sequence_variant_causing_initiator_codon_change_in_transcript [SO_1000055]
The DNA mutation changes, usually destroys, the first coding triplet of a gene. Usually prevents translation although another initiator codon may be used. OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen sequence_variant_causing_initiator_codon_change_in_transcript in VFB
Term Information
- ID: SO_1000055
- Name: sequence_variant_causing_initiator_codon_change_in_transcript
- Definition: The DNA mutation changes, usually destroys, the first coding triplet of a gene. Usually prevents translation although another initiator codon may be used.
- Synonyms:
- Type:
- Comment: OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect.
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/SO_1000055",
"symbol": "",
"types": [
"Entity",
"Class",
"Deprecated"
],
"short_form": "SO_1000055",
"unique_facets": [
"Deprecated"
],
"label": "sequence_variant_causing_initiator_codon_change_in_transcript"
},
"description": [
"The DNA mutation changes, usually destroys, the first coding triplet of a gene. Usually prevents translation although another initiator codon may be used."
],
"comment": [
"OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect."
]
},
"query": "Get JSON for Class",
"version": "c58c844",
"parents": [],
"relationships": [],
"related_individuals": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/IAO_0100001",
"database_cross_reference": [],
"label": "term replaced by",
"type": "term_replaced_by",
"confidence_value": ""
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/SO_0001582",
"types": [
"Entity",
"Class",
"has_subClass"
],
"short_form": "SO_0001582",
"unique_facets": [
"Class"
],
"label": "Initiating Methionine"
}
}
],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [
{
"synonym": {
"scope": "has_exact_synonym",
"label": "sequence variant causing initiator codon change in transcript",
"type": ""
},
"pub": {
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"unique_facets": [
"pub"
],
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
},
{
"synonym": {
"scope": "has_related_synonym",
"label": "mutation causing initiator codon change in transcript",
"type": ""
},
"pub": {
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"unique_facets": [
"pub"
],
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
}
],
"def_pubs": []
}
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.