VFB expression pattern RNAseq Ontology for dataset PRJNA480794
type: Ontology
description: An ontology of Drosophila melanogaster driver expression pattern RNAseq data for dataset PRJNA480794. This information is from published datasets taken from GEO.
license: https://creativecommons.org/licenses/by/4.0/

definition
type: AnnotationProperty
IAO_0000111: definition
IAO_0000114: IAO_0000122
definition: A property representing the English language definitions of what NCI means by the concept. They may also include information about the definition's source and attribution in a form that can easily be interpreted by software.
definition: The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
definition: The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
definition: The official definition.
IAO_0000116: 2012-04-05: Barry Smith The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. Can you fix to something like: A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. Alan Ruttenberg Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. On the specifics of the proposed definition: We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
IAO_0000117: PERSON:Daniel Schober
IAO_0000119: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
has exact synonym: DEFINITION
label: textual definition

is a defining property chain axiom where second argument is reflexive
type: AnnotationProperty
definition: If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.

database_cross_reference
type: AnnotationProperty
definition: Reference database or publication source.

label
type: AnnotationProperty
definition: A human readable name for this class.

part of
type: ObjectProperty
sub property of: overlaps
inverse of: has part
type: TransitiveProperty
IAO_0000111: is part of
IAO_0000112: my brain is part of my body (continuant parthood, two material entities)
IAO_0000112: my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)
IAO_0000112: this day is part of this year (occurrent parthood)
definition: a core relation that holds between a part and its whole
IAO_0000116: Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.
IAO_0000116: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
IAO_0000116: Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.
IAO_0000118: part_of
RO_0001900: RO_0001901
RO_0040042: BFO_0000002
RO_0040042: BFO_0000003
RO_0040042: BFO_0000004
RO_0040042: BFO_0000017
RO_0040042: BFO_0000019
RO_0040042: BFO_0000020
RO_0040042: BFO_0000031
in subset: valid for go annotation extension
in subset: valid for go gp2term
in subset: valid for go ontology
in subset: valid for gocam

has part
type: ObjectProperty
sub property of: overlaps
type: TransitiveProperty
IAO_0000111: has part
IAO_0000112: my body has part my brain (continuant parthood, two material entities)
IAO_0000112: my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)
IAO_0000112: this year has part this day (occurrent parthood)
definition: a core relation that holds between a whole and its part
IAO_0000116: Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
IAO_0000116: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
IAO_0000116: Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
IAO_0000118: has_part
RO_0001900: RO_0001901
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam

realized in
type: ObjectProperty
inverse of: realizes
domain: BFO_0000017
range: BFO_0000015
IAO_0000111: realized in
IAO_0000112: this disease is realized in this disease course
IAO_0000112: this fragility is realized in this shattering
IAO_0000112: this investigator role is realized in this investigation
IAO_0000118: is realized by
IAO_0000118: realized_in
IAO_0000600: [copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
comment: Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

realizes
type: ObjectProperty
domain: BFO_0000015
range: BFO_0000017
IAO_0000111: realizes
IAO_0000112: this disease course realizes this disease
IAO_0000112: this investigation realizes this investigator role
IAO_0000112: this shattering realizes this fragility
IAO_0000600: to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
comment: Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

preceded by
type: ObjectProperty
sub property of: ends after
inverse of: precedes
type: TransitiveProperty
domain: BFO_0000003
range: BFO_0000003
property chain axiom: part of
property chain axiom: starts during
property chain axiom: happens during
IAO_0000111: preceded by
definition: x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
IAO_0000116: An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
IAO_0000118: is preceded by
IAO_0000118: preceded_by
source: http://www.obofoundry.org/ro/#OBO_REL:preceded_by
in subset: ro-eco

precedes
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
domain: BFO_0000003
range: BFO_0000003
property chain axiom: part of
property chain axiom: happens during
IAO_0000111: precedes
definition: x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
in subset: ro-eco

substage of
type: ObjectProperty
sub property of: occurrent part of
sub property of: happens during
type: TransitiveProperty
definition: A relation between a developmental stage and another, larger developmental stage during which it happens.
has OBO namespace: relationship
id: FBdv:00018001
comment: Creating this relation as a temporary fix, pending adding the axiom occurrent_part_of subproperty of happens_during to RO.

Axiom
annotated source: substage of
annotated property: definition
annotated target: A relation between a developmental stage and another, larger developmental stage during which it happens.
database_cross_reference: FBC:DPG

has_specified_input
type: ObjectProperty
sub property of: has participant
inverse of: is_specified_input_of
domain: planned process
IAO_0000111: has_specified_input
IAO_0000112: see is_input_of example_of_usage
IAO_0000114: IAO_0000122
definition: The inverse property of is_specified_input_of
IAO_0000116: 8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Larry Hunter
IAO_0000117: PERSON: Melanie Coutot

is_specified_input_of
type: ObjectProperty
sub property of: participates in
range: planned process
IAO_0000111: is_specified_input_of
IAO_0000112: some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay
IAO_0000114: IAO_0000122
definition: A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.
IAO_0000117: Alan Ruttenberg
IAO_0000117: PERSON:Bjoern Peters

has_specified_output
type: ObjectProperty
sub property of: has participant
inverse of: is_specified_output_of
domain: planned process
IAO_0000111: has_specified_output
IAO_0000114: IAO_0000122
definition: The inverse property of is_specified_output_of
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Larry Hunter
IAO_0000117: PERSON: Melanie Courtot

is_specified_output_of
type: ObjectProperty
sub property of: participates in
range: planned process
IAO_0000111: is_specified_output_of
IAO_0000114: IAO_0000122
definition: A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.
IAO_0000117: Alan Ruttenberg
IAO_0000117: PERSON:Bjoern Peters

achieves_planned_objective
type: ObjectProperty
inverse of: objective_achieved_by
domain: planned process
range: IAO_0000005
IAO_0000111: achieves_planned_objective
IAO_0000112: A cell sorting process achieves the objective specification 'material separation objective'
IAO_0000114: IAO_0000120
definition: This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process.
IAO_0000117: BP, AR, PPPB branch
IAO_0000119: PPPB branch derived
IAO_0000232: modified according to email thread from 1/23/09 in accordince with DT and PPPB branch

objective_achieved_by
type: ObjectProperty
domain: IAO_0000005
range: planned process
IAO_0000111: objective_achieved_by
IAO_0000114: IAO_0000122
definition: This relation obtains between an objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process.
IAO_0000117: OBI
IAO_0000119: OBI

characteristic of
type: ObjectProperty
sub property of: characteristic of part of
inverse of: has characteristic
type: FunctionalProperty
IAO_0000111: inheres in
IAO_0000112: this fragility is a characteristic of this vase
IAO_0000112: this red color is a characteristic of this apple
definition: a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.
IAO_0000118: inheres_in
RO_0001900: RO_0001901
comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.

has characteristic
type: ObjectProperty
type: InverseFunctionalProperty
range: BFO_0000020
IAO_0000111: bearer of
IAO_0000112: this apple is bearer of this red color
IAO_0000112: this vase is bearer of this fragility
definition: Inverse of characteristic_of
IAO_0000116: A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.
IAO_0000118: bearer_of
IAO_0000118: is bearer of
RO_0001900: RO_0001901

participates in
type: ObjectProperty
inverse of: has participant
domain: BFO_0000002
range: BFO_0000003
IAO_0000111: participates in
IAO_0000112: this blood clot participates in this blood coagulation
IAO_0000112: this input material (or this output material) participates in this process
IAO_0000112: this investigator participates in this investigation
definition: a relation between a continuant and a process, in which the continuant is somehow involved in the process
IAO_0000118: participates_in

has participant
type: ObjectProperty
domain: BFO_0000003
range: BFO_0000002
property chain axiom: has part
property chain axiom: realizes
property chain axiom: characteristic of
IAO_0000111: has participant
IAO_0000112: this blood coagulation has participant this blood clot
IAO_0000112: this investigation has participant this investigator
IAO_0000112: this process has participant this input material (or this output material)
definition: a relation between a process and a continuant, in which the continuant is somehow involved in the process
IAO_0000116: Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
IAO_0000118: has_participant
source: http://www.obofoundry.org/ro/#OBO_REL:has_participant

is concretized as
type: ObjectProperty
inverse of: concretizes
domain: BFO_0000031
range: BFO_0000020
IAO_0000112: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
IAO_0000112: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
definition: A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants.

concretizes
type: ObjectProperty
domain: BFO_0000020
range: BFO_0000031
IAO_0000112: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
IAO_0000112: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
definition: A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant.

role of
type: ObjectProperty
sub property of: characteristic of
inverse of: has role
IAO_0000112: this investigator role is a role of this person
definition: a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence
IAO_0000116: A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.
IAO_0000118: is role of
IAO_0000118: role_of
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

has role
type: ObjectProperty
sub property of: has characteristic
domain: BFO_0000004
range: BFO_0000023
IAO_0000112: this person has role this investigator role (more colloquially: this person has this role of investigator)
definition: a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence
IAO_0000116: A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.
IAO_0000118: has_role

occurrent part of
type: ObjectProperty
sub property of: part of
sub property of: causally upstream of or within
domain: BFO_0000003
range: BFO_0000003
definition: A part of relation that applies only between occurrents.

during which ends
type: ObjectProperty
sub property of: temporally related to
inverse of: ends during
IAO_0000117: David Osumi-Sutherland
in subset: ro-eco
comment: Previously had ID http://purl.obolibrary.org/obo/RO_0002122 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.

encompasses
type: ObjectProperty
sub property of: during which starts
inverse of: happens during
type: TransitiveProperty
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000118: di
comment: Previously had ID http://purl.obolibrary.org/obo/RO_0002124 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.

ends after
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
property chain axiom: ends during
property chain axiom: preceded by
IAO_0000117: David Osumi-Sutherland
in subset: ro-eco
comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)

immediately preceded by
type: ObjectProperty
sub property of: preceded by
inverse of: immediately precedes
IAO_0000117: David Osumi-Sutherland
IAO_0000118: starts_at_end_of
comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)

during which starts
type: ObjectProperty
sub property of: temporally related to
inverse of: starts during
IAO_0000117: David Osumi-Sutherland
in subset: ro-eco
comment: Previously had ID http://purl.obolibrary.org/obo/RO_0002123 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.

immediately precedes
type: ObjectProperty
sub property of: precedes
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000117: David Osumi-Sutherland
IAO_0000118: ends_at_start_of
IAO_0000118: meets
RO_0002575: precedes
in subset: ro-eco
comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)

starts during
type: ObjectProperty
sub property of: temporally related to
domain: BFO_0000003
range: BFO_0000003
IAO_0000117: David Osumi-Sutherland
IAO_0000118: io
in subset: ro-eco
comment: X starts_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (start(X) before_or_simultaneous_with end(Y))

happens during
type: ObjectProperty
sub property of: starts during
sub property of: ends during
type: TransitiveProperty
IAO_0000117: David Osumi-Sutherland
IAO_0000118: d
IAO_0000118: during
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam
in subset: ro-eco
comment: X happens_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (end(X) before_or_simultaneous_with end(Y))

ends during
type: ObjectProperty
sub property of: temporally related to
IAO_0000117: David Osumi-Sutherland
IAO_0000118: o
IAO_0000118: overlaps
in subset: ro-eco
comment: X ends_during Y iff: ((start(Y) before_or_simultaneous_with end(X)) AND end(X) before_or_simultaneous_with end(Y).

overlaps
type: ObjectProperty
sub property of: mereotopologically related to
type: SymmetricProperty
property chain axiom: part of
property chain axiom: has part
IAO_0000114: IAO_0000125
definition: x overlaps y if and only if there exists some z such that x has part z and z part of y
IAO_0000424: http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)
RO_0001900: RO_0001901
in subset: valid for go annotation extension
in subset: valid for gocam
in subset: ro-eco

Axiom
annotated source: overlaps
annotated property: propertyChainAxiom
annotated target: has part
annotated target: part of
RO_0002582: true

expressed in
type: ObjectProperty
sub property of: genomically related to
inverse of: expresses
domain: BFO_0000002
domain: Class
  union of: BFO_0000031
  union of: BFO_0000040
range: UBERON_0000465
property chain axiom: part of
IAO_0000112: 'neural crest cell' SubClassOf expresses some 'Wnt1 gene'
IAO_0000114: IAO_0000125
definition: x expressed in y if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and the transcription of x is part of the gene expression process (iii) x is a mature gene product such as a protein, and x was translated or otherwise processes from a transcript that was transcribed as part of this gene expression process
IAO_0000117: https://orcid.org/0000-0002-6601-2165

temporally related to
type: ObjectProperty
domain: BFO_0000003
range: BFO_0000003
IAO_0000114: IAO_0000125
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000119: Allen's interval algebra
IAO_0000232: Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.
source: https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit
in subset: ro-eco
comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.

expresses
type: ObjectProperty
sub property of: genomically related to
IAO_0000114: IAO_0000125
definition: y expresses x if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and x was transcribed from a gene as part of the gene expression process (iii) x is a mature gene product (protein or RNA), and x was translated or otherwise processed from a transcript that was transcribed as part of the gene expression process.
IAO_0000117: https://orcid.org/0000-0002-6601-2165

characteristic of part of
type: ObjectProperty
sub property of: depends on
property chain axiom: characteristic of
property chain axiom: part of
definition: q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.
IAO_0000116: Because part_of is transitive, inheres in is a sub-relation of characteristic of part of
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000118: inheres in part of
IAO_0000119: http://www.ncbi.nlm.nih.gov/pubmed/20064205
RO_0001900: RO_0001901

Axiom
annotated source: characteristic of part of
annotated property: propertyChainAxiom
annotated target: characteristic of
annotated target: part of
RO_0002582: true

mereotopologically related to
type: ObjectProperty
definition: A mereological relationship or a topological relationship
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships
RO_0001900: RO_0001901

genomically related to
type: ObjectProperty
domain: BFO_0000002
range: BFO_0000002
definition: holds between two entities when some genome-level process such as gene expression is involved. This includes transcriptional, spliceosomal events. These relations can be used between either macromolecule entities (such as regions of nucleic acid) or between their abstract informational counterparts.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving the genome of an organism

member of
type: ObjectProperty
sub property of: part of
inverse of: has member
IAO_0000112: An organism that is a member of a population of organisms
definition: is member of is a mereological relation between a item and a collection.
IAO_0000118: is member of
IAO_0000118: member part of
IAO_0000119: SIO
RO_0001900: RO_0001901

has member
type: ObjectProperty
sub property of: has part
definition: has member is a mereological relation between a collection and an item.
IAO_0000119: SIO
RO_0001900: RO_0001901

causally related to
type: ObjectProperty
definition: relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.
IAO_0000116: This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. To define causal relations in an activity-flow type network, we make use of 3 primitives: * Temporal: how do the intervals of the two occurrents relate? * Is the causal relation regulatory? * Is the influence positive or negative? The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. Each of these 3 primitives can be composed to yie…
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

Axiom
annotated source: causally related to
annotated property: definition
annotated target: relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.
database_cross_reference: https://en.wikipedia.org/wiki/Causality

causally upstream of or within
type: ObjectProperty
sub property of: causal relation between processes
inverse of: causally downstream of or within
type: TransitiveProperty
definition: p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q.
IAO_0000116: We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000118: influences (processual)
has related synonym: affects

causally downstream of or within
type: ObjectProperty
sub property of: causal relation between processes
type: TransitiveProperty
definition: inverse of causally upstream of or within
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000119: causal-relations
in subset: RO_0002259

relation between physical entity and a process or stage
type: ObjectProperty
domain: BFO_0000004
range: BFO_0000003
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, typically connecting an anatomical entity to a biological process or developmental stage.

existence overlaps
type: ObjectProperty
sub property of: relation between physical entity and a process or stage
definition: x existence overlaps y if and only if either (a) the start of x is part of y or (b) the end of x is part of y. Formally: x existence starts and ends during y iff (α(x) >= α(y) & α(x) <= ω(y)) OR (ω(x) <= ω(y) & ω(x) >= α(y))
IAO_0000117: https://orcid.org/0000-0002-6601-2165
comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.

causal relation between processes
type: ObjectProperty
sub property of: causally related to
domain: BFO_0000003
range: BFO_0000003
definition: p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000119: causal-relations
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

depends on
type: ObjectProperty
IAO_0000117: https://orcid.org/0000-0002-6601-2165

generically depends on
type: ObjectProperty
inverse of: is carrier of
domain: BFO_0000031
range: BFO_0000004
property chain axiom: characteristic of
property chain axiom: is concretized as
IAO_0000112: Genetic information generically depend on molecules of DNA.
IAO_0000112: The novel *War and Peace* generically depends on this copy of the novel.
IAO_0000112: The pattern shared by chess boards generically depends on any chess board.
IAO_0000112: The score of a symphony g-depends on a copy of the score.
IAO_0000112: This pdf file generically depends on this server.
definition: A generically dependent continuant *b* generically depends on an independent continuant *c* at time *t* means: there inheres in *c* a specifically deendent continuant which concretizes *b* at *t*.
IAO_0000119: [072-ISO]
has exact synonym: g-depends on

is carrier of
type: ObjectProperty
domain: BFO_0000004
range: BFO_0000031
property chain axiom: concretizes
property chain axiom: has characteristic
IAO_0000112: Molecules of DNA are carriers of genetic information.
IAO_0000112: This copy of *War and Peace* is carrier of the novel written by Tolstoy.
IAO_0000112: This hard drive is carrier of these data items.
definition: *b* is carrier of *c* at time *t* if and only if *c* *g-depends on* *b* at *t*
IAO_0000119: [072-ISO]

organism
type: Class
subclass of: multicellular structure
disjoint with: organism subdivision
definition: An individual member of the species Drosophila melanogaster.
database_cross_reference: CARO:0000012
database_cross_reference: NCBITaxon:7227
database_cross_reference: UBERON:0000468
has OBO namespace: fly_anatomy.ontology
has related synonym: Drosophila
has related synonym: whole organism
id: FBbt:00000001
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: organism
annotated property: definition
annotated target: An individual member of the species Drosophila melanogaster.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

tagma
type: Class
subclass of: anterior-posterior subdivision of organism
subclass of: Restriction
  on property: part of
  some values from: organism
definition: One of the three main divisions of the whole organism formed from groups of segments.
database_cross_reference: UBERON:6000002
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000002
in subset: FB gloss
in subset: cur
in subset: larval OF

Axiom
annotated source: tagma
annotated property: definition
annotated target: One of the three main divisions of the whole organism formed from groups of segments.
database_cross_reference: FBC:GG

head
type: Class
subclass of: tagma
definition: Anterior part of the organism, including mouthparts, some sensory structures and the brain.
database_cross_reference: UBERON:6000004
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000004
in subset: cur
in subset: larval OF

Axiom
annotated source: head
annotated property: definition
annotated target: Anterior part of the organism, including mouthparts, some sensory structures and the brain.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

anatomical structure
type: Class
subclass of: material anatomical entity
definition: Material anatomical entity that has inherent 3D shape, whose parts are all connected and that is generated by coordinated expression of the organism's own genome.
database_cross_reference: CARO:0000003
database_cross_reference: UBERON:0000061
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007001
in subset: cur
in subset: larval OF

Axiom
annotated source: anatomical structure
annotated property: definition
annotated target: Material anatomical entity that has inherent 3D shape, whose parts are all connected and that is generated by coordinated expression of the organism's own genome.
database_cross_reference: https://orcid.org/0000-0001-9114-8737
database_cross_reference: https://orcid.org/0000-0002-7073-9172

organism subdivision
type: Class
subclass of: multicellular structure
definition: Anatomical structure that is a primary subdivision of whole organism. The mereological sum of these is the whole organism.
database_cross_reference: CARO:0000032
database_cross_reference: UBERON:0000475
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007009
in subset: cur
in subset: larval OF

Axiom
annotated source: organism subdivision
annotated property: definition
annotated target: Anatomical structure that is a primary subdivision of whole organism. The mereological sum of these is the whole organism.
database_cross_reference: https://orcid.org/0000-0001-9114-8737

material anatomical entity
type: Class
subclass of: anatomical entity
database_cross_reference: CARO:0000006
database_cross_reference: UBERON:0000465
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007016
in subset: cur
in subset: larval OF

anterior-posterior subdivision of organism
type: Class
subclass of: organism subdivision
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-06-30T04:15:23Z
database_cross_reference: UBERON:6057001
has OBO namespace: fly_anatomy.ontology
id: FBbt:00057001
in subset: larval OF

multicellular structure
type: Class
subclass of: anatomical structure
definition: Anatomical structure that has multiple cells as parts.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2010-11-02T02:25:04Z
database_cross_reference: UBERON:0010000
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100313

Axiom
annotated source: multicellular structure
annotated property: definition
annotated target: Anatomical structure that has multiple cells as parts.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

anatomical entity
type: Class
equivalent class: Class
  intersection of: CARO_0000000
  intersection of: Restriction
    on property: part of
    some values from: Drosophila melanogaster
subclass of: CARO_0000000
subclass of: Restriction
  on property: part of
  some values from: Drosophila melanogaster
definition: Anatomical entity which is part_of Drosophila melanogaster.
has alternative id: FBbt_root:00000000
database_cross_reference: UBERON:0001062
has OBO namespace: fly_anatomy.ontology
has related synonym: Drosophila
id: FBbt:10000000
in subset: EmbDevSlim
in subset: cur
in subset: larval OF

Axiom
annotated source: anatomical entity
annotated property: definition
annotated target: Anatomical entity which is part_of Drosophila melanogaster.
database_cross_reference: https://orcid.org/0000-0001-9114-8737

FlyBase CV
type: Class
definition: FlyBase miscellaneous controlled vocabulary term.
has OBO namespace: FlyBase miscellaneous CV
id: FBcv:0000000

descriptor
type: Class
subclass of: FlyBase CV
definition: Term that describes an allele, balancer, group or publication.
has OBO namespace: FlyBase miscellaneous CV
id: FBcv:0000013
in subset: do not annotate

Axiom
annotated source: descriptor
annotated property: definition
annotated target: Term that describes an allele, balancer, group or publication.
database_cross_reference: FBC:MMC

dataset descriptor
type: Class
subclass of: descriptor
definition: Term that describes a dataset.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: FlyBase miscellaneous CV
id: FBcv:0003021

Axiom
annotated source: dataset descriptor
annotated property: definition
annotated target: Term that describes a dataset.
database_cross_reference: FBC:GD

dataset entity type
type: Class
subclass of: dataset descriptor
definition: Term that specifies the dataset component type.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: dataset_entity_type
id: FBcv:0003022

Axiom
annotated source: dataset entity type
annotated property: definition
annotated target: Term that specifies the dataset component type.
database_cross_reference: FBC:GD

project
type: Class
subclass of: dataset entity type
definition: A set of biological data from a single study. Corresponds to the NCBI bioproject, GEO series or SRA study.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: dataset_entity_type
id: FBcv:0003023

Axiom
annotated source: project
annotated property: definition
annotated target: A set of biological data from a single study. Corresponds to the NCBI bioproject, GEO series or SRA study.
database_cross_reference: FBC:GD

biosample
type: Class
subclass of: dataset entity type
definition: Biological source material characterized by an experiment.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: dataset_entity_type
id: FBcv:0003024

Axiom
annotated source: biosample
annotated property: definition
annotated target: Biological source material characterized by an experiment.
database_cross_reference: FBC:GD

Drosophila life
type: Class
subclass of: BFO_0000003
definition: The life of an individual of the species Drosophila melanogaster, from fertilization to death.
has alternative id: FBdv_root:00000000
has exact synonym: Drosophila life cycle
has OBO namespace: FlyBase_development_CV
id: FBdv:00000000

Axiom
annotated source: Drosophila life
annotated property: definition
annotated target: The life of an individual of the species Drosophila melanogaster, from fertilization to death.
database_cross_reference: FBC:DOS

cleavage stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: fertilized egg stage
definition: A collective term for stages 1-4.
has OBO namespace: FlyBase_development_CV
id: FBdv:00000054
comment: Temporal ordering number - 25.

Axiom
annotated source: cleavage stage
annotated property: definition
annotated target: A collective term for stages 1-4.
database_cross_reference: FBC:DOS

late extended germ band stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 10
subclass of: Restriction
  on property: immediately preceded by
  some values from: early extended germ band stage
definition: A collective term for stages 11 and 12.
has OBO namespace: FlyBase_development_CV
id: FBdv:00004450
comment: Temporal ordering number - 300.

Axiom
annotated source: late extended germ band stage
annotated property: definition
annotated target: A collective term for stages 11 and 12.
database_cross_reference: FBC:DOS

oogenesis
type: Class
subclass of: developmental process
definition: The complete process of formation and maturation of an ovum or female gemate from a primordial female germ cell.
database_cross_reference: GO:0048477
has exact synonym: oogenesis stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00004886
comment: Temporal ordering number - 10000.

Axiom
annotated source: oogenesis
annotated property: definition
annotated target: The complete process of formation and maturation of an ovum or female gemate from a primordial female germ cell.
database_cross_reference: GO:0048477

developmental stage
type: Class
subclass of: BFO_0000003
definition: A temporal subdivision of a developmental process.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2009-10-01T05:56:56Z
has alternative id: FBdv:00007010
has OBO namespace: FlyBase_development_CV
id: FBdv:00005259

Axiom
annotated source: developmental stage
annotated property: definition
annotated target: A temporal subdivision of a developmental process.
database_cross_reference: FBC:DOS

oogenesis stage S1
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
definition: Earliest stage of ovarian cyst development - lasts while the 16 cell cyst is within the germarium (region 3).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005261
comment: Temporal ordering number - 10010.

Axiom
annotated source: oogenesis stage S1
annotated property: definition
annotated target: Earliest stage of ovarian cyst development - lasts while the 16 cell cyst is within the germarium (region 3).
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S2
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S1
definition: Oogenesis stage that begins when the cyst leaves the germarium (from this point the cyst is referred to as an egg chamber). During this stage, polyploidation of the nurse cells begins, they reach a ploidy of 8C, and follicle cells start to divide.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005262
comment: Temporal ordering number - 10020.

Axiom
annotated source: oogenesis stage S2
annotated property: definition
annotated target: Oogenesis stage that begins when the cyst leaves the germarium (from this point the cyst is referred to as an egg chamber). During this stage, polyploidation of the nurse cells begins, they reach a ploidy of 8C, and follicle cells start to divide.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S3
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S2
definition: Oogenesis stage that begins when the oocyte chromosomes condense into a karyosome attached to a distinctive spherical structure known as an endobody. The oocyte nucleolus disappears completely. During this stage, nurse cell ploidy reaches 16C.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005263
comment: Temporal ordering number - 10030.

Axiom
annotated source: oogenesis stage S3
annotated property: definition
annotated target: Oogenesis stage that begins when the oocyte chromosomes condense into a karyosome attached to a distinctive spherical structure known as an endobody. The oocyte nucleolus disappears completely. During this stage, nurse cell ploidy reaches 16C.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S4
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S3
definition: Oogenesis stage that begins when the nurse cells chromosomes become bulbous. Nurse cell chromosomes during this stage are polytene and reach a ploidy of 32C. The egg chamber is oval shaped.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005264
comment: Temporal ordering number - 10040.

Axiom
annotated source: oogenesis stage S4
annotated property: definition
annotated target: Oogenesis stage that begins when the nurse cells chromosomes become bulbous. Nurse cell chromosomes during this stage are polytene and reach a ploidy of 32C. The egg chamber is oval shaped.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S5
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S4
definition: Oogenesis stage that begins when nurse cell chromosomes are no longer bulbous - the association between homologs weakens so that these chromosomes no longer have a polytene structure. During this stage, posterior nurse cell nuclei have a higher ploidy (64C) than anterior ones.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005265
comment: Temporal ordering number - 10050.

Axiom
annotated source: oogenesis stage S5
annotated property: definition
annotated target: Oogenesis stage that begins when nurse cell chromosomes are no longer bulbous - the association between homologs weakens so that these chromosomes no longer have a polytene structure. During this stage, posterior nurse cell nuclei have a higher ploidy (64C) than anterior ones.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S6
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S5
definition: Oogenesis stage during which follicle cell division ceases.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005266
comment: Temporal ordering number - 10060.

Axiom
annotated source: oogenesis stage S6
annotated property: definition
annotated target: Oogenesis stage during which follicle cell division ceases.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S7
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S6
definition: Oogenesis stage during which polyploidation and enlargement of follicle cells begins. Nurse cell ploidy ranges from 256C (anterior) to 512C (posterior) and the egg chamber gains an elongated shape.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005267
comment: Temporal ordering number - 10070.

Axiom
annotated source: oogenesis stage S7
annotated property: definition
annotated target: Oogenesis stage during which polyploidation and enlargement of follicle cells begins. Nurse cell ploidy ranges from 256C (anterior) to 512C (posterior) and the egg chamber gains an elongated shape.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S8
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S7
definition: Oogenesis stage which begins when yolk first appears in the oocyte. Follicle cell migration over the oocyte begins during this stage (although mostly occurs during stage 9).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005268
comment: Temporal ordering number - 10080.

Axiom
annotated source: oogenesis stage S8
annotated property: definition
annotated target: Oogenesis stage which begins when yolk first appears in the oocyte. Follicle cell migration over the oocyte begins during this stage (although mostly occurs during stage 9).
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S9
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S8
definition: Oogenesis stage that begins when the border cells begin to migrate. During this stage: the oocyte is about 1/3 the length of the egg chamber with its nucleus located antero-dorsally; follicle cell migration results in an anterior to posterior gradient of follicle cell thickness with posterior cells being thicker (-> columnar) and posterior cells thinner ( -> squamous); border cell migration begins and ends; secretion of vitelline membrane begins.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005269
comment: Temporal ordering number - 10090.

Axiom
annotated source: oogenesis stage S9
annotated property: definition
annotated target: Oogenesis stage that begins when the border cells begin to migrate. During this stage: the oocyte is about 1/3 the length of the egg chamber with its nucleus located antero-dorsally; follicle cell migration results in an anterior to posterior gradient of follicle cell thickness with posterior cells being thicker (-> columnar) and posterior cells thinner ( -> squamous); border cell migration begins and ends; secretion of vitelline membrane begins.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S10
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S9
definition: Oogenesis stage that begins when all the oocyte associated follicular epithelium is columnar and all of the nurse cell associated follicular epithelium is completely squamous and ends with the beginning of nurse cell dumping.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005270
comment: Temporal ordering number - 10100.

Axiom
annotated source: oogenesis stage S10
annotated property: definition
annotated target: Oogenesis stage that begins when all the oocyte associated follicular epithelium is columnar and all of the nurse cell associated follicular epithelium is completely squamous and ends with the beginning of nurse cell dumping.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S10A
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S10
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S9
definition: Oogenesis stage which begins when all the oocyte associated follicular epithelium is columnar and all of the nurse cell associated follicular epithelium is completely squamous and ends when centripetal follicle migration begins. During this stage, the migrating border cells reach the oocyte. The oocyte is about 50% egg chamber length.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005271
comment: Temporal ordering number - 10110.

Axiom
annotated source: oogenesis stage S10A
annotated property: definition
annotated target: Oogenesis stage which begins when all the oocyte associated follicular epithelium is columnar and all of the nurse cell associated follicular epithelium is completely squamous and ends when centripetal follicle migration begins. During this stage, the migrating border cells reach the oocyte. The oocyte is about 50% egg chamber length.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074

oogenesis stage S10B
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S10
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S10A
definition: Oogenesis stage that begins when the centripetal follicle cells begin to migrate. As a result, the vitelline membrane extends into the opercular region. This stage ends when nurse cell dumping begins.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005272
comment: Temporal ordering number - 10120.

Axiom
annotated source: oogenesis stage S10B
annotated property: definition
annotated target: Oogenesis stage that begins when the centripetal follicle cells begin to migrate. As a result, the vitelline membrane extends into the opercular region. This stage ends when nurse cell dumping begins.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S11
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S10
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S10B
definition: Oogenesis stage that begins when nurse cell dumping begins and development of the wax layer begins. The dorsal appendages begin to form during this stage. This stage ends when dying nurse cells form an anterior cap to the oocyte.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005273
comment: Temporal ordering number - 10130.

Axiom
annotated source: oogenesis stage S11
annotated property: definition
annotated target: Oogenesis stage that begins when nurse cell dumping begins and development of the wax layer begins. The dorsal appendages begin to form during this stage. This stage ends when dying nurse cells form an anterior cap to the oocyte.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0043885
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S12
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S11
definition: Oogenesis stage that begins when dying nurse cells form an anterior cap to the oocyte. Shortly after this, nurse cell dumping and growth of the oocyte are complete. Elongation of the dorsal appendages and formation of the innermost chorionic layer and endochorion begins during this stage.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005274
comment: Temporal ordering number - 10160.

Axiom
annotated source: oogenesis stage S12
annotated property: definition
annotated target: Oogenesis stage that begins when dying nurse cells form an anterior cap to the oocyte. Shortly after this, nurse cell dumping and growth of the oocyte are complete. Elongation of the dorsal appendages and formation of the innermost chorionic layer and endochorion begins during this stage.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0043885
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S12A
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S12
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S11
definition: Innermost chorionic layer and endochorion begin to form in the anterior of the follicle.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005275
comment: Temporal ordering number - 10170.

Axiom
annotated source: oogenesis stage S12A
annotated property: definition
annotated target: Innermost chorionic layer and endochorion begin to form in the anterior of the follicle.
database_cross_reference: FlyBase:FBrf0043885

oogenesis stage S12B
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S12
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S12A
definition: Secretion of innermost chorionic layer and endochorion begins in the main follicle cells.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005276
comment: Temporal ordering number - 10180.

Axiom
annotated source: oogenesis stage S12B
annotated property: definition
annotated target: Secretion of innermost chorionic layer and endochorion begins in the main follicle cells.
database_cross_reference: FlyBase:FBrf0043885

oogenesis stage S12C
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S12
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S12B
definition: Formation of specialized endochorion structures in the anterior of the follicle: branches in the developing dorsal appendages; compact endochorion lacking the pillars seen in the rest of the follicle.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005277
comment: Temporal ordering number - 10190.

Axiom
annotated source: oogenesis stage S12C
annotated property: definition
annotated target: Formation of specialized endochorion structures in the anterior of the follicle: branches in the developing dorsal appendages; compact endochorion lacking the pillars seen in the rest of the follicle.
database_cross_reference: FlyBase:FBrf0021038

oogenesis stage S13
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S12
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S12C
definition: Oogenesis stage that begins when the micropyle begins to form. At the beginning of this stage, about 12-15 nurse cell nuclei remain at the anterior of the oocyte. By the end of this stage, none of these nuclei remain. Oocyte meiosis up to arrest at full metaphase I occurs during this stage.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005278
comment: Temporal ordering number - 10200.

Axiom
annotated source: oogenesis stage S13
annotated property: definition
annotated target: Oogenesis stage that begins when the micropyle begins to form. At the beginning of this stage, about 12-15 nurse cell nuclei remain at the anterior of the oocyte. By the end of this stage, none of these nuclei remain. Oocyte meiosis up to arrest at full metaphase I occurs during this stage.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0029744
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S13A
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S13
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S12C
definition: Oogenesis stage during which 12-15 nurse cell nuclei remain at the anterior of the oocyte. At this stage, the oocyte nucleus has reached its maximum volume and its chromosomes are compressed into a 5-7 micrometer karyosome.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005279
comment: Temporal ordering number - 10210. An alternative division of stage 13 into two sub-stages, A and B, has been defined on the basis of chorion development (see FBrf0043885). This ontology uses an alternative subdivision based on nurse cell nucleus number and oocyte meiosis, as the former at least, is easier to score than chorion ultrastructure.

Axiom
annotated source: oogenesis stage S13A
annotated property: definition
annotated target: Oogenesis stage during which 12-15 nurse cell nuclei remain at the anterior of the oocyte. At this stage, the oocyte nucleus has reached its maximum volume and its chromosomes are compressed into a 5-7 micrometer karyosome.
database_cross_reference: FlyBase:FBrf0029744

oogenesis stage S13B
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S13
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S13A
definition: Oogenesis stage during which 9-11 nurse cell nuclei remain at the anterior of the oocyte. During this stage, the nuclear membrane of the oocyte nucleus disappears, indicating the start of meiotic pro-metaphase.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005280
comment: Temporal ordering number - 10220. An alternative division of stage 13 into two sub-stages, A and B, has been defined on the basis of chorion development (see FBrf0043885). This ontology uses an alternative subdivision based on nurse cell nucleus number and oocyte meiosis, as the former at least, is easier to score than chorion ultrastructure.

Axiom
annotated source: oogenesis stage S13B
annotated property: definition
annotated target: Oogenesis stage during which 9-11 nurse cell nuclei remain at the anterior of the oocyte. During this stage, the nuclear membrane of the oocyte nucleus disappears, indicating the start of meiotic pro-metaphase.
database_cross_reference: FlyBase:FBrf0029744

oogenesis stage S13C
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S13
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S13B
definition: Oogenesis stage during which only 7-8 nurse cell nuclei remain at the anterior of the oocyte. At the beginning of this stage, oocyte chromosome bivalents separate from each other - indicating mid-prometaphase of oocyte meiosis.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005281
comment: Temporal ordering number - 10230.

Axiom
annotated source: oogenesis stage S13C
annotated property: definition
annotated target: Oogenesis stage during which only 7-8 nurse cell nuclei remain at the anterior of the oocyte. At the beginning of this stage, oocyte chromosome bivalents separate from each other - indicating mid-prometaphase of oocyte meiosis.
database_cross_reference: FlyBase:FBrf0029744

oogenesis stage S13D
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S13
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S13C
definition: Oogenesis stage during which only 5-6 nurse cell nuclei remain at the anterior of the oocyte. The oocyte nucleus is in late prometaphase:the bivalents arrange themselves in on the equatorial plane of the spindle; homologous centromeres are pulled towards the poles.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005282
comment: Temporal ordering number - 10240.

Axiom
annotated source: oogenesis stage S13D
annotated property: definition
annotated target: Oogenesis stage during which only 5-6 nurse cell nuclei remain at the anterior of the oocyte. The oocyte nucleus is in late prometaphase:the bivalents arrange themselves in on the equatorial plane of the spindle; homologous centromeres are pulled towards the poles.
database_cross_reference: FlyBase:FBrf0029744

oogenesis stage S14
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S13
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S13D
definition: The last stage of oogenesis. This stage begins when no nurse cell nuclei remain at the anterior of the egg (chamber). Exochorion formation and secretion occurs during this stage. The dorsal appendages complete their elongation and the follicle cells die.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005283
comment: Temporal ordering number - 10260.

Axiom
annotated source: oogenesis stage S14
annotated property: definition
annotated target: The last stage of oogenesis. This stage begins when no nurse cell nuclei remain at the anterior of the egg (chamber). Exochorion formation and secretion occurs during this stage. The dorsal appendages complete their elongation and the follicle cells die.
database_cross_reference: FlyBase:FBrf0043885

oogenesis stage S14A
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S14
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S13D
definition: Secretion and formation of the outer endochorionic network by throughout the follicle. Crystallization of the innermost chorionic layer of the main body follicle cells.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005284
comment: Temporal ordering number - 10270.

Axiom
annotated source: oogenesis stage S14A
annotated property: definition
annotated target: Secretion and formation of the outer endochorionic network by throughout the follicle. Crystallization of the innermost chorionic layer of the main body follicle cells.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0043885

oogenesis stage S14B
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S14
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S14A
definition: Secretion of the exochorion begins and ends.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005285
comment: Temporal ordering number - 10280.

Axiom
annotated source: oogenesis stage S14B
annotated property: definition
annotated target: Secretion of the exochorion begins and ends.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0043885

egg stage
type: Class
subclass of: developmental stage
definition: The stage of the Drosophila life-cycle from maturation of an egg to the end of fertilization. At the beginning of this stage, the nucleus is arrested in meiotic metaphase I. The completion of meiosis and the start of protein synthesis are triggered by ovulation. If the female has already mated, fertilization begins during meiosis.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005286
comment: Temporal ordering number - 10290.

Axiom
annotated source: egg stage
annotated property: definition
annotated target: The stage of the Drosophila life-cycle from maturation of an egg to the end of fertilization. At the beginning of this stage, the nucleus is arrested in meiotic metaphase I. The completion of meiosis and the start of protein synthesis are triggered by ovulation. If the female has already mated, fertilization begins during meiosis.
database_cross_reference: FlyBase:FBrf0064779

unfertilized egg stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: egg stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S14
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S14B
definition: Developmental stage that starts with ovulation, at the end of oogenesis, until the egg is fertilized by a sperm.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005287
comment: Temporal ordering number - 10300.

Axiom
annotated source: unfertilized egg stage
annotated property: definition
annotated target: Developmental stage that starts with ovulation, at the end of oogenesis, until the egg is fertilized by a sperm.
database_cross_reference: FlyBase:FBrf0158848

fertilized egg stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: egg stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: unfertilized egg stage
definition: Developmental stage that starts with sperm entry until the first mitotic division of the zygote.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005288
comment: Temporal ordering number - 10.

Axiom
annotated source: fertilized egg stage
annotated property: definition
annotated target: Developmental stage that starts with sperm entry until the first mitotic division of the zygote.
database_cross_reference: FlyBase:FBrf0229233

embryonic stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: unfertilized egg stage
subclass of: Restriction
  on property: immediately precedes
  some values from: larval stage
subclass of: Restriction
  on property: immediately precedes
  some values from: first instar larval stage
definition: The stage of the Drosophila life-cycle from fertilization to hatching.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005289
comment: Temporal ordering number - 20.

Axiom
annotated source: embryonic stage
annotated property: definition
annotated target: The stage of the Drosophila life-cycle from fertilization to hatching.
database_cross_reference: FBC:DOS

pre-blastoderm stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: cleavage stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: fertilized egg stage
definition: Embryonic stage 1-3.
has exact synonym: pre-blastoderm
has OBO namespace: FlyBase_development_CV
id: FBdv:00005290
comment: Temporal ordering number - 30.

Axiom
annotated source: pre-blastoderm stage
annotated property: definition
annotated target: Embryonic stage 1-3.
database_cross_reference: FBC:DOS

embryonic stage 1
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pre-blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: fertilized egg stage
definition: The embryonic stage that lasts from the end of fertilization to the end of the second nuclear division. Duration at 25 degrees C: approximately 25 minutes (0-25 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005291
comment: Temporal ordering number - 40.

Axiom
annotated source: embryonic stage 1
annotated property: definition
annotated target: The embryonic stage that lasts from the end of fertilization to the end of the second nuclear division. Duration at 25 degrees C: approximately 25 minutes (0-25 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0064779
database_cross_reference: FlyBase:FBrf0089570

embryonic cycle 1
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 1
subclass of: Restriction
  on property: immediately preceded by
  some values from: fertilized egg stage
definition: The first mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005292
comment: Temporal ordering number - 50.

Axiom
annotated source: embryonic cycle 1
annotated property: definition
annotated target: The first mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic stage 2
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pre-blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 1
definition: Nuclear divisions 3-8. The egg cytoplasm contracts producing a clear separation from the vitelline membrane and empty spaces at the anterior and posterior. The cleavage nuclei migrate towards the periphery. Duration at 25 degrees C approximately 40 minutes (25-65 minutes AEL).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005293
comment: Temporal ordering number - 70.

Axiom
annotated source: embryonic stage 2
annotated property: definition
annotated target: Nuclear divisions 3-8. The egg cytoplasm contracts producing a clear separation from the vitelline membrane and empty spaces at the anterior and posterior. The cleavage nuclei migrate towards the periphery. Duration at 25 degrees C approximately 40 minutes (25-65 minutes AEL).
database_cross_reference: FlyBase:FBrf0089570

embryonic cycle 2
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 1
definition: The second mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005294
comment: Temporal ordering number - 60.

Axiom
annotated source: embryonic cycle 2
annotated property: definition
annotated target: The second mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic cycle 3
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 1
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 2
definition: The third mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005295
comment: Temporal ordering number - 80.

Axiom
annotated source: embryonic cycle 3
annotated property: definition
annotated target: The third mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic cycle 4
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 3
definition: The fourth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005296
comment: Temporal ordering number - 90.

Axiom
annotated source: embryonic cycle 4
annotated property: definition
annotated target: The fourth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic cycle 5
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 4
definition: The fifth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005297
comment: Temporal ordering number - 100.

Axiom
annotated source: embryonic cycle 5
annotated property: definition
annotated target: The fifth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic cycle 6
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 5
definition: The sixth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005298
comment: Temporal ordering number - 110.

Axiom
annotated source: embryonic cycle 6
annotated property: definition
annotated target: The sixth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic cycle 7
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 6
definition: The seventh mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005299
comment: Temporal ordering number - 120.

Axiom
annotated source: embryonic cycle 7
annotated property: definition
annotated target: The seventh mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic cycle 8
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 7
definition: The eighth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005300
comment: Temporal ordering number - 130.

Axiom
annotated source: embryonic cycle 8
annotated property: definition
annotated target: The eighth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic stage 3
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pre-blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 8
definition: Nuclear division 9. The cleavage nuclei complete their migration to the periphery. Polar buds form at the posterior pole and divide once. Duration at 25 degrees C: approximately 15 minutes (65-80 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005301
comment: Temporal ordering number - 140.

Axiom
annotated source: embryonic stage 3
annotated property: definition
annotated target: Nuclear division 9. The cleavage nuclei complete their migration to the periphery. Polar buds form at the posterior pole and divide once. Duration at 25 degrees C: approximately 15 minutes (65-80 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic cycle 9
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 3
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 8
definition: The ninth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005302
comment: Temporal ordering number - 150.

Axiom
annotated source: embryonic cycle 9
annotated property: definition
annotated target: The ninth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

blastoderm stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pre-blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 3
definition: Embryonic stages 4 and 5.
has exact synonym: blastoderm
has OBO namespace: FlyBase_development_CV
id: FBdv:00005304
comment: Temporal ordering number - 160.

Axiom
annotated source: blastoderm stage
annotated property: definition
annotated target: Embryonic stages 4 and 5.
database_cross_reference: FBC:DOS

embryonic stage 4
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pre-blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 3
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 9
definition: Nuclear division 10-13. Polar buds divide twice and become tightly grouped at the posterior pole by the end of this stage. Nuclei visible at the rim of the embryo. Stage 4 ends with the beginning of cellularization. Duration at 25 degrees C: approximately 50 minutes (80-130 minutes after egg laying).
has exact synonym: syncytial blastoderm
has exact synonym: syncytial blastoderm stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005306
comment: Temporal ordering number - 170.

Axiom
annotated source: embryonic stage 4
annotated property: definition
annotated target: Nuclear division 10-13. Polar buds divide twice and become tightly grouped at the posterior pole by the end of this stage. Nuclei visible at the rim of the embryo. Stage 4 ends with the beginning of cellularization. Duration at 25 degrees C: approximately 50 minutes (80-130 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 5
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: cleavage stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 4
definition: Cellularization. Stage 5 begins when cellularization starts. Near the end of this stage the pole cells begin to migrate dorsally and ventral midline cells acquire an irregular, wavy appearance. Stage 5 ends when ventral furrow formation becomes apparent. Duration at 25 degrees: approximately 40 minutes (130-170 minutes after egg laying).
has exact synonym: cellular blastoderm
has exact synonym: cellular blastoderm stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005311
comment: Temporal ordering number - 210.

Axiom
annotated source: embryonic stage 5
annotated property: definition
annotated target: Cellularization. Stage 5 begins when cellularization starts. Near the end of this stage the pole cells begin to migrate dorsally and ventral midline cells acquire an irregular, wavy appearance. Stage 5 ends when ventral furrow formation becomes apparent. Duration at 25 degrees: approximately 40 minutes (130-170 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

gastrula stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 5
definition: Stages during which gastrulation occurs. 6-8.
has exact synonym: gastrula
has OBO namespace: FlyBase_development_CV
id: FBdv:00005317
comment: Temporal ordering number - 220.

Axiom
annotated source: gastrula stage
annotated property: definition
annotated target: Stages during which gastrulation occurs. 6-8.
database_cross_reference: FBC:DOS

embryonic stage 6
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: gastrula stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 5
definition: Stage 6 begins when the ventral furrow becomes apparent, an event which is followed rapidly by the formation of the cephalic furrow. Stage 6 ends when the pole cells have adopted a dorsal (horizontal) position at the posterior. Duration at 25 degrees C: approximately 10 minutes (170-180 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005318
comment: Temporal ordering number - 230.

Axiom
annotated source: embryonic stage 6
annotated property: definition
annotated target: Stage 6 begins when the ventral furrow becomes apparent, an event which is followed rapidly by the formation of the cephalic furrow. Stage 6 ends when the pole cells have adopted a dorsal (horizontal) position at the posterior. Duration at 25 degrees C: approximately 10 minutes (170-180 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 7
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: gastrula stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 6
definition: Stage 7 begins when the pole cells have adopted a dorsal (horizontal) position at the posterior. Invagination of the anterior and posterior midgut and hindgut follows. The 'discoid plate' that carries the pole cells forms a pocket. Transverse furrows (dorsal folds) form on the dorsal surface. This stage ends when the anterior wall of the amnioproctodeal invagination starts moving anteriorly and the pole cells are no longer visible externally. Duration at 25 degrees C: approximately 10 minutes (180-190 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005319
comment: Temporal ordering number - 240.

Axiom
annotated source: embryonic stage 7
annotated property: definition
annotated target: Stage 7 begins when the pole cells have adopted a dorsal (horizontal) position at the posterior. Invagination of the anterior and posterior midgut and hindgut follows. The 'discoid plate' that carries the pole cells forms a pocket. Transverse furrows (dorsal folds) form on the dorsal surface. This stage ends when the anterior wall of the amnioproctodeal invagination starts moving anteriorly and the pole cells are no longer visible externally. Duration at 25 degrees C: approximately 10 minutes (180-190 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

extended germ band stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: gastrula stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 8
definition: Stages during which the germ band is extended - 9-12.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005321
comment: Temporal ordering number - 260.

Axiom
annotated source: extended germ band stage
annotated property: definition
annotated target: Stages during which the germ band is extended - 9-12.
database_cross_reference: FBC:DOS

embryonic stage 8
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: gastrula stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 7
definition: Stage 8 starts with the rapid phase of germ band extension and ends with the beginning of mesodermal segmentation. By the end of this stage germ band extension has progressed to the point where the proctodeal opening is at about 60% egg length and the dorsal folds (transverse furrows) are no longer visible. Duration at 25 degrees C: approximately 30 minutes (190-220 minutes after egg laying).
has exact synonym: rapidly extending germ band stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005322
comment: Temporal ordering number - 250.

Axiom
annotated source: embryonic stage 8
annotated property: definition
annotated target: Stage 8 starts with the rapid phase of germ band extension and ends with the beginning of mesodermal segmentation. By the end of this stage germ band extension has progressed to the point where the proctodeal opening is at about 60% egg length and the dorsal folds (transverse furrows) are no longer visible. Duration at 25 degrees C: approximately 30 minutes (190-220 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 9
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: early extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: gastrula stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 8
definition: Stage 9 begins when mesodermal segmentation becomes (transiently) visible, and ends with the appearance of the stomodeal invagination slightly ventral to the anterior pole. Duration at 25 degrees C: approximately 40 minutes (220-260 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005323
comment: Temporal ordering number - 280.

Axiom
annotated source: embryonic stage 9
annotated property: definition
annotated target: Stage 9 begins when mesodermal segmentation becomes (transiently) visible, and ends with the appearance of the stomodeal invagination slightly ventral to the anterior pole. Duration at 25 degrees C: approximately 40 minutes (220-260 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 10
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: early extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 9
definition: Stage 10 begins with the appearance of the stomodeal invagination, slightly ventral to the anterior pole. Periodic furrows appear in the embryonic epidermis around the middle of the stage. The germ band continues to extend, reaching its maximum extent of 75% egg length towards the end of the stage. The end of the stage is marked by the beginning of invagination of the tracheal placodes. Duration at 25 degrees : approximately 60 minutes (260-320 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005324
comment: Temporal ordering number - 290.

Axiom
annotated source: embryonic stage 10
annotated property: definition
annotated target: Stage 10 begins with the appearance of the stomodeal invagination, slightly ventral to the anterior pole. Periodic furrows appear in the embryonic epidermis around the middle of the stage. The germ band continues to extend, reaching its maximum extent of 75% egg length towards the end of the stage. The end of the stage is marked by the beginning of invagination of the tracheal placodes. Duration at 25 degrees : approximately 60 minutes (260-320 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 11
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: late extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 10
subclass of: Restriction
  on property: immediately preceded by
  some values from: early extended germ band stage
definition: Stage 11 begins with the invagination of the tracheal placodes. Para-segmental furrow form and segment boundary furrows become deep folds. Within the head, gnathal protuberances become apparent. The end of this stage is signaled by the appearance of a distinct cleft at the posterior pole of the embryo, which becomes detached from the vitelline membrane. This marks the beginning of germ-band retraction. Duration at 25 degrees C: approximately 120 minutes (320-440 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005325
comment: Temporal ordering number - 310.

Axiom
annotated source: embryonic stage 11
annotated property: definition
annotated target: Stage 11 begins with the invagination of the tracheal placodes. Para-segmental furrow form and segment boundary furrows become deep folds. Within the head, gnathal protuberances become apparent. The end of this stage is signaled by the appearance of a distinct cleft at the posterior pole of the embryo, which becomes detached from the vitelline membrane. This marks the beginning of germ-band retraction. Duration at 25 degrees C: approximately 120 minutes (320-440 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 12
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: late extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 11
definition: Germ band retraction. Stage 12 begins when germ-band retraction starts and ends when this process is complete so that the prospective anal plate occupies the posterior pole. During this stage the posterior and anterior midgut primordia meet and fuse and the tracheal pits fuse to form the tracheal tree. Duration at 25 degrees C: approximately 120 minutes (440-560 minutes after egg laying).
has exact synonym: retracting germ band stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005327
comment: Temporal ordering number - 320.

Axiom
annotated source: embryonic stage 12
annotated property: definition
annotated target: Germ band retraction. Stage 12 begins when germ-band retraction starts and ends when this process is complete so that the prospective anal plate occupies the posterior pole. During this stage the posterior and anterior midgut primordia meet and fuse and the tracheal pits fuse to form the tracheal tree. Duration at 25 degrees C: approximately 120 minutes (440-560 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 13
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: dorsal closure stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: late extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 12
definition: Stage 13 begins at the completion of germ-band retraction, when the prospective anal plate occupy the posterior pole. The dorsal ridge becomes apparent externally; the clypeolabrum retracts, leaving a triangular shaped gap at the anterior pole; the labium moves to the ventral midline. This stage ends when head involution begins. Duration at 25 degrees C: Approximately 60 minutes (560-620 minutes after egg laying).
has exact synonym: contracted germ band stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005328
comment: Temporal ordering number - 340.

Axiom
annotated source: embryonic stage 13
annotated property: definition
annotated target: Stage 13 begins at the completion of germ-band retraction, when the prospective anal plate occupy the posterior pole. The dorsal ridge becomes apparent externally; the clypeolabrum retracts, leaving a triangular shaped gap at the anterior pole; the labium moves to the ventral midline. This stage ends when head involution begins. Duration at 25 degrees C: Approximately 60 minutes (560-620 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 14
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: dorsal closure stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 13
definition: Stage 14 begins with the initiation of head involution. Closure of the midgut around the yolk and dorsal closure continue. Dorsal closure is 80% complete by the end of this stage. This stage ends with the appearance of the second midgut constriction. Duration at 25 degrees C: approximately 60 minutes (620-680 minutes after egg laying).
has exact synonym: head involution stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005330
comment: Temporal ordering number - 350.

Axiom
annotated source: embryonic stage 14
annotated property: definition
annotated target: Stage 14 begins with the initiation of head involution. Closure of the midgut around the yolk and dorsal closure continue. Dorsal closure is 80% complete by the end of this stage. This stage ends with the appearance of the second midgut constriction. Duration at 25 degrees C: approximately 60 minutes (620-680 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

dorsal closure stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: late extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 12
definition: A collective term for stages 13-15.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005331
comment: Temporal ordering number - 330.

Axiom
annotated source: dorsal closure stage
annotated property: definition
annotated target: A collective term for stages 13-15.
database_cross_reference: FBC:DOS

embryonic stage 15
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: dorsal closure stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 14
definition: Stage 15 begins with the appearance of the second midgut constriction. During this stage the 1st and 3rd midgut constrictions form, dorsal closure is completed, and epidermal segmentation is accomplished. This stage ends when the intersegmental grooves can be distinguished at mid-dorsal level. Duration at 25 degrees C: approximately 100 minutes (680-780 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005332
comment: Temporal ordering number - 360.

Axiom
annotated source: embryonic stage 15
annotated property: definition
annotated target: Stage 15 begins with the appearance of the second midgut constriction. During this stage the 1st and 3rd midgut constrictions form, dorsal closure is completed, and epidermal segmentation is accomplished. This stage ends when the intersegmental grooves can be distinguished at mid-dorsal level. Duration at 25 degrees C: approximately 100 minutes (680-780 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

late embryonic stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: dorsal closure stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 15
definition: Embryonic stages 16-17.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005333
comment: Temporal ordering number - 370.

Axiom
annotated source: late embryonic stage
annotated property: definition
annotated target: Embryonic stages 16-17.
database_cross_reference: FBC:DOS

embryonic stage 16
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: late embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: dorsal closure stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 15
definition: Stage 16 begins when the intersegmental grooves can be distinguished at mid-dorsal level, and ends when the dorsal ridge (frontal sac) has overgrown the tip of the clypeolabrum, which is thereby enclosed in the atrium. During this stage the ventral cord retracts to about 60% egg length. Duration at 25 degrees C: approximately 180 minutes (780-960 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005334
comment: Temporal ordering number - 380.

Axiom
annotated source: embryonic stage 16
annotated property: definition
annotated target: Stage 16 begins when the intersegmental grooves can be distinguished at mid-dorsal level, and ends when the dorsal ridge (frontal sac) has overgrown the tip of the clypeolabrum, which is thereby enclosed in the atrium. During this stage the ventral cord retracts to about 60% egg length. Duration at 25 degrees C: approximately 180 minutes (780-960 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 17
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: late embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 16
definition: Stage 17 begins when the dorsal ridge (frontal sac) has overgrown the tip of the clypeolabrum, which is thereby enclosed in the atrium. It lasts until hatching of the embryo (approximately 24 hours after egg laying), during which time much terminal differentiation occurs, the tracheal tree fills with air, so becoming completely visible, and the ventral cord continues to retract. Duration at 25 degrees C: approximately 8 hours (16-24 hours after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005335
comment: Temporal ordering number - 390.

Axiom
annotated source: embryonic stage 17
annotated property: definition
annotated target: Stage 17 begins when the dorsal ridge (frontal sac) has overgrown the tip of the clypeolabrum, which is thereby enclosed in the atrium. It lasts until hatching of the embryo (approximately 24 hours after egg laying), during which time much terminal differentiation occurs, the tracheal tree fills with air, so becoming completely visible, and the ventral cord continues to retract. Duration at 25 degrees C: approximately 8 hours (16-24 hours after egg laying).
database_cross_reference: FlyBase:FBrf0089570

larval stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 17
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 17(iv)
subclass of: Restriction
  on property: immediately precedes
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately precedes
  some values from: P-stage
definition: The stage of the Drosophila life-cycle from hatching to the beginning of puparium formation.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005336
comment: Temporal ordering number - 400.

Axiom
annotated source: larval stage
annotated property: definition
annotated target: The stage of the Drosophila life-cycle from hatching to the beginning of puparium formation.
database_cross_reference: FBC:DOS

first instar larval stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: substage of
  some values from: larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: late embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 17
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 17(iv)
subclass of: Restriction
  on property: immediately precedes
  some values from: second instar larval stage
definition: The first larval instar begins at hatching and ends at the first larval molt. Anterior spiracles are not yet present; posterior spiracles have two openings each. Salivary glands are very small and all cells are uniform in size. Mouth hooks typically have one tooth. Duration at 25 degrees C: approximately 25 hours (24-49 hours after egg laying; 0-25 hours after hatching).
database_cross_reference: UBERON:8000000
has exact synonym: L1
has exact synonym: first instar larva
has OBO namespace: FlyBase_development_CV
id: FBdv:00005337
comment: Temporal ordering number - 410.

Axiom
annotated source: first instar larval stage
annotated property: definition
annotated target: The first larval instar begins at hatching and ends at the first larval molt. Anterior spiracles are not yet present; posterior spiracles have two openings each. Salivary glands are very small and all cells are uniform in size. Mouth hooks typically have one tooth. Duration at 25 degrees C: approximately 25 hours (24-49 hours after egg laying; 0-25 hours after hatching).
database_cross_reference: FlyBase:FBrf0007733

second instar larval stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: substage of
  some values from: larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: first instar larval stage
subclass of: Restriction
  on property: immediately precedes
  some values from: third instar larval stage
definition: The second larval instar begins at the first larval molt and ends at the second larval molt. Larvae are actively feeding and crawling in the food. Distinct anterior spiracles are present as enlargements at the end of the tracheal trunk, but not open to the outside; posterior spiracles have three openings each, and four groups of small unbranched hairs. The salivary glands extend to the first abdominal segment, and have cells that are uniform in size. Mouth hooks typically have two or three teeth. Duration at 25 degrees C: approximately 23 hours (49-72 hours after egg laying; 25-48 hours after hatching).
database_cross_reference: UBERON:8000001
has exact synonym: L2
has exact synonym: second instar larva
has OBO namespace: FlyBase_development_CV
id: FBdv:00005338
comment: Temporal ordering number - 420.

Axiom
annotated source: second instar larval stage
annotated property: definition
annotated target: The second larval instar begins at the first larval molt and ends at the second larval molt. Larvae are actively feeding and crawling in the food. Distinct anterior spiracles are present as enlargements at the end of the tracheal trunk, but not open to the outside; posterior spiracles have three openings each, and four groups of small unbranched hairs. The salivary glands extend to the first abdominal segment, and have cells that are uniform in size. Mouth hooks typically have two or three teeth. Duration at 25 degrees C: approximately 23 hours (49-72 hours after egg laying; 25-48 hours after hatching).
database_cross_reference: FlyBase:FBrf0007733

third instar larval stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: substage of
  some values from: larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: second instar larval stage
subclass of: Restriction
  on property: immediately precedes
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately precedes
  some values from: P-stage
definition: The third larval instar begins at the second larval molt and ends at puparium formation. Anterior spiracles are open to the outside; posterior spiracles have three openings each, and four groups of large branched hairs. The salivary glands extend to the second abdominal segment, with cells larger in the posterior than in the anterior of the gland. Mouth hooks typically have 9-12 teeth. About 24 hours before pupariation (at 25 degree C), larvae stop feeding and climb away from their food. Duration at 25 degrees C: approximately 48 hours (72-120 hours after egg laying; 48-96 hours after hatching).
database_cross_reference: UBERON:8000002
has exact synonym: L3
has OBO namespace: FlyBase_development_CV
has related synonym: third instar larva
id: FBdv:00005339
comment: Temporal ordering number - 430.

Axiom
annotated source: third instar larval stage
annotated property: definition
annotated target: The third larval instar begins at the second larval molt and ends at puparium formation. Anterior spiracles are open to the outside; posterior spiracles have three openings each, and four groups of large branched hairs. The salivary glands extend to the second abdominal segment, with cells larger in the posterior than in the anterior of the gland. Mouth hooks typically have 9-12 teeth. About 24 hours before pupariation (at 25 degree C), larvae stop feeding and climb away from their food. Duration at 25 degrees C: approximately 48 hours (72-120 hours after egg laying; 48-96 hours after hatching).
database_cross_reference: FlyBase:FBrf0007733

early third instar larval stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: second instar larval stage
definition: Third instar larva prior to the wandering stage (approximately the first 24 hours of the third instar larval stage under standard conditions at 25'C.).
contributor: http://orcid.org/0000-0002-7073-9172
date: 2008-11-13T11:51:56Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00005340
comment: Temporal ordering number - 440.

Axiom
annotated source: early third instar larval stage
annotated property: definition
annotated target: Third instar larva prior to the wandering stage (approximately the first 24 hours of the third instar larval stage under standard conditions at 25'C.).
database_cross_reference: FlyBase:FBrf0049147

wandering third instar larval stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: late third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: early third instar larval stage
definition: Stage of the third larval instar during which the larva wanders out of the food and climbs. Under optimum conditions at 25'C, this occurs approximately 24 hours after the start of the third instar larval stage.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2008-11-13T11:55:46Z
has broad synonym: late third instar
has broad synonym: post-feeding larva
has OBO namespace: FlyBase_development_CV
id: FBdv:00005341
comment: Temporal ordering number - 460.

Axiom
annotated source: wandering third instar larval stage
annotated property: definition
annotated target: Stage of the third larval instar during which the larva wanders out of the food and climbs. Under optimum conditions at 25'C, this occurs approximately 24 hours after the start of the third instar larval stage.
database_cross_reference: FlyBase:FBrf0049147

prepupal stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: substage of
  some values from: P-stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar larval stage L2
subclass of: Restriction
  on property: immediately preceded by
  some values from: late third instar larval stage
subclass of: Restriction
  on property: immediately precedes
  some values from: pupal stage
definition: The prepupal stage begins at puparium formation and ends when larval/pupal apolysis is complete, as indicated by the completion of imaginal head sac eversion and the expulsion of the oral armature of the larva. Duration at 25 degrees C: approximately 12 hours. (120-132.2 hours after egg laying; 0-12.2 hours after puparium formation).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005342
comment: Temporal ordering number - 500.

Axiom
annotated source: prepupal stage
annotated property: definition
annotated target: The prepupal stage begins at puparium formation and ends when larval/pupal apolysis is complete, as indicated by the completion of imaginal head sac eversion and the expulsion of the oral armature of the larva. Duration at 25 degrees C: approximately 12 hours. (120-132.2 hours after egg laying; 0-12.2 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

prepupal stage P1
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar larval stage L2
subclass of: Restriction
  on property: immediately preceded by
  some values from: late third instar larval stage
definition: Extends from puparium formation through tanning of the pupal cuticle. Posterior spiracles and ridge between anterior spiracles tan orange. Wriggling stops completely. Puparium becomes brown to the unaided eye. Duration at 25 degrees C: approximately 20 minutes. (120-120.3 hours after egg laying; 0-0.3 hours after puparium formation).
has exact synonym: pupal stage P1
has exact synonym: puparium formation
has exact synonym: white puparium stage
has narrow synonym: pupal stage P0
has narrow synonym: white prepupa
has OBO namespace: FlyBase_development_CV
id: FBdv:00005343
comment: Temporal ordering number - 510.

Axiom
annotated source: prepupal stage P1
annotated property: definition
annotated target: Extends from puparium formation through tanning of the pupal cuticle. Posterior spiracles and ridge between anterior spiracles tan orange. Wriggling stops completely. Puparium becomes brown to the unaided eye. Duration at 25 degrees C: approximately 20 minutes. (120-120.3 hours after egg laying; 0-0.3 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: prepupal stage P1
annotated property: hasExactSynonym
annotated target: puparium formation
database_cross_reference: FlyBase:FBrf0036849

Axiom
annotated source: prepupal stage P1
annotated property: hasExactSynonym
annotated target: white puparium stage
database_cross_reference: FlyBase:FBrf0036849

Axiom
annotated source: prepupal stage P1
annotated property: hasNarrowSynonym
annotated target: pupal stage P0
database_cross_reference: FlyBase:FBrf0036849

Axiom
annotated source: prepupal stage P1
annotated property: hasNarrowSynonym
annotated target: white prepupa
database_cross_reference: FlyBase:FBrf0036849

prepupal stage P2
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P1
definition: Male gonads become less distinct. Oral armature stops moving permanently. Dorsal medial abdominal contractions stop. Gas bubble becomes visible within abdomen. Duration at 25 degrees C: approximately 100 minutes. (120.3-122 hours after egg laying; 0.3-2 hours after puparium formation).
has exact synonym: brown puparium stage
has exact synonym: pupal stage P2
has OBO namespace: FlyBase_development_CV
id: FBdv:00005344
comment: Temporal ordering number - 520.

Axiom
annotated source: prepupal stage P2
annotated property: definition
annotated target: Male gonads become less distinct. Oral armature stops moving permanently. Dorsal medial abdominal contractions stop. Gas bubble becomes visible within abdomen. Duration at 25 degrees C: approximately 100 minutes. (120.3-122 hours after egg laying; 0.3-2 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: prepupal stage P2
annotated property: hasExactSynonym
annotated target: brown puparium stage
database_cross_reference: FlyBase:FBrf0036849

prepupal stage P3
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P2
definition: Ridge of the operculum becomes distinct. Puparium begins to separate from underlying epidermis. Becomes positively buoyant. Duration at 25 degrees C: approximately 4 hours, 45 minutes. (122-126.75 hours after egg laying; 2-6.75 hours after puparium formation).
has exact synonym: bubble prepupa stage
has exact synonym: pupal stage P3
has OBO namespace: FlyBase_development_CV
id: FBdv:00005345
comment: Temporal ordering number - 530.

Axiom
annotated source: prepupal stage P3
annotated property: definition
annotated target: Ridge of the operculum becomes distinct. Puparium begins to separate from underlying epidermis. Becomes positively buoyant. Duration at 25 degrees C: approximately 4 hours, 45 minutes. (122-126.75 hours after egg laying; 2-6.75 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: prepupal stage P3
annotated property: hasExactSynonym
annotated target: bubble prepupa stage
database_cross_reference: FlyBase:FBrf0036849

prepupal stage P4
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P3
definition: Prepupal stage P4 begins as the lateral trunk trachea become obscured and ends when the imaginal head sac is everted and the oral armature of the larva is expelled. Duration at 25 degrees C: approximately 5 hours, 30 minutes. (126.75-132.2 hours after egg laying; 6.75-12.2 hours after puparium formation).
has exact synonym: cryptocephalic pupa
has exact synonym: pupal stage P4
has OBO namespace: FlyBase_development_CV
id: FBdv:00005346
comment: Temporal ordering number - 540.

Axiom
annotated source: prepupal stage P4
annotated property: definition
annotated target: Prepupal stage P4 begins as the lateral trunk trachea become obscured and ends when the imaginal head sac is everted and the oral armature of the larva is expelled. Duration at 25 degrees C: approximately 5 hours, 30 minutes. (126.75-132.2 hours after egg laying; 6.75-12.2 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: prepupal stage P4
annotated property: hasExactSynonym
annotated target: cryptocephalic pupa
database_cross_reference: FlyBase:FBrf0036849

prepupal stage P4(i)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: prepupal stage P4
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P3
definition: Lateral trunk tracheae become obscured. Dorsal medial abdominal contractions occur. Everted leg and wing discs become visible. Bubble appears in posterior of puparium, displacing the pupa anteriorly; abdominal bubble disappears. Duration at 25 degrees C: approximately 5 hours, 15 minutes. (126.75-132 hours after egg laying; 6.75-12 hours after puparium formation).
has exact synonym: buoyant stage
has exact synonym: pupal stage P4(i)
has OBO namespace: FlyBase_development_CV
id: FBdv:00005347
comment: Temporal ordering number - 550.

Axiom
annotated source: prepupal stage P4(i)
annotated property: definition
annotated target: Lateral trunk tracheae become obscured. Dorsal medial abdominal contractions occur. Everted leg and wing discs become visible. Bubble appears in posterior of puparium, displacing the pupa anteriorly; abdominal bubble disappears. Duration at 25 degrees C: approximately 5 hours, 15 minutes. (126.75-132 hours after egg laying; 6.75-12 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: prepupal stage P4(i)
annotated property: hasExactSynonym
annotated target: buoyant stage
database_cross_reference: FlyBase:FBrf0036849

prepupal stage P4(ii)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: prepupal stage P4
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P4(i)
definition: Bubble is displaced to anterior end of the puparium, and pupa withdraws to the posterior end. Imaginal head sac is everted and the oral armature of the larva is expelled. Duration at 25 degrees C: approximately 12 minutes. (132-132.2 hours after egg laying; 12-12.2 hours after puparium formation).
has exact synonym: moving bubble stage
has exact synonym: pupal stage P4(ii)
has OBO namespace: FlyBase_development_CV
id: FBdv:00005348
comment: Temporal ordering number - 560.

Axiom
annotated source: prepupal stage P4(ii)
annotated property: definition
annotated target: Bubble is displaced to anterior end of the puparium, and pupa withdraws to the posterior end. Imaginal head sac is everted and the oral armature of the larva is expelled. Duration at 25 degrees C: approximately 12 minutes. (132-132.2 hours after egg laying; 12-12.2 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: prepupal stage P4(ii)
annotated property: hasExactSynonym
annotated target: moving bubble stage
database_cross_reference: FlyBase:FBrf0036849

pupal stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: substage of
  some values from: P-stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately precedes
  some values from: pharate adult stage
definition: The pupal stage starts once larval/pupal apolysis is complete as indicated by the expulsion of the larval armature. Early in this stage, the legs and wings reach full extension along the abdomen. The stage ends when the pupal cuticle separates from the underlying epidermis (pupal/adult apolysis), and the eye cup becomes yellow at its periphery. Duration at 25 degrees C: approximately 32 hours. (132.2-164.3 hours after egg laying; 12.2-44.3 hours after puparium formation).
has exact synonym: phanerocephalic pupa
has OBO namespace: FlyBase_development_CV
id: FBdv:00005349
comment: Temporal ordering number - 570. DISAMBIGUATION: In Drosophila lab vernacular, the term 'pupal stage' is often used to refer to the entire period from formation of the puparium to eclosion. However, this does not correspond to the standard usage of 'pupal stage' for Cyclorrhaphous flies (for discussion see: FBrf0087128). Briefly: formation of the puparium (hardening of the larval cuticle) marks the beginning of the pre-pupal stage. The pupal stage begins following pupal/larval apolysis - detachment of the larval epidermis from the puparium. In Drosophila, the outward sign of the completion of apolysis is the eversion of the head and expulsion of the larval mouthparts (FBrf0036849). We use P-stage to refer to the stage from pupariation to eclosion, and restrict pupal stage to its standard usage.

Axiom
annotated source: pupal stage
annotated property: definition
annotated target: The pupal stage starts once larval/pupal apolysis is complete as indicated by the expulsion of the larval armature. Early in this stage, the legs and wings reach full extension along the abdomen. The stage ends when the pupal cuticle separates from the underlying epidermis (pupal/adult apolysis), and the eye cup becomes yellow at its periphery. Duration at 25 degrees C: approximately 32 hours. (132.2-164.3 hours after egg laying; 12.2-44.3 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pupal stage
annotated property: hasExactSynonym
annotated target: phanerocephalic pupa
database_cross_reference: FlyBase:FBrf0036849

pupal stage P5
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P4
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P4(ii)
definition: Pupal stage P5 starts when the legs and wings reach full extension along the abdomen and ends as the Malpighian tubules become prominent and green. Duration at 25 degrees C: approximately 6 hours, 30 minutes. (132.2-138.7 hours after egg laying; 12.2-18.7 hours after puparium formation).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005350
comment: Temporal ordering number - 580.

Axiom
annotated source: pupal stage P5
annotated property: definition
annotated target: Pupal stage P5 starts when the legs and wings reach full extension along the abdomen and ends as the Malpighian tubules become prominent and green. Duration at 25 degrees C: approximately 6 hours, 30 minutes. (132.2-138.7 hours after egg laying; 12.2-18.7 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

pupal stage P5(i)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pupal stage P5
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P4
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P4(ii)
definition: Legs and wings reach full extension along abdomen. Enlarged initial segments of anterior pair Malpighian tubules move from thorax into abdomen. Translucent patch that lacks adhering fat body cells becomes discernible in the middle of the eye region. Pair of white Malpighian tubules becomes visible dorsally in the abdomen. Duration at 25 degrees C: approximately 66 minutes. (132.2-133.3 hours after egg laying; 12.2-13.3 hours after puparium formation).
has exact synonym: Malpighian tubules migrating
has OBO namespace: FlyBase_development_CV
id: FBdv:00005351
comment: Temporal ordering number - 590.

Axiom
annotated source: pupal stage P5(i)
annotated property: definition
annotated target: Legs and wings reach full extension along abdomen. Enlarged initial segments of anterior pair Malpighian tubules move from thorax into abdomen. Translucent patch that lacks adhering fat body cells becomes discernible in the middle of the eye region. Pair of white Malpighian tubules becomes visible dorsally in the abdomen. Duration at 25 degrees C: approximately 66 minutes. (132.2-133.3 hours after egg laying; 12.2-13.3 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pupal stage P5(i)
annotated property: hasExactSynonym
annotated target: Malpighian tubules migrating
database_cross_reference: FlyBase:FBrf0036849

pupal stage P5(ii)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pupal stage P5
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage P5(i)
definition: Malpighian tubules become prominent and green. Duration at 25 degrees C: approximately 5 hours, 25 minutes. (133.3-138.7 hours after egg laying; 13.3-18.7 hours after puparium formation).
has exact synonym: white Malpighian tubules stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005352
comment: Temporal ordering number - 600.

Axiom
annotated source: pupal stage P5(ii)
annotated property: definition
annotated target: Malpighian tubules become prominent and green. Duration at 25 degrees C: approximately 5 hours, 25 minutes. (133.3-138.7 hours after egg laying; 13.3-18.7 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pupal stage P5(ii)
annotated property: hasExactSynonym
annotated target: white Malpighian tubules stage
database_cross_reference: FlyBase:FBrf0036849

pupal stage P6
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage P5
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage P5(ii)
definition: Dark green 'yellow body' appears between the anterior ends of the two Malpighian tubule segments, mid-dorsally at the anterior of the abdomen. Duration at 25 degrees C: approximately 13 hours, 45 minutes. (138.7-152.4 hours after egg laying; 18.7-32.4 hours after puparium formation).
has exact synonym: green Malpighian tubules stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005353
comment: Temporal ordering number - 610.

Axiom
annotated source: pupal stage P6
annotated property: definition
annotated target: Dark green 'yellow body' appears between the anterior ends of the two Malpighian tubule segments, mid-dorsally at the anterior of the abdomen. Duration at 25 degrees C: approximately 13 hours, 45 minutes. (138.7-152.4 hours after egg laying; 18.7-32.4 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pupal stage P6
annotated property: hasExactSynonym
annotated target: green Malpighian tubules stage
database_cross_reference: FlyBase:FBrf0036849

pupal stage P7
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage P6
definition: The 'yellow body' moves back between the Malpighian tubules. The transparent pupal cuticle separates from the underlying epidermis. Eye cup becomes yellow at its perimeter. Duration at 25 degrees C: approximately 12 hours. (152.4-164.3 hours after egg laying; 32.4-44.3 hours after puparium formation).
has exact synonym: yellow body stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005354
comment: Temporal ordering number - 620.

Axiom
annotated source: pupal stage P7
annotated property: definition
annotated target: The 'yellow body' moves back between the Malpighian tubules. The transparent pupal cuticle separates from the underlying epidermis. Eye cup becomes yellow at its perimeter. Duration at 25 degrees C: approximately 12 hours. (152.4-164.3 hours after egg laying; 32.4-44.3 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pupal stage P7
annotated property: hasExactSynonym
annotated target: yellow body stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P8
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage P7
definition: Pale yellow pigmentation spreads inwards across the eye. Eye color becomes bright yellow, then changes to amber. Duration at 25 degrees C: approximately 12 hours 20 minutes. (164.3-176.6 hours after egg laying; 44.3-56.6 hours after puparium formation).
has exact synonym: pupal stage P8
has exact synonym: yellow-eyed stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005355
comment: Temporal ordering number - 630.

Axiom
annotated source: pharate adult stage P8
annotated property: definition
annotated target: Pale yellow pigmentation spreads inwards across the eye. Eye color becomes bright yellow, then changes to amber. Duration at 25 degrees C: approximately 12 hours 20 minutes. (164.3-176.6 hours after egg laying; 44.3-56.6 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P8
annotated property: hasExactSynonym
annotated target: yellow-eyed stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P9
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P8
definition: Eye color darkens to deep amber, then becomes pale pink. Duration at 25 degrees C: approximately 18 hours. (176.6-194.5 hours after egg laying; 56.6-74.5 hours after puparium formation).
has exact synonym: amber-eyed stage
has exact synonym: pupal stage P9
has OBO namespace: FlyBase_development_CV
id: FBdv:00005356
comment: Temporal ordering number - 640.

Axiom
annotated source: pharate adult stage P9
annotated property: definition
annotated target: Eye color darkens to deep amber, then becomes pale pink. Duration at 25 degrees C: approximately 18 hours. (176.6-194.5 hours after egg laying; 56.6-74.5 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P9
annotated property: hasExactSynonym
annotated target: amber-eyed stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P10
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P9
definition: Eyes become bright red. Orbital and ocellar bristles and vibrissae darken. Duration at 25 degrees C: approximately 6 minutes. (194.5-194.6 hours after egg laying; 74.5-74.6 hours after puparium formation).
has exact synonym: pupal stage P10
has exact synonym: red-eye bald stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005357
comment: Temporal ordering number - 650.

Axiom
annotated source: pharate adult stage P10
annotated property: definition
annotated target: Eyes become bright red. Orbital and ocellar bristles and vibrissae darken. Duration at 25 degrees C: approximately 6 minutes. (194.5-194.6 hours after egg laying; 74.5-74.6 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P10
annotated property: hasExactSynonym
annotated target: red-eye bald stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P11
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P10
definition: Thoracic bristles become visible, and the tips of the wings turn grey. Duration at 25 degrees C: approximately 2 hours. (194.6-196.6 hours after egg laying; 74.6-76.6 hours after puparium formation).
has exact synonym: pupal stage P11
has OBO namespace: FlyBase_development_CV
id: FBdv:00005358
comment: Temporal ordering number - 660.

Axiom
annotated source: pharate adult stage P11
annotated property: definition
annotated target: Thoracic bristles become visible, and the tips of the wings turn grey. Duration at 25 degrees C: approximately 2 hours. (194.6-196.6 hours after egg laying; 74.6-76.6 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

pharate adult stage P11(i)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage P11
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P10
definition: Dorsal thoracic microchaetes and macrochaetes become visible. Duration at 25 degrees C: approximately 80 minutes (194.6-195.5 hours after egg laying; 74.6-75.9 hours after puparium formation).
has exact synonym: head bristles stage
has exact synonym: pupal stage P11(i)
has OBO namespace: FlyBase_development_CV
id: FBdv:00005359
comment: Temporal ordering number - 670.

Axiom
annotated source: pharate adult stage P11(i)
annotated property: definition
annotated target: Dorsal thoracic microchaetes and macrochaetes become visible. Duration at 25 degrees C: approximately 80 minutes (194.6-195.5 hours after egg laying; 74.6-75.9 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P11(i)
annotated property: hasExactSynonym
annotated target: head bristles stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P11(ii)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage P11
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P11(i)
definition: Tips of folded wings become grey. Duration at 25 degrees C: approximately 45 minutes (195.5-196.6 hours after egg laying; 75.9-76.6 hours after puparium formation).
has exact synonym: pupal stage P11(ii)
has exact synonym: thoracic bristles stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005360
comment: Temporal ordering number - 680.

Axiom
annotated source: pharate adult stage P11(ii)
annotated property: definition
annotated target: Tips of folded wings become grey. Duration at 25 degrees C: approximately 45 minutes (195.5-196.6 hours after egg laying; 75.9-76.6 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P11(ii)
annotated property: hasExactSynonym
annotated target: thoracic bristles stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P12
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P11
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P11(ii)
definition: Pharate adult stage P12 begins as the abdominal tergite bristles become visible, and ends as the wings darken to black. Duration at 25 degrees C: approximately 2 hours. (196.6-198.6 hours after egg laying; 76.6-78.6 hours after puparium formation).
has exact synonym: pupal stage P12
has OBO namespace: FlyBase_development_CV
id: FBdv:00005361
comment: Temporal ordering number - 690.

Axiom
annotated source: pharate adult stage P12
annotated property: definition
annotated target: Pharate adult stage P12 begins as the abdominal tergite bristles become visible, and ends as the wings darken to black. Duration at 25 degrees C: approximately 2 hours. (196.6-198.6 hours after egg laying; 76.6-78.6 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

pharate adult stage P12(i)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage P12
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P11
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P11(ii)
definition: Bristles of the abdominal tergites become visible, and the wings become grey. Duration at 25 degrees C: approximately 55 minutes. (196.6-197.5 hours after egg laying; 76.6-77.5 hours after puparium formation).
has exact synonym: pupal stage P12(i)
has exact synonym: wing tips grey stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005362
comment: Temporal ordering number - 700.

Axiom
annotated source: pharate adult stage P12(i)
annotated property: definition
annotated target: Bristles of the abdominal tergites become visible, and the wings become grey. Duration at 25 degrees C: approximately 55 minutes. (196.6-197.5 hours after egg laying; 76.6-77.5 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P12(i)
annotated property: hasExactSynonym
annotated target: wing tips grey stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P12(ii)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage P12
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P12(i)
definition: Sex combs darken in males. Wings darken to black. Duration at 25 degrees C: approximately 65 minutes. (197.5-198.6 hours after egg laying; 77.5-78.6 hours after puparium formation).
has exact synonym: pupal stage P12(ii)
has exact synonym: wings grey stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005363
comment: Temporal ordering number - 710.

Axiom
annotated source: pharate adult stage P12(ii)
annotated property: definition
annotated target: Sex combs darken in males. Wings darken to black. Duration at 25 degrees C: approximately 65 minutes. (197.5-198.6 hours after egg laying; 77.5-78.6 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P12(ii)
annotated property: hasExactSynonym
annotated target: wings grey stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P13
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P12
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P12(ii)
definition: Tarsal bristles darken and claws become black. Duration at 25 degrees C: approximately 3 hours, 20 minutes. (198.6-201.9 hours after egg laying; 78.6-81.9 hours after puparium formation).
has exact synonym: pupal stage P13
has exact synonym: wings black stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005364
comment: Temporal ordering number - 720.

Axiom
annotated source: pharate adult stage P13
annotated property: definition
annotated target: Tarsal bristles darken and claws become black. Duration at 25 degrees C: approximately 3 hours, 20 minutes. (198.6-201.9 hours after egg laying; 78.6-81.9 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P13
annotated property: hasExactSynonym
annotated target: wings black stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P14
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P13
definition: The meconium appears dorsally at the posterior tip of the abdomen. Duration at 25 degrees C: approximately 9 hours, 30 minutes (201.9-211.5 hours after egg laying; 81.9-91.5 hours after puparium formation).
has exact synonym: mature bristles stage
has exact synonym: pupal stage P14
has OBO namespace: FlyBase_development_CV
id: FBdv:00005365
comment: Temporal ordering number - 730.

Axiom
annotated source: pharate adult stage P14
annotated property: definition
annotated target: The meconium appears dorsally at the posterior tip of the abdomen. Duration at 25 degrees C: approximately 9 hours, 30 minutes (201.9-211.5 hours after egg laying; 81.9-91.5 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P14
annotated property: hasExactSynonym
annotated target: mature bristles stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P15
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P14
definition: Pharate adult stage P15 begins with the tanning of the tergites and ends with eclosion. Duration at 25 degrees C: approximately 8 hours, 30 minutes. (211.5-220 hours after egg laying; 91.5-100 hours after puparium formation).
has exact synonym: pupal stage P15
has OBO namespace: FlyBase_development_CV
id: FBdv:00005366
comment: Temporal ordering number - 740.

Axiom
annotated source: pharate adult stage P15
annotated property: definition
annotated target: Pharate adult stage P15 begins with the tanning of the tergites and ends with eclosion. Duration at 25 degrees C: approximately 8 hours, 30 minutes. (211.5-220 hours after egg laying; 91.5-100 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

pharate adult stage P15(i)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage P15
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P14
definition: Tanning of the tergites obscures the Malpighian tubules and the 'yellow body'. Legs begin to twitch; fly is able to walk if puparium is removed prematurely. Ptilinum expands by hydrostatic pressure, opening the operculum. Duration at 25 degrees C: approximately 8 hours, 6 minutes. (211.5-219.6 hours after egg laying; 91.5-99.6 hours after puparium formation).
has exact synonym: meconium stage
has exact synonym: pupal stage P15(i)
has OBO namespace: FlyBase_development_CV
id: FBdv:00005367
comment: Temporal ordering number - 750.

Axiom
annotated source: pharate adult stage P15(i)
annotated property: definition
annotated target: Tanning of the tergites obscures the Malpighian tubules and the 'yellow body'. Legs begin to twitch; fly is able to walk if puparium is removed prematurely. Ptilinum expands by hydrostatic pressure, opening the operculum. Duration at 25 degrees C: approximately 8 hours, 6 minutes. (211.5-219.6 hours after egg laying; 91.5-99.6 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P15(i)
annotated property: hasExactSynonym
annotated target: meconium stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P15(ii)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage P15
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P15(i)
definition: Stage which starts when the operculum opens and ends when eclosion is completed. Duration at 25 degrees C: approximately 24 minutes. (219.6-220 hours after egg laying; 99.6-100 hours after puparium formation).
has exact synonym: eclosion stage
has exact synonym: pupal stage P15(ii)
has OBO namespace: FlyBase_development_CV
id: FBdv:00005368
comment: Temporal ordering number - 760.

Axiom
annotated source: pharate adult stage P15(ii)
annotated property: definition
annotated target: Stage which starts when the operculum opens and ends when eclosion is completed. Duration at 25 degrees C: approximately 24 minutes. (219.6-220 hours after egg laying; 99.6-100 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P15(ii)
annotated property: hasExactSynonym
annotated target: eclosion stage
database_cross_reference: FlyBase:FBrf0036849

adult stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P15
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P15(ii)
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: P-stage
definition: The stage of the Drosophila life-cycle from eclosion to death.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005369
comment: Temporal ordering number - 770.

Axiom
annotated source: adult stage
annotated property: definition
annotated target: The stage of the Drosophila life-cycle from eclosion to death.
database_cross_reference: FBC:DOS

adult stage A1
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: immature adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P15(ii)
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: P-stage
subclass of: Restriction
  on property: immediately precedes
  some values from: adult stage A2
definition: Newly eclosed adult stage. Animal free of pupal case. Runs rapidly to find site for wing expansion. Wings are folded back and black against a very pale abdomen.
has alternative id: FBdv:00005373
has OBO namespace: FlyBase_development_CV
has related synonym: adult stage I
id: FBdv:00005370
comment: Temporal ordering number - 785. The time at which eclosed flies settle down for wing expansion can vary greatly. If they fail to find a suitable site then expansion can be delayed by several hours.

Axiom
annotated source: adult stage A1
annotated property: definition
annotated target: Newly eclosed adult stage. Animal free of pupal case. Runs rapidly to find site for wing expansion. Wings are folded back and black against a very pale abdomen.
database_cross_reference: FlyBase:FBrf0049147

adult stage A2
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: immature adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: adult stage A1
subclass of: Restriction
  on property: immediately precedes
  some values from: adult stage A3
definition: Stage, shortly after eclosion, during which the wings expand. During wing expansion, the abdomen pulsates and the hind legs stroke the wings vigorously for several minutes at a time. The stage ends when the wings are folded down over the abdomen, which has become broader and shorter, and the wing cuticle has lost its folds. The stage lasts around 15 minutes at 25'C.
has alternative id: FBdv:00005374
has OBO namespace: FlyBase_development_CV
has related synonym: adult stage II
id: FBdv:00005371
comment: Temporal ordering number - 790.

Axiom
annotated source: adult stage A2
annotated property: definition
annotated target: Stage, shortly after eclosion, during which the wings expand. During wing expansion, the abdomen pulsates and the hind legs stroke the wings vigorously for several minutes at a time. The stage ends when the wings are folded down over the abdomen, which has become broader and shorter, and the wing cuticle has lost its folds. The stage lasts around 15 minutes at 25'C.
database_cross_reference: FlyBase:FBrf0049147

pharate adult stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: substage of
  some values from: P-stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage P7
subclass of: Restriction
  on property: immediately precedes
  some values from: adult stage
subclass of: Restriction
  on property: immediately precedes
  some values from: adult stage A1
subclass of: Restriction
  on property: immediately precedes
  some values from: immature adult stage
definition: The developing adult after pupal-adult apolysis, i.e.- from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion. Duration at 25 degrees C: approximately 55.7 hours (164.3-220 hours after egg laying; 44.3-100 hours after puparium formation).
has OBO namespace: FlyBase_development_CV
id: FBdv:00006011
comment: Temporal ordering number - 625.

Axiom
annotated source: pharate adult stage
annotated property: definition
annotated target: The developing adult after pupal-adult apolysis, i.e.- from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion. Duration at 25 degrees C: approximately 55.7 hours (164.3-220 hours after egg laying; 44.3-100 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355
database_cross_reference: FlyBase:FBrf0049147

adult stage A3
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: immature adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: adult stage A2
subclass of: Restriction
  on property: immediately precedes
  some values from: mature adult stage
definition: Adult stage immediately after wing expansion, during which tanning of the cuticle is completed. This stage lasts approximately 45 minutes at 25'C.
has alternative id: FBdv:00005375
has OBO namespace: FlyBase_development_CV
has related synonym: adult stage III
id: FBdv:00006012
comment: Temporal ordering number - 800.

Axiom
annotated source: adult stage A3
annotated property: definition
annotated target: Adult stage immediately after wing expansion, during which tanning of the cuticle is completed. This stage lasts approximately 45 minutes at 25'C.
database_cross_reference: FlyBase:FBrf0049147

P-stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar larval stage L2
subclass of: Restriction
  on property: immediately preceded by
  some values from: late third instar larval stage
subclass of: Restriction
  on property: immediately precedes
  some values from: adult stage
subclass of: Restriction
  on property: immediately precedes
  some values from: adult stage A1
subclass of: Restriction
  on property: immediately precedes
  some values from: immature adult stage
definition: The stage of the Drosophila life-cycle from the formation of the puparium (beginning of the prepupal stage) to eclosion.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2008-06-05T04:51:40Z
has broad synonym: metamorphosis
has OBO namespace: FlyBase_development_CV
has related synonym: pupal stage
id: FBdv:00007001
comment: Temporal ordering number - 490. DISAMBIGUATION: In Drosophila lab vernacular, the term 'pupal stage' is often used to refer to the entire period from formation of the puparium to eclosion. However, this does not correspond to the standard usage of 'pupal stage' for cyclorrhaphous flies (for discussion see: FBrf0087128). Briefly: formation of the puparium (hardening of the larval cuticle) marks the beginning of the pre-pupal stage. The pupal stage begins following pupal/larval apolysis - detachment of the larval epidermis from the puparium. In Drosophila, the outward sign of the completion of apolysis is the eversion of the head an expulsion of the larval mouthparts (FBrf0036849). We use P-stage to refer to the stage from pupariation to eclosion, and restrict pupal stage to its standard usage.

Axiom
annotated source: P-stage
annotated property: definition
annotated target: The stage of the Drosophila life-cycle from the formation of the puparium (beginning of the prepupal stage) to eclosion.
database_cross_reference: FBC:DOS

third instar larval stage L1
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: late third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: wandering third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar - cleared gut stage
definition: Stage which begins when wandering third instar larva stops crawling. The larva everts its anterior spiracles during this stage.
has OBO namespace: FlyBase_development_CV
id: FBdv:00007004
comment: Temporal ordering number - 470.

Axiom
annotated source: third instar larval stage L1
annotated property: definition
annotated target: Stage which begins when wandering third instar larva stops crawling. The larva everts its anterior spiracles during this stage.
database_cross_reference: FlyBase:FBrf0036849

third instar larval stage L2
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: late third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar larval stage L1
definition: The anterior spiracles are fully everted, with 7-9 finger-like projections. The body shortens, withdrawing three apparent abdominal segments and the larva sticks to its substrate.
has exact synonym: spiracles everted larva
has OBO namespace: FlyBase_development_CV
has related synonym: white prepupa
id: FBdv:00007005
comment: Temporal ordering number - 480.

Axiom
annotated source: third instar larval stage L2
annotated property: definition
annotated target: The anterior spiracles are fully everted, with 7-9 finger-like projections. The body shortens, withdrawing three apparent abdominal segments and the larva sticks to its substrate.
database_cross_reference: FlyBase:FBrf0036849

Axiom
annotated source: third instar larval stage L2
annotated property: hasExactSynonym
annotated target: spiracles everted larva
database_cross_reference: FlyBase:FBrf0036849

Axiom
annotated source: third instar larval stage L2
annotated property: hasRelatedSynonym
annotated target: white prepupa
database_cross_reference: FlyBase:FBrf0036849

late third instar larval stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: early third instar larval stage
definition: Third instar larva from the beginning of wandering to the beginning of puparium formation.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2008-12-11T01:19:53Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007007
comment: Temporal ordering number - 450.

Axiom
annotated source: late third instar larval stage
annotated property: definition
annotated target: Third instar larva from the beginning of wandering to the beginning of puparium formation.
database_cross_reference: FBC:DOS

developmental process
type: Class
subclass of: biological process
definition: A biological process whose specific outcome is the progression of an integrated living unit (an anatomical structure or an entire organism) over time from an initial condition to a later condition.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2009-10-01T05:56:42Z
database_cross_reference: GO:0032502
has OBO namespace: FlyBase_development_CV
id: FBdv:00007009

Axiom
annotated source: developmental process
annotated property: definition
annotated target: A biological process whose specific outcome is the progression of an integrated living unit (an anatomical structure or an entire organism) over time from an initial condition to a later condition.
database_cross_reference: GO:0032502

embryonic cycle
type: Class
subclass of: biological process
subclass of: GO_0045448
definition: A cycle of nuclear division during the embryogenesis of Drosophila melanogaster. The first 13 cycles are synchronous throughout the embryo and occur their timing relative to other developmental processes is invariant. Later nuclear division cycles are asynchronous across the embryo although may be more locally synchronized.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2009-10-01T05:57:41Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007011

Axiom
annotated source: embryonic cycle
annotated property: definition
annotated target: A cycle of nuclear division during the embryogenesis of Drosophila melanogaster. The first 13 cycles are synchronous throughout the embryo and occur their timing relative to other developmental processes is invariant. Later nuclear division cycles are asynchronous across the embryo although may be more locally synchronized.
database_cross_reference: FlyBase:FBrf0049535
database_cross_reference: FlyBase:FBrf0089570

life stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: Drosophila life
definition: A temporal subdivision of a Drosophila life, delimited by major transitions in the circumstances of the organism, such as: fertilization; hatching; pupal ecdysis; eclosion.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2009-10-01T05:59:22Z
has exact synonym: life cycle stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00007012

Axiom
annotated source: life stage
annotated property: definition
annotated target: A temporal subdivision of a Drosophila life, delimited by major transitions in the circumstances of the organism, such as: fertilization; hatching; pupal ecdysis; eclosion.
database_cross_reference: FBC:DOS

age
type: Class
subclass of: BFO_0000003
definition: Temporal subdivision of life based on time elapsed since some key developmental transition, such as fertilization, hatching or eclosion.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2010-09-29T12:25:36Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007013

Axiom
annotated source: age
annotated property: definition
annotated target: Temporal subdivision of life based on time elapsed since some key developmental transition, such as fertilization, hatching or eclosion.
database_cross_reference: FBC:DOS

adult age in days
type: Class
subclass of: age
definition: Temporal subdivision of adulthood in days post-eclosion.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2010-09-29T12:28:05Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007014

Axiom
annotated source: adult age in days
annotated property: definition
annotated target: Temporal subdivision of adulthood in days post-eclosion.
database_cross_reference: FBC:DOS

embryonic stage 17(i)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 17
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 16
definition: The first two hours of embryonic stage 17 at 25'C. (Approximately 16-18 hours at 25'C after egg laying).
contributor: http://orcid.org/0000-0002-7073-9172
date: 2011-04-26T11:57:15Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007015
comment: Temporal ordering number - 391. Should not be used to stage embryos whose development is at temperatures other than 25'C.

Axiom
annotated source: embryonic stage 17(i)
annotated property: definition
annotated target: The first two hours of embryonic stage 17 at 25'C. (Approximately 16-18 hours at 25'C after egg laying).
database_cross_reference: FBC:DOS

embryonic stage 17(ii)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 17
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 17(i)
definition: Hours 2-4 of embryonic stage 17 at 25'C. (Approximately 18-20 hours at 25'C after egg laying).
contributor: http://orcid.org/0000-0002-7073-9172
date: 2011-04-26T12:00:15Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007016
comment: Temporal ordering number - 392. Should not be used to stage embryos whose development is at temperatures other than 25'C.

Axiom
annotated source: embryonic stage 17(ii)
annotated property: definition
annotated target: Hours 2-4 of embryonic stage 17 at 25'C. (Approximately 18-20 hours at 25'C after egg laying).
database_cross_reference: FBC:DOS

embryonic stage 17(iii)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 17
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 17(ii)
definition: Hours 4-6 of embryonic stage 17 at 25'C. (Approximately 20-22 hours at 25'C after egg laying).
contributor: http://orcid.org/0000-0002-7073-9172
date: 2011-04-26T12:01:18Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007017
comment: Temporal ordering number - 393. Should not be used to stage embryos whose development is at temperatures other than 25'C.

Axiom
annotated source: embryonic stage 17(iii)
annotated property: definition
annotated target: Hours 4-6 of embryonic stage 17 at 25'C. (Approximately 20-22 hours at 25'C after egg laying).
database_cross_reference: FBC:DOS

embryonic stage 17(iv)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 17
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 17(iii)
definition: Hours 6-8 (the last two hours) of embryonic stage 17 at 25'C. (Approximately 22-24 hours at 25'C after egg laying).
contributor: http://orcid.org/0000-0002-7073-9172
date: 2011-04-26T12:03:14Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007018
comment: Temporal ordering number - 394. Should not be used to stage embryos whose development is at temperatures other than 25'C.

Axiom
annotated source: embryonic stage 17(iv)
annotated property: definition
annotated target: Hours 6-8 (the last two hours) of embryonic stage 17 at 25'C. (Approximately 22-24 hours at 25'C after egg laying).
database_cross_reference: FBC:DOS

third instar - uncleared gut stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: wandering third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: early third instar larval stage
definition: The substage of the wandering third instar larval stage, prior to the beginning of clearance of the gut.
has OBO namespace: FlyBase_development_CV
id: FBdv:00007019
comment: Temporal ordering number - 462. This is commonly assayed by adding 0.5% bromophenol blue to the food and looking for wandering third instar larvae with the same color guts (dark blue) as feeding larvae (Andres and Thummel, 1994). Larvae at this stage are in chromosomal puff stage 1 (Andres and Thummel, 1994).

Axiom
annotated source: third instar - uncleared gut stage
annotated property: definition
annotated target: The substage of the wandering third instar larval stage, prior to the beginning of clearance of the gut.
database_cross_reference: FlyBase:FBrf0076598

third instar - partially cleared gut stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: wandering third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar - uncleared gut stage
definition: The substage of the wandering third instar larval stage when the larva has partially cleared its gut contents.
has OBO namespace: FlyBase_development_CV
id: FBdv:00007020
comment: Temporal ordering number - 465. This is commonly assayed by adding 0.5% bromophenol blue to the food and looking for wandering third instar larvae with lighter colored guts (light blue) than feeding larvae (Andres and Thummel, 1994). Larvae at this stage are mainly in chromosomal puff stages 2-7 (Andres and Thummel, 1994).

Axiom
annotated source: third instar - partially cleared gut stage
annotated property: definition
annotated target: The substage of the wandering third instar larval stage when the larva has partially cleared its gut contents.
database_cross_reference: FlyBase:FBrf0076598

third instar - cleared gut stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: wandering third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar - partially cleared gut stage
definition: The substage of the wandering third instar larval stage when the larva has cleared its gut contents.
has OBO namespace: FlyBase_development_CV
id: FBdv:00007021
comment: Temporal ordering number - 467. This is commonly assayed by adding 0.5% bromophenol blue to the food and looking for wandering third instar larvae with guts lacking any blue stain (Andres and Thummel, 1994). Larvae at this stage are mainly in chromosomal puff stages 7-9 and pupate within 1-6 hours (Andres and Thummel, 1994.

Axiom
annotated source: third instar - cleared gut stage
annotated property: definition
annotated target: The substage of the wandering third instar larval stage when the larva has cleared its gut contents.
database_cross_reference: FlyBase:FBrf0076598

biological process
type: Class
subclass of: BFO_0000003
definition: The execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module.
database_cross_reference: GO:0008150
has OBO namespace: FlyBase_development_CV
id: FBdv:00007024

Axiom
annotated source: biological process
annotated property: definition
annotated target: The execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module.
database_cross_reference: GO:0008150

immature adult stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: substage of
  some values from: day 0 of adulthood
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: P-stage
subclass of: Restriction
  on property: immediately precedes
  some values from: mature adult stage
definition: The developmental stage that lasts from eclosion of the adult from the pupal case until tanning is complete (the end of adult stage A3).
contributor: http://orcid.org/0000-0002-7073-9172
date: 2013-01-08T20:06:59Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007025
comment: Temporal ordering number - 782.

Axiom
annotated source: immature adult stage
annotated property: definition
annotated target: The developmental stage that lasts from eclosion of the adult from the pupal case until tanning is complete (the end of adult stage A3).
database_cross_reference: FBC:DOS

mature adult stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: adult stage A3
subclass of: Restriction
  on property: immediately preceded by
  some values from: immature adult stage
definition: Life stage from the end of adult stage A3, when tanning is complete, to death.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2013-01-10T13:03:54Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007026

Axiom
annotated source: mature adult stage
annotated property: definition
annotated target: Life stage from the end of adult stage A3, when tanning is complete, to death.
database_cross_reference: FBC:DOS

day 0 of adulthood
type: Class
subclass of: adult age in days
subclass of: Restriction
  on property: substage of
  some values from: adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P15
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P15(ii)
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: P-stage
definition: The day of eclosion.
has OBO namespace: FlyBase_development_CV
id: FBdv:00007075
comment: Temporal ordering number - 780.

Axiom
annotated source: day 0 of adulthood
annotated property: definition
annotated target: The day of eclosion.
database_cross_reference: FBC:DOS

early extended germ band stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: gastrula stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 8
definition: A collective term for stages 9 and 10.
has OBO namespace: FlyBase_development_CV
id: FBdv:00014201
comment: Temporal ordering number - 270.

Axiom
annotated source: early extended germ band stage
annotated property: definition
annotated target: A collective term for stages 9 and 10.
database_cross_reference: FBC:DOS

Drosophila melanogaster
type: Class
subclass of: invertebrate
IAO_0000111: Drosophila melanogaster
IAO_0000118: Sophophora melanogaster
IAO_0000118: fruit fly
IAO_0000412: ncbitaxon.owl

planned process
type: Class
equivalent class: Restriction
  on property: realizes
  some values from: Restriction
    on property: concretizes
    some values from: IAO_0000104
subclass of: BFO_0000015
IAO_0000111: planned process
IAO_0000112: Injecting mice with a vaccine in order to test its efficacy
IAO_0000114: IAO_0000122
definition: A process that realizes a plan which is the concretization of a plan specification.
IAO_0000116: 'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)
IAO_0000116: We are only considering successfully completed planned processes. A plan may be modified, and details added during execution. For a given planned process, the associated realized plan specification is the one encompassing all changes made during execution. This means that all processes in which an agent acts towards achieving some objectives is a planned process.
IAO_0000117: Bjoern Peters
IAO_0000119: branch derived
IAO_0000232: 6/11/9: Edited at workshop. Used to include: is initiated by an agent
IAO_0000232: This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call)

specimen role
type: Class
subclass of: BFO_0000023
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: BFO_0000040
    intersection of: Restriction
      on property: is_specified_output_of
      some values from: specimen collection process
IAO_0000111: specimen role
IAO_0000112: liver section; a portion of a culture of cells; a nemotode or other animal once no longer a subject (generally killed); portion of blood from a patient.
IAO_0000114: IAO_0000122
definition: a role borne by a material entity that is gained during a specimen collection process and that can be realized by use of the specimen in an investigation
IAO_0000116: 22Jun09. The definition includes whole organisms, and can include a human. The link between specimen role and study subject role has been removed. A specimen taken as part of a case study is not considered to be a population representative, while a specimen taken as representing a population, e.g. person taken from a cohort, blood specimen taken from an animal) would be considered a population representative and would also bear material sample role.
IAO_0000116: Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.
IAO_0000116: blood taken from animal: animal continues in study, whereas blood has role specimen. something taken from study subject, leaves the study and becomes the specimen.
IAO_0000116: parasite example - when parasite in people we study people, people are subjects and parasites are specimen - when parasite extracted, they become subject in the following study specimen can later be subject.
IAO_0000117: GROUP: Role Branch
IAO_0000119: OBI
IAO_0000233: https://github.com/obi-ontology/obi/issues/1013

specimen collection process
type: Class
equivalent class: Class
  intersection of: planned process
  intersection of: Restriction
    on property: achieves_planned_objective
    some values from: specimen collection objective
subclass of: planned process
subclass of: Restriction
  on property: has_specified_input
  some values from: BFO_0000040
subclass of: Restriction
  on property: has_specified_output
  some values from: specimen
IAO_0000111: specimen collection process
IAO_0000112: drawing blood from a patient for analysis, collecting a piece of a plant for depositing in a herbarium, buying meat from a butcher in order to measure its protein content in an investigation
IAO_0000114: IAO_0000122
definition: A planned process with the objective of collecting a specimen.
IAO_0000116: Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.
IAO_0000116: Philly2013: A specimen collection can have as part a material entity acquisition, such as ordering from a bank. The distinction is that specimen collection necessarily involves the creation of a specimen role. However ordering cell lines cells from ATCC for use in an investigation is NOT a specimen collection, because the cell lines already have a specimen role.
IAO_0000116: Philly2013: The specimen_role for the specimen is created during the specimen collection process.
IAO_0000116: label changed to 'specimen collection process' on 10/27/2014, details see tracker: http://sourceforge.net/p/obi/obi-terms/716/
IAO_0000117: Bjoern Peters
IAO_0000118: specimen collection
IAO_0000232: 5/31/2012: This process is not necessarily an acquisition, as specimens may be collected from materials already in posession
IAO_0000232: 6/9/09: used at workshop

specimen collection objective
type: Class
subclass of: IAO_0000005
IAO_0000111: specimen collection objective
IAO_0000112: The objective to collect bits of excrement in the rainforest. The objective to obtain a blood sample from a patient.
IAO_0000114: IAO_0000122
definition: A objective specification to obtain a material entity for potential use as an input during an investigation.
IAO_0000117: Bjoern Peters
IAO_0000119: Bjoern Peters

collection of specimens
type: Class
equivalent class: Class
  intersection of: BFO_0000040
  intersection of: Restriction
    on property: has member
    all values from: specimen
subclass of: BFO_0000040
IAO_0000111: collection of specimens
IAO_0000112: Blood cells collected from multiple donors over the course of a study.
IAO_0000114: IAO_0000125
definition: A material entity that has two or more specimens as its parts.
IAO_0000116: Details see tracker: https://sourceforge.net/p/obi/obi-terms/778/
IAO_0000117: Person: Chris Stoeckert, Jie Zheng
IAO_0000119: OBIB, OBI
source: Biobank

specimen
type: Class
equivalent class: Class
  intersection of: BFO_0000040
  intersection of: Restriction
    on property: has role
    some values from: specimen role
subclass of: BFO_0000040
IAO_0000111: specimen
IAO_0000112: Biobanking of blood taken and stored in a freezer for potential future investigations stores specimen.
IAO_0000114: IAO_0000122
definition: A material entity that has the specimen role.
IAO_0000116: Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.
IAO_0000117: PERSON: James Malone
IAO_0000117: PERSON: Philippe Rocca-Serra
IAO_0000119: GROUP: OBI Biomaterial Branch
IAO_0000233: https://github.com/obi-ontology/obi/issues/1013

eukaryote
type: Class
subclass of: cellular organisms
definition: This includes fungi, vertebrates and invertebrates. Eukaryotic cells have a well-defined nucleus and membrane enveloped organelles namely, mitochondria, endoplasmic reticulum, golgi apparatus, and lysosomes.

invertebrate
type: Class
subclass of: metazoa
definition: These animals lack a vertebral column and many of which are used as model organisms in HTS screening including Drosophila, C.elegans, sea urchin, etc.

organism
type: Class
subclass of: assay biology component
definition: The organism related to the target / meta-target of the bioassay. It includes both bacterium and eukaryote.

cellular organisms
type: Class
subclass of: organism
definition: This includes all organisms which are made up of cells, e.g. bacteria, plants and animals.

metazoa
type: Class
subclass of: eukaryote
definition: Metazoa comprises of animals, which are multicellular eukaryotic organisms. This includes those having a vertebral column (e.g. fish, frog, snake, bird, human) and those that do not (e.g. worm, fly, star fish, etc).

assay biology component
type: Class

RNAseq_2020_Davis
type: NamedIndividual
type: project
node label: DataSet
definition: A study using TAPIN RNA sequencing to build high resolution transcriptomes from selected adult optic lobe neurons.
licence: VFBlicense CC BY 4 0
references: FBrf0244935
database_cross_reference: ExpressionAtlas
database_cross_reference: GEO

Axiom
annotated source: RNAseq_2020_Davis
annotated property: database_cross_reference
annotated target: ExpressionAtlas
accession: E-GEOD-116969

Axiom
annotated source: RNAseq_2020_Davis
annotated property: database_cross_reference
annotated target: GEO
accession: GSE116969

RNAseq_2020_DavisMi15_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0123000FBtp0118506
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMi15_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0123000FBtp0118506
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm11_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121197FBtp0120547
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm9_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0123320FBtp0108721
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm9_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0123320FBtp0108721
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm10_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122182FBtp0119035
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm10_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122182FBtp0119035
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTmY3_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121090FBtp0099557
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT4.T5_d1_female_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121740FBtp0118967
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT4.T5_d1_female_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121740FBtp0118967
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT4.T5_d1_male_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121740FBtp0118967
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT4.T5_d1_male_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121740FBtp0118967
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMuscles_Head_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0057350
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMuscles_Head_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0057350
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMuscles_Head_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBti0150063
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMuscles_Head_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBti0150063
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMuscles_App_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBti0150063
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMuscles_App_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBti0150063
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm12_d1_rep4
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122419FBtp0119231
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm12_d1_rep3
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122419FBtp0119231
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm1_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122198FBtp0118527
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm1_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122198FBtp0118527
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC10bc_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117210FBtp0117187
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC10bc_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117210FBtp0117187
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC10d_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117233FBtp0117202
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC10d_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117233FBtp0117202
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMi15_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099169FBtp0118901
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMi15_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099169FBtp0118901
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMi9_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117218FBtp0133741
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMi9_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117218FBtp0133741
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMi9_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0124633FBtp0118805
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMi9_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0124633FBtp0118805
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisVGlut_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBti0168144
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisVGlut_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBti0168144
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisChAT_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBti0168134
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisChAT_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBti0168134
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisGad1_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBti0168170
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisGad1_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBti0168170
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTm2_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122360FBtp0118528
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTm2_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122360FBtp0118528
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMi4_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121163FBtp0118805
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMi4_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121163FBtp0118805
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTm4_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122056FBtp0118897
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTm4_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122056FBtp0118897
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTm3_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117531FBtp0118226
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTm3_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117531FBtp0118226
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMi1_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122182FBtp0118332
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMi1_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122182FBtp0118332
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLPLC1_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117216FBtp0117191
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC16_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117217FBtp0117249
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC16_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117217FBtp0117249
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC16_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117221FBtp0117186
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC16_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117221FBtp0117186
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm4_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099171FBtp0118201
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm4_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099171FBtp0118201
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC10b_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0123436FBtp0119362
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC10b_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0123436FBtp0119362
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLPC1_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0124374FBtp0119198
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLPC1_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0124374FBtp0119198
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC10a_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117211FBtp0117187
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC10a_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117211FBtp0117187
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLPC1_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0123925FBtp0119198
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLPC1_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0123925FBtp0119198
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLLPC1_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0124964FBtp0120735
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLLPC1_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0124964FBtp0120735
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPm4_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121945FBtp0117253
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPm4_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121945FBtp0117253
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm11_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121197FBtp0120547
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTmY5a_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122214FBtp0118485
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTmY5a_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122214FBtp0118485
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisR1-6_d1_rep4
type: NamedIndividual
type: biosample
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisR1-6_d1_rep3
type: NamedIndividual
type: biosample
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisR7_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0014423
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisR7_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0014423
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisR8_Rh6_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0015152
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisR8_Rh6_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0015152
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisCrz_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0083990
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisR8_Rh5_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0012866
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisR8_Rh5_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0012866
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisR7_Rh3_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0015861
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisR7_Rh3_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0015861
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKdm2_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBti0004283
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKdm2_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBti0004283
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisCrz_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0083990
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisIlp2_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0015862
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisIlp2_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0015862
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDsk_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0087654
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDsk_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0087654
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisNPF_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0018000
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisNPF_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0018000
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTm1_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122237FBtp0118721
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisC2_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0093499FBtp0093502
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisC2_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0093499FBtp0093502
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL5_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099181FBtp0099403
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL5_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099181FBtp0099403
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL4_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099177FBtp0099401
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL3_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099173FBtp0099399
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL3_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099173FBtp0099399
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL2_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0093500FBtp0099396
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL2_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0093500FBtp0099396
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL1_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099166FBtp0099395
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL1_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099166FBtp0099395
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL1_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099166FBtp0099395
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL1_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099166FBtp0099395
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTm9_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122157FBtp0118445
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTm9_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122157FBtp0118445
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_apbp_m_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099476FBtp0099536
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_apbp_ap_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117486FBtp0099542
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_apbp_ap_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117486FBtp0099542
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_gd_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099482FBtp0099525
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_gd_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099482FBtp0099525
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm3_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121544FBtp0119119
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm3_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121544FBtp0119119
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLawf1_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121208FBtp0099407
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLawf1_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121208FBtp0099407
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTm20_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122345FBtp0118715
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTm20_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122345FBtp0118715
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm8_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121416FBtp0093492
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm8_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121416FBtp0093492
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTm29_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122203FBtp0118486
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTm29_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122203FBtp0118486
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisGlia_Eg_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121729FBtp0118643
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisGlia_Eg_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121729FBtp0118643
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisGlia_Eg_d3_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121986FBtp0118727
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisGlia_Eg_d3_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121986FBtp0118727
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisGlia_Eg_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121986FBtp0118643
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisGlia_Eg_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121986FBtp0118643
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisGlia_Psg_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117263FBtp0118727
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisGlia_Psg_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117263FBtp0118727
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisGlia_Psg_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117263FBtp0118655
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisGlia_Psg_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117263FBtp0118655
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisGlia_Mg_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122095FBtp0118631
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTmY3_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121090FBtp0099557
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_6_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099467FBtp0099550
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_6_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099467FBtp0099550
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT4.T5_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121740FBtp0118967
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT4.T5_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121740FBtp0118967
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT4.T5_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121740FBtp0120861
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT4.T5_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121740FBtp0120861
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT5_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0124379FBtp0118438
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT5_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0124379FBtp0118438
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT5_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121828FBtp0120861
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT5_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121828FBtp0120861
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT4_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121740FBtp0119787
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT4_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121740FBtp0119787
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT4_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121686FBtp0119787
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT4_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121686FBtp0119787
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_3_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099479FBtp0099561
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_3_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099479FBtp0099561
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMBON_bp1_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099498FBtp0099562
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMBON_bp1_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099498FBtp0099562
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_1_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099469FBtp0099561
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_1_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099469FBtp0099561
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_5_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099488FBtp0099551
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_5_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099488FBtp0099551
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_4_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099451FBtp0099550
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_4_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099451FBtp0099550
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_8_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099487FBtp0099540
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_8_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099487FBtp0099540
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_9_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117254FBtp0117252
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_9_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117254FBtp0117252
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_7_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099478FBtp0099551
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_7_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099478FBtp0099551
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_ab_c_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099500FBtp0117485
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_ab_c_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099500FBtp0117485
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_ab_s_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099462FBtp0117484
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_ab_s_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099462FBtp0117484
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_ab_c.p.s_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099485FBtp0117485
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_ab_c.p.s_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099485FBtp0117485
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_ab_p_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099508FBtp0117485
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_ab_p_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099508FBtp0117485
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_apbp_m_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099476FBtp0099536
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLPLC1_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117216FBtp0117191
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_gd_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099482FBtp0099536
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisKC_gd_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099482FBtp0099536
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLat_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099200FBtp0118427
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLat_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099200FBtp0118427
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMBON_g1pedc_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099456FBtp0099565
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisMBON_g1pedc_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099456FBtp0099565
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavislLNv_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121105FBtp0118989
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavislLNv_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121105FBtp0118989
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPdf_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0011844
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPdf_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0011844
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisNPF_d1_rep4
type: NamedIndividual
type: biosample
type: VFBexp FBtp0018000
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisNPF_d1_rep3
type: NamedIndividual
type: biosample
type: VFBexp FBtp0018000
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisCCAP_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0017683
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisCCAP_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0017683
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLPTC_HS.VS_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121620FBtp0120920
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLPTC_HS.VS_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121620FBtp0120920
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisTm1_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122237FBtp0118721
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm12_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122419FBtp0119231
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm12_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122419FBtp0119231
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisR1-6_d1_rep2
type: NamedIndividual
type: biosample
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisR1-6_d1_rep1
type: NamedIndividual
type: biosample
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisC2.C3_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099184FBtp0093502
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisC2.C3_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099184FBtp0093502
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL1.L2_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0093500FBtp0099395
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL1.L2_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0093500FBtp0099395
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL1.L2_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0093500FBtp0099394
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL1.L2_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0093500FBtp0099394
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLai_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122468FBtp0118915
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLai_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122468FBtp0118915
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT1_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099188FBtp0099406
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisT1_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099188FBtp0099406
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLawf2_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099194FBtp0099409
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLawf2_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099194FBtp0099409
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLawf1_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099191FBtp0099408
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLawf1_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099191FBtp0099408
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisL4_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099177FBtp0099401
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisC3_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0093500FBtp0093501
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisC3_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0093500FBtp0093501
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_2_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099481FBtp0099550
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPAM_2_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0099481FBtp0099550
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisGlia_Mg_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122095FBtp0118631
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPB_6_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121203FBtp0118276
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPB_6_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121203FBtp0118276
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPB_3_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121835FBtp0118557
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPB_3_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121835FBtp0118557
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLPi-34_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0124560FBtp0120983
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLPi-34_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0124560FBtp0120983
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPB_1_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121143FBtp0117204
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPB_1_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121143FBtp0117204
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPB_2_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121198FBtp0117182
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPB_2_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121198FBtp0117182
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPB_5_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0123227FBtp0118276
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPB_5_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0123227FBtp0118276
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPm3_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122101FBtp0119072
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPm3_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122101FBtp0119072
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPB_4_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121143FBtp0119017
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPB_4_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121143FBtp0119017
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC4_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121864FBtp0119101
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC4_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121864FBtp0119101
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC6_d2_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117244FBtp0117246
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPB_4_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121321FBtp0119801
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisPB_4_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0121321FBtp0119801
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm4_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122158FBtp0118899
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisDm4_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0122158FBtp0118899
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC6_d2_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117244FBtp0117246
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC6_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117210FBtp0117195
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLC6_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117210FBtp0117195
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLPLC2_d1_rep2
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117228FBtp0117182
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis

RNAseq_2020_DavisLPLC2_d1_rep1
type: NamedIndividual
type: biosample
type: VFBexp FBtp0117228FBtp0117182
type: Restriction
  on property: overlaps
  some values from: head
type: Restriction
  on property: existence overlaps
  some values from: adult stage
node label: Sample
source: RNAseq_2020_Davis