Tutorials from the Virtual Fly Brain “Hacking the connectome” workshop that was run in collaboration with the Drosophila Connectomics Group based at the Dept of Zoology, University of Cambridge.
Application Programming Interfaces (APIs)
The VFB connect API provides programmatic access to the databases underlying VFB
In this notebook we will focus on neuron skeletons - a.k.a.
Explore how to plot neurons in 2d using and in 3d
pymaid (python-catmaid) lets you interface with a CATMAID server such as those provided by VFB to host published data from the FAFB dataset.
NBLAST is a method to quantify morphological similarity.
The Janelia hemibrain dataset is accessible via neuprint. To programmatically interface with neuprint, we show how to use neuprint-python.
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.