novel replicon [GENO_0000684]

A genomic feature that represents an entirely new replicon in the genome, e.g. an extrachromosomal replicon or an extra copy of a chromosome. Novel replicons are considered as an ‘insertion’ in a genome, and as such, qualify as types of sequence_alterations and variant alleles. There is no pre-existing locus that it modifies, however, and thus it is not really an ‘allele of’ a named locus. But conceptually, we still consider these to represent genetic variants and classify them as variant alleles.

Open novel replicon in VFB

VFB Term Json

{
    "term": {
        "core": {
            "iri": "http://purl.obolibrary.org/obo/GENO_0000684",
            "symbol": "",
            "types": [
                "Entity",
                "Class"
            ],
            "short_form": "GENO_0000684",
            "label": "novel replicon"
        },
        "description": [
            "A genomic feature that represents an entirely new replicon in the genome, e.g. an extrachromosomal replicon or an extra copy of a chromosome."
        ],
        "comment": [
            "Novel replicons are considered as an 'insertion' in a genome, and as such, qualify as types of sequence_alterations and variant alleles.  There is no pre-existing locus that it modifies, however, and thus it is not really an 'allele of' a named locus.  But conceptually, we still consider these to represent genetic variants and classify them as variant alleles."
        ]
    },
    "query": "Get JSON for Class",
    "version": "44725ae",
    "parents": [
        {
            "symbol": "",
            "iri": "http://purl.obolibrary.org/obo/SO_0001059",
            "types": [
                "Entity",
                "Class"
            ],
            "short_form": "SO_0001059",
            "label": "sequence_alteration"
        }
    ],
    "relationships": [
        {
            "relation": {
                "iri": "http://purl.obolibrary.org/obo/GENO_0000207",
                "label": "has_sequence_attribute",
                "type": "has_sequence_attribute"
            },
            "object": {
                "symbol": "",
                "iri": "http://purl.obolibrary.org/obo/GENO_0000685",
                "types": [
                    "Entity",
                    "Class"
                ],
                "short_form": "GENO_0000685",
                "label": "novel"
            }
        }
    ],
    "xrefs": [],
    "anatomy_channel_image": [],
    "pub_syn": [],
    "def_pubs": [
        {
            "core": {
                "symbol": "",
                "iri": "http://flybase.org/reports/Unattributed",
                "types": [
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                ],
                "short_form": "Unattributed",
                "label": ""
            },
            "FlyBase": "",
            "PubMed": "",
            "DOI": ""
        }
    ]
}