intron_variant [SO_0001627]

A transcript variant occurring within an intron.

intron_variant

ID: SO_0001627

Class

A transcript variant occurring within an intron.

EBI term: Intronic variations - In intron.

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Classification

transcript_variant

Alternative Names

Synonym	Scope	Reference
ANNOVAR:intronic	related synonym	//www.openbioinformatics.org/annovar/annovar_download.html, VAR
Seattleseq:intron-near-splice	related synonym	VAR
intron_	exact synonym	//ftp.ncbi.nih.gov/snp/specs/docsum_3.1.xsd
intron variant	exact synonym
intronic	exact synonym	//ensembl.org/info/docs/variation/index.html
VEP:intron_variant	exact synonym	VAR
VAAST:intron_variant	exact synonym	VAR
Seattleseq:intron	exact synonym	VAR
snpEff:INTRON	exact synonym	VAR
Jannovar:intron_variant	exact synonym	//doc-openbio.readthedocs.org/projects/jannovar/en/master/var_effects.html

References

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span>: "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "intron variant", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "snpEff:INTRON", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "VEP:intron_variant", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_exact_synonym", "label": "VAAST:intron_variant", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_related_synonym", "label": "Seattleseq:intron-near-splice", "type": "" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } }, { "synonym": { "scope": "has_related_synonym", "label": "ANNOVAR:intronic", "type": "http://purl.obolibrary.org/obo/so#VAR" }, "pub": { "core": { "symbol": "", "iri": "http://flybase.org/reports/Unattributed", "types": [ "Entity", "Individual", "pub" ], "short_form": "Unattributed", "label": "" }, "FlyBase": "", "PubMed": "", "DOI": "" } } ], "def_pubs": [] }

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