"label": "ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
10 - EL++ ontology module [IAO_8000020]
[ontology module subsetted by OWL profile; EL++ ontology module]
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen EL++ ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000020",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000020",
"label": "EL++ ontology module"
},
"description": [],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000019",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000019",
"label": "ontology module subsetted by OWL profile"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": []
}
11 - exclusion subset ontology module [IAO_8000010]
A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen exclusion subset ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000010",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000010",
"label": "exclusion subset ontology module"
},
"description": [
"A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000006",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000006",
"label": "subset ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
12 - external import ontology module [IAO_8000011]
An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen external import ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000011",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000011",
"label": "external import ontology module"
},
"description": [
"An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000005",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000005",
"label": "import ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
13 - generated ontology module [IAO_8000014]
An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen generated ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000014",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000014",
"label": "generated ontology module"
},
"description": [
"An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000000",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000000",
"label": "ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
14 - IAO_0000005 [IAO_0000005]
[IAO_0000005]
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerTerm Information
- ID: IAO_0000005
- Name: IAO_0000005
- Definition:
- Synonyms:
- Type:
- Comment: [IAO_0000005]
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_0000005",
"symbol": "",
"types": [
"Entity",
"Class",
"has_subClass"
],
"short_form": "IAO_0000005",
"unique_facets": [
"Class"
],
"label": "IAO_0000005"
},
"description": [],
"comment": []
},
"query": "Get JSON for Class",
"version": "3b19da3",
"parents": [],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": []
}
15 - IAO_0000104 [IAO_0000104]
[IAO_0000104]
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerTerm Information
- ID: IAO_0000104
- Name: IAO_0000104
- Definition:
- Synonyms:
- Type:
- Comment: [IAO_0000104]
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_0000104",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_0000104",
"unique_facets": [
"Class"
],
"label": "IAO_0000104"
},
"description": [],
"comment": []
},
"query": "Get JSON for Class",
"version": "3b19da3",
"parents": [],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": []
}
16 - import ontology module [IAO_8000005]
A subset ontology module that is intended to be imported from another ontology.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen import ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000005",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000005",
"label": "import ontology module"
},
"description": [
"A subset ontology module that is intended to be imported from another ontology."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000006",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000006",
"label": "subset ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
17 - information content entity [IAO_0000030]
an information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen information content entity in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_0000030",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_0000030",
"label": "information content entity"
},
"description": [
"an information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity"
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/BFO_0000031",
"types": [
"Entity",
"Class"
],
"short_form": "BFO_0000031",
"label": "generically dependent continuant"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
18 - main release ontology module [IAO_8000003]
An ontology module that is intended to be the primary release product and the one consumed by the majority of tools.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen main release ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000003",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000003",
"label": "main release ontology module"
},
"description": [
"An ontology module that is intended to be the primary release product and the one consumed by the majority of tools."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000000",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000000",
"label": "ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
19 - obo basic subset ontology module [IAO_8000018]
A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools. Examples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses). An ontology is OBO Basic if and only if it has the following characteristics: DAG Unidirectional No Dangling Clauses Fully Asserted Fully Labeled No equivalence axioms Singly labeled edges No qualifier lists No disjointness axioms No owl-axioms header No imports
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen obo basic subset ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000018",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000018",
"label": "obo basic subset ontology module"
},
"description": [
"A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools.\n\nExamples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses).\n\nAn ontology is OBO Basic if and only if it has the following characteristics:\nDAG\nUnidirectional\nNo Dangling Clauses\nFully Asserted\nFully Labeled\nNo equivalence axioms\nSingly labeled edges\nNo qualifier lists\nNo disjointness axioms\nNo owl-axioms header\nNo imports"
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000017",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000017",
"label": "ontology module subsetted by expressivity"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
20 - obsolescence reason specification [IAO_0000225]
The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen obsolescence reason specification in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_0000225",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_0000225",
"label": "obsolescence reason specification"
},
"description": [
"The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_0000102",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_0000102",
"label": "data about an ontology part"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
21 - ontology module [IAO_8000000]
[ontology module; data about an ontology part]
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerVFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000000",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000000",
"label": "ontology module"
},
"description": [],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_0000102",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_0000102",
"label": "data about an ontology part"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": []
}
22 - ontology module subsetted by expressivity [IAO_8000017]
[subset ontology module; ontology module subsetted by expressivity]
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen ontology module subsetted by expressivity in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000017",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000017",
"label": "ontology module subsetted by expressivity"
},
"description": [],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000006",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000006",
"label": "subset ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": []
}
23 - ontology module subsetted by OWL profile [IAO_8000019]
[ontology module subsetted by OWL profile; ontology module subsetted by expressivity]
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen ontology module subsetted by OWL profile in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000019",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000019",
"label": "ontology module subsetted by OWL profile"
},
"description": [],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000017",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000017",
"label": "ontology module subsetted by expressivity"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": []
}
24 - reasoned ontology module [IAO_8000013]
An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen reasoned ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000013",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000013",
"label": "reasoned ontology module"
},
"description": [
"An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000000",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000000",
"label": "ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
25 - single layer subset ontology module [IAO_8000009]
A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen single layer subset ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000009",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000009",
"label": "single layer subset ontology module"
},
"description": [
"A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000006",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000006",
"label": "subset ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
26 - species subset ontology module [IAO_8000012]
A subset ontology that is crafted to either include or exclude a taxonomic grouping of species.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen species subset ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000012",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000012",
"label": "species subset ontology module"
},
"description": [
"A subset ontology that is crafted to either include or exclude a taxonomic grouping of species."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000006",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000006",
"label": "subset ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
27 - subset ontology module [IAO_8000006]
An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen subset ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000006",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000006",
"label": "subset ontology module"
},
"description": [
"An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000000",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000000",
"label": "ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
28 - taxonomic bridge ontology module [IAO_8000016]
[taxonomic bridge ontology module]
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen taxonomic bridge ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000016",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000016",
"label": "taxonomic bridge ontology module"
},
"description": [],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000004",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000004",
"label": "bridge ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": []
}
29 - template generated ontology module [IAO_8000015]
An ontology module that is automatically generated from a template specification and fillers for slots in that template.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen template generated ontology module in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/IAO_8000015",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000015",
"label": "template generated ontology module"
},
"description": [
"An ontology module that is automatically generated from a template specification and fillers for slots in that template."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/IAO_8000014",
"types": [
"Entity",
"Class"
],
"short_form": "IAO_8000014",
"label": "generated ontology module"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}