start_lost [SO_0002012]

A codon variant that changes at least one base of the canonical start codon.

start_lost

ID: SO_0002012

Class

A codon variant that changes at least one base of the canonical start codon.

Request from Uma Devi Paila, UVA. This term should not be applied to incomplete transcripts.

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Classification

Alternative Names

Synonym	Scope	Reference
Jannovar:start_lost	exact synonym	//doc-openbio.readthedocs.org/projects/jannovar/en/master/var_effects.html
snpEff:START_LOST	exact synonym	VAR
VEP:start_lost	exact synonym	VAR

References

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"synonym": { "scope": "has_exact_synonym", "label": "VEP:start_lost", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "snpEff:START_LOST", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } } ], "def_pubs": [ { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } ] }

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