pseudogenic_transcript [SO_0000516]

A non functional descendant of a transcript, part of a pseudogene.

pseudogenic_transcript

ID: SO_0000516

Class

A non functional descendant of a transcript, part of a pseudogene.

This is the analog of the transcript of a functional gene. The term was requested by Rama - SGD to allow the annotation of the parts of a pseudogene. Non-functional is defined as either its transcription or translation (or both) are prevented due to one or more mutations.

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Classification

pseudogenic_region

Relationships

is part of: pseudogene
non_functional_homolog_of: transcript

Alternative Names

Synonym	Scope	Reference
INSDC_feature:misc_RNA	broad synonym
INSDC_qualifier:pseudo	exact synonym
pseudogenic transcript	exact synonym

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}, "object": { "symbol": "", "iri": "http://purl.obolibrary.org/obo/SO_0000336", "types": [ "Entity", "Class" ], "short_form": "SO_0000336", "label": "pseudogene" } }, { "relation": { "iri": "http://purl.obolibrary.org/obo/so#non_functional_homolog_of", "label": "non_functional_homolog_of", "type": "non_functional_homolog_of" }, "object": { "symbol": "", "iri": "http://purl.obolibrary.org/obo/SO_0000673", "types": [ "Entity", "Class" ], "short_form": "SO_0000673", "label": "transcript" } } ], "xrefs": [], "anatomy_channel_image": [], "pub_syn": [ { "synonym": { "scope": "has_broad_synonym", "label": "INSDC_feature:misc_RNA", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "pseudogenic transcript", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "INSDC_qualifier:pseudo", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } } ], "def_pubs": [ { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } ] }

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