VFB scRNAseq Ontology for dataset FBlc0006361
type: Ontology
description: An ontology of Drosophila melanogaster scRNAseq data from a single dataset (FBlc0006361). This information is taken from FlyBase, which sources it from the EMBL-EBI Single Cell Expression Atlas, which compiles scRNAseq data from multiple sources.

definition
type: AnnotationProperty
IAO_0000111: definition
IAO_0000114: IAO_0000122
definition: A property representing the English language definitions of what NCI means by the concept. They may also include information about the definition's source and attribution in a form that can easily be interpreted by software.
definition: The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
definition: The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
definition: The official definition.
IAO_0000116: 2012-04-05: Barry Smith The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. Can you fix to something like: A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. Alan Ruttenberg Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. On the specifics of the proposed definition: We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
IAO_0000117: PERSON:Daniel Schober
IAO_0000119: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
has exact synonym: DEFINITION
label: textual definition

is a defining property chain axiom
type: AnnotationProperty
definition: If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL

is a defining property chain axiom where second argument is reflexive
type: AnnotationProperty
definition: If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.

database_cross_reference
type: AnnotationProperty
IAO_0000112: disease characteristic (MONDO:0021125) has cross-reference (http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NCIT:C41009"^^xsd:string
definition: An annotation property that links an ontology entity or a statement to a prefixed identifier or URI.
definition: Reference database or publication source.
IAO_0000233: https://github.com/information-artifact-ontology/ontology-metadata/issues/123
contributor: https://orcid.org/0000-0002-7356-1779
label: has cross-reference

part of
type: ObjectProperty
sub property of: overlaps
inverse of: has part
type: TransitiveProperty
IAO_0000111: is part of
IAO_0000112: my brain is part of my body (continuant parthood, two material entities)
IAO_0000112: my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)
IAO_0000112: this day is part of this year (occurrent parthood)
definition: a core relation that holds between a part and its whole
IAO_0000116: Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.
IAO_0000116: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
IAO_0000116: Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.
IAO_0000118: part_of
RO_0001900: RO_0001901
RO_0040042: BFO_0000002
RO_0040042: BFO_0000003
RO_0040042: BFO_0000004
RO_0040042: BFO_0000017
RO_0040042: BFO_0000019
RO_0040042: BFO_0000020
RO_0040042: BFO_0000031
in subset: valid for go annotation extension
in subset: valid for go gp2term
in subset: valid for go ontology
in subset: valid for gocam

has part
type: ObjectProperty
sub property of: overlaps
type: TransitiveProperty
IAO_0000111: has part
IAO_0000112: my body has part my brain (continuant parthood, two material entities)
IAO_0000112: my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)
IAO_0000112: this year has part this day (occurrent parthood)
definition: a core relation that holds between a whole and its part
IAO_0000116: Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
IAO_0000116: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
IAO_0000116: Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
IAO_0000118: has_part
RO_0001900: RO_0001901
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam

realized in
type: ObjectProperty
inverse of: realizes
domain: BFO_0000017
range: BFO_0000015
IAO_0000111: realized in
IAO_0000112: this disease is realized in this disease course
IAO_0000112: this fragility is realized in this shattering
IAO_0000112: this investigator role is realized in this investigation
IAO_0000118: is realized by
IAO_0000118: realized_in
IAO_0000600: [copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
comment: Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

realizes
type: ObjectProperty
domain: BFO_0000015
range: BFO_0000017
IAO_0000111: realizes
IAO_0000112: this disease course realizes this disease
IAO_0000112: this investigation realizes this investigator role
IAO_0000112: this shattering realizes this fragility
definition: Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
IAO_0000600: to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
comment: Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

preceded by
type: ObjectProperty
sub property of: ends after
inverse of: precedes
type: TransitiveProperty
domain: BFO_0000003
range: BFO_0000003
property chain axiom: part of
property chain axiom: starts during
property chain axiom: happens during
IAO_0000111: preceded by
definition: x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
IAO_0000116: An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
IAO_0000118: is preceded by
IAO_0000118: preceded_by
source: http://www.obofoundry.org/ro/#OBO_REL:preceded_by
in subset: ro-eco

precedes
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
domain: BFO_0000003
range: BFO_0000003
property chain axiom: part of
property chain axiom: happens during
IAO_0000111: precedes
definition: x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
in subset: ro-eco

substage of
type: ObjectProperty
sub property of: occurrent part of
sub property of: happens during
type: TransitiveProperty
definition: A relation between a developmental stage and another, larger developmental stage during which it happens.
has OBO namespace: relationship
id: FBdv:00018001
comment: Creating this relation as a temporary fix, pending adding the axiom occurrent_part_of subproperty of happens_during to RO.

Axiom
annotated source: substage of
annotated property: definition
annotated target: A relation between a developmental stage and another, larger developmental stage during which it happens.
database_cross_reference: FBC:DPG

has specified input
type: ObjectProperty
sub property of: has participant
inverse of: is specified input of
domain: planned process
IAO_0000111: has specified input
IAO_0000112: see is_input_of example_of_usage
IAO_0000114: IAO_0000122
definition: The inverse property of is specified input of
IAO_0000116: 8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Larry Hunter
IAO_0000117: PERSON: Melanie Coutot

is specified input of
type: ObjectProperty
sub property of: participates in
range: planned process
IAO_0000111: is specified input of
IAO_0000112: some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay
IAO_0000114: IAO_0000122
definition: A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.
IAO_0000117: Alan Ruttenberg
IAO_0000117: PERSON:Bjoern Peters

has specified output
type: ObjectProperty
sub property of: has participant
inverse of: is specified output of
domain: planned process
IAO_0000111: has specified output
IAO_0000114: IAO_0000122
definition: The inverse property of is specified output of
IAO_0000117: PERSON: Alan Ruttenberg
IAO_0000117: PERSON: Bjoern Peters
IAO_0000117: PERSON: Larry Hunter
IAO_0000117: PERSON: Melanie Courtot

is specified output of
type: ObjectProperty
sub property of: participates in
range: planned process
IAO_0000111: is specified output of
IAO_0000114: IAO_0000122
definition: A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.
IAO_0000117: Alan Ruttenberg
IAO_0000117: PERSON:Bjoern Peters

achieves_planned_objective
type: ObjectProperty
inverse of: objective_achieved_by
domain: planned process
range: IAO_0000005
IAO_0000111: achieves_planned_objective
IAO_0000112: A cell sorting process achieves the objective specification 'material separation objective'
IAO_0000114: IAO_0000120
definition: This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process.
IAO_0000117: BP, AR, PPPB branch
IAO_0000119: PPPB branch derived
IAO_0000232: modified according to email thread from 1/23/09 in accordince with DT and PPPB branch

objective_achieved_by
type: ObjectProperty
domain: IAO_0000005
range: planned process
IAO_0000111: objective_achieved_by
IAO_0000114: IAO_0000122
definition: This relation obtains between an objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process.
IAO_0000117: OBI
IAO_0000119: OBI

characteristic of
type: ObjectProperty
sub property of: characteristic of part of
inverse of: has characteristic
type: FunctionalProperty
IAO_0000111: inheres in
IAO_0000112: this fragility is a characteristic of this vase
IAO_0000112: this red color is a characteristic of this apple
definition: a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.
IAO_0000118: inheres_in
RO_0001900: RO_0001901
comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.

has characteristic
type: ObjectProperty
type: InverseFunctionalProperty
range: BFO_0000020
IAO_0000111: bearer of
IAO_0000112: this apple is bearer of this red color
IAO_0000112: this vase is bearer of this fragility
definition: Inverse of characteristic_of
IAO_0000116: A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.
IAO_0000118: bearer_of
IAO_0000118: is bearer of
RO_0001900: RO_0001901

participates in
type: ObjectProperty
inverse of: has participant
domain: BFO_0000002
range: BFO_0000003
IAO_0000111: participates in
IAO_0000112: this blood clot participates in this blood coagulation
IAO_0000112: this input material (or this output material) participates in this process
IAO_0000112: this investigator participates in this investigation
definition: a relation between a continuant and a process, in which the continuant is somehow involved in the process
IAO_0000118: participates_in

has participant
type: ObjectProperty
domain: BFO_0000003
range: BFO_0000002
property chain axiom: has part
property chain axiom: realizes
property chain axiom: characteristic of
IAO_0000111: has participant
IAO_0000112: this blood coagulation has participant this blood clot
IAO_0000112: this investigation has participant this investigator
IAO_0000112: this process has participant this input material (or this output material)
definition: a relation between a process and a continuant, in which the continuant is somehow involved in the process
IAO_0000116: Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
IAO_0000118: has_participant
source: http://www.obofoundry.org/ro/#OBO_REL:has_participant

is concretized as
type: ObjectProperty
inverse of: concretizes
domain: BFO_0000031
range: Class
  union of: BFO_0000015
  union of: BFO_0000020
IAO_0000112: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
IAO_0000112: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
definition: A relationship between a generically dependent continuant and a specifically dependent continuant or process, in which the generically dependent continuant depends on some independent continuant or process in virtue of the fact that the specifically dependent continuant or process also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants or processes.

concretizes
type: ObjectProperty
domain: Class
  union of: BFO_0000015
  union of: BFO_0000020
range: BFO_0000031
IAO_0000112: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
IAO_0000112: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
definition: A relationship between a specifically dependent continuant or process and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant or process also depends on that same independent continuant. Multiple specifically dependent continuants or processes can concretize the same generically dependent continuant.

role of
type: ObjectProperty
sub property of: characteristic of
inverse of: has role
IAO_0000112: this investigator role is a role of this person
definition: a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence
IAO_0000116: A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.
IAO_0000118: is role of
IAO_0000118: role_of
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

has role
type: ObjectProperty
sub property of: has characteristic
domain: BFO_0000004
range: BFO_0000023
IAO_0000112: this person has role this investigator role (more colloquially: this person has this role of investigator)
definition: a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence
IAO_0000116: A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.
IAO_0000118: has_role

innervated by
type: ObjectProperty
inverse of: innervates
domain: anatomical structure
range: UBERON_0000122
definition: relation between an anatomical structure and a neuron projection bundle that has synaptic terminals in the structure.
IAO_0000117: https://orcid.org/0000-0002-7073-9172
cites as authority: http://www.ncbi.nlm.nih.gov/pubmed/22402613

has synaptic terminal of
type: ObjectProperty
sub property of: overlaps
inverse of: has synaptic terminal in
IAO_0000117: https://orcid.org/0000-0002-7073-9172
cites as authority: http://www.ncbi.nlm.nih.gov/pubmed/22402613

occurrent part of
type: ObjectProperty
sub property of: part of
sub property of: causally upstream of or within
domain: BFO_0000003
range: BFO_0000003
definition: A part of relation that applies only between occurrents.

during which ends
type: ObjectProperty
sub property of: temporally related to
inverse of: ends during
IAO_0000117: https://orcid.org/0000-0002-7073-9172
in subset: ro-eco
comment: Previously had ID http://purl.obolibrary.org/obo/RO_0002122 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.

encompasses
type: ObjectProperty
sub property of: during which starts
inverse of: happens during
type: TransitiveProperty
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000118: di
comment: Previously had ID http://purl.obolibrary.org/obo/RO_0002124 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.

ends after
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
property chain axiom: ends during
property chain axiom: preceded by
IAO_0000117: https://orcid.org/0000-0002-7073-9172
in subset: ro-eco
comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)

immediately preceded by
type: ObjectProperty
sub property of: preceded by
inverse of: immediately precedes
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000118: starts_at_end_of
comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)

during which starts
type: ObjectProperty
sub property of: temporally related to
inverse of: starts during
IAO_0000117: https://orcid.org/0000-0002-7073-9172
in subset: ro-eco
comment: Previously had ID http://purl.obolibrary.org/obo/RO_0002123 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.

immediately precedes
type: ObjectProperty
sub property of: precedes
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000118: ends_at_start_of
IAO_0000118: meets
RO_0002575: precedes
in subset: ro-eco
comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)

starts during
type: ObjectProperty
sub property of: temporally related to
domain: BFO_0000003
range: BFO_0000003
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000118: io
in subset: ro-eco
comment: X starts_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (start(X) before_or_simultaneous_with end(Y))

happens during
type: ObjectProperty
sub property of: starts during
sub property of: ends during
type: TransitiveProperty
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000118: d
IAO_0000118: during
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam
in subset: ro-eco
comment: X happens_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (end(X) before_or_simultaneous_with end(Y))

ends during
type: ObjectProperty
sub property of: temporally related to
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000118: o
IAO_0000118: overlaps
in subset: ro-eco
comment: X ends_during Y iff: ((start(Y) before_or_simultaneous_with end(X)) AND end(X) before_or_simultaneous_with end(Y).

has soma location
type: ObjectProperty
sub property of: overlaps
domain: CL_0000540
range: UBERON_0000465
property chain axiom: part of
property chain axiom: is neuron
property chain axiom: is anatomical entity
IAO_0000114: IAO_0000125
definition: Relation between a neuron and a material anatomical entity that its soma is part of.
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000424: <http://purl.obolibrary.org/obo/BFO_0000051> some ( <http://purl.obolibrary.org/obo/GO_0043025> and <http://purl.obolibrary.org/obo/BFO_0000050> some ?Y)
RO_0001900: RO_0001901

fasciculates with
type: ObjectProperty
sub property of: overlaps
inverse of: has fasciculating neuron projection
domain: CL_0000540
range: UBERON_0000122
IAO_0000114: IAO_0000125
definition: relationship between a neuron and a neuron projection bundle (e.g.- tract or nerve bundle) that one or more of its projections travels through.
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000118: fasciculates with
IAO_0000426: (forall (?x ?y) (iff (fasciculates_with ?x ?y) (exists (?nps ?npbs) (and ("neuron ; CL_0000540" ?x) ("neuron projection bundle ; CARO_0001001" ?y) ("neuron projection segment ; CARO_0001502" ?nps) ("neuron projection bundle segment ; CARO_0001500' " ?npbs) (part_of ?npbs ?y) (part_of ?nps ?x) (part_of ?nps ?npbs) (forall (?npbss) (if (and ("neuron projection bundle subsegment ; CARO_0001501" ?npbss) (part_of ?npbss ?npbs) ) (overlaps ?nps ?npbss) ))))))
RO_0001900: RO_0001901
cites as authority: http://www.ncbi.nlm.nih.gov/pubmed/22402613

synapsed by
type: ObjectProperty
sub property of: receives input from
inverse of: synapsed to
range: Class
  union of: CL_0000540
  union of: Restriction
    on property: part of
    some values from: CL_0000540
IAO_0000114: IAO_0000125
definition: Relation between an anatomical structure (including cells) and a neuron that chemically synapses to it.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000424: <http://purl.obolibrary.org/obo/BFO_0000051> some (<http://purl.obolibrary.org/obo/GO_0045211> that part_of some (<http://purl.obolibrary.org/obo/GO_0045202> that has_part some (<http://purl.obolibrary.org/obo/GO_0042734> that <http://purl.obolibrary.org/obo/BFO_0000050> some Y?)))
RO_0001900: RO_0001901
cites as authority: http://www.ncbi.nlm.nih.gov/pubmed/22402613

has postsynaptic terminal in
type: ObjectProperty
sub property of: has synaptic terminal in
inverse of: has presynaptic terminal in
domain: CL_0000540
property chain axiom: part of
IAO_0000114: IAO_0000125
definition: Relation between a neuron and some structure (e.g.- a brain region) in which it receives (chemical) synaptic input.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000118: synapsed in
IAO_0000424: http://purl.obolibrary.org/obo/BFO_0000051 some ( http://purl.org/obo/owl/GO#GO_0045211 and http://purl.obolibrary.org/obo/BFO_0000050 some ( http://purl.org/obo/owl/GO#GO_0045202 and http://purl.obolibrary.org/obo/BFO_0000050 some ?Y))
RO_0001900: RO_0001901
cites as authority: http://www.ncbi.nlm.nih.gov/pubmed/22402613

has presynaptic terminal in
type: ObjectProperty
sub property of: has synaptic terminal in
domain: CL_0000540
property chain axiom: part of
IAO_0000114: IAO_0000125
definition: Relation between a neuron and some structure (e.g.- a brain region) in which it receives (chemical) synaptic input.
IAO_0000118: synapses in
IAO_0000424: <http://purl.obolibrary.org/obo/BFO_0000051> some (<http://purl.obolibrary.org/obo/GO_0042734> that <http://purl.obolibrary.org/obo/BFO_0000050> some (<http://purl.obolibrary.org/obo/GO_0045202> that <http://purl.obolibrary.org/obo/BFO_0000050> some Y?)
RO_0001900: RO_0001901
cites as authority: http://www.ncbi.nlm.nih.gov/pubmed/22402613

synapsed to
type: ObjectProperty
sub property of: sends output to
domain: Class
  union of: CL_0000540
  union of: Restriction
    on property: part of
    some values from: CL_0000540
IAO_0000114: IAO_0000125
definition: Relation between a neuron and an anatomical structure (including cells) that it chemically synapses to.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000424: <http://purl.obolibrary.org/obo/BFO_0000051> some (<http://purl.obolibrary.org/obo/GO_0042734> that part_of some (<http://purl.obolibrary.org/obo/GO_0045202> that <http://purl.obolibrary.org/obo/BFO_0000051> some (<http://purl.obolibrary.org/obo/GO_0045211> that <http://purl.obolibrary.org/obo/BFO_0000050> some Y?)))
RO_0001900: RO_0001901
cites as authority: http://www.ncbi.nlm.nih.gov/pubmed/22402613
comment: N1 synapsed_to some N2 Expands to: N1 SubclassOf ( has_part some ( ‘pre-synaptic membrane ; GO:0042734’ that part_of some ( ‘synapse ; GO:0045202’ that has_part some ( ‘post-synaptic membrane ; GO:0045211’ that part_of some N2))))

has synaptic terminal in
type: ObjectProperty
sub property of: overlaps
domain: CL_0000540
property chain axiom: part of
IAO_0000114: IAO_0000125
definition: A general relation between a neuron and some structure in which it either chemically synapses to some target or in which it receives (chemical) synaptic input.
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000118: has synapse in
IAO_0000424: <http://purl.obolibrary.org/obo/RO_0002131> some (<http://purl.obolibrary.org/obo/GO_0045202> that <http://purl.obolibrary.org/obo/BFO_0000050> some Y?)
RO_0001900: RO_0001901
cites as authority: http://www.ncbi.nlm.nih.gov/pubmed/22402613

overlaps
type: ObjectProperty
sub property of: mereotopologically related to
type: SymmetricProperty
property chain axiom: part of
property chain axiom: has part
IAO_0000114: IAO_0000125
definition: x overlaps y if and only if there exists some z such that x has part z and z part of y
IAO_0000424: http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)
RO_0001900: RO_0001901
in subset: valid for go annotation extension
in subset: valid for gocam
in subset: ro-eco

Axiom
annotated source: overlaps
annotated property: propertyChainAxiom
annotated target: has part
annotated target: part of
RO_0002582: true

has fasciculating neuron projection
type: ObjectProperty
sub property of: overlaps
domain: UBERON_0000122
range: Class
  union of: CL_0000540
  union of: Restriction
    on property: part of
    some values from: CL_0000540
IAO_0000114: IAO_0000125
definition: The relation between a neuron projection bundle and a neuron projection that is fasciculated with it.
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000118: has fasciculating component
IAO_0000426: (forall (?x ?y) (iff (has_fasciculating_neuron_projection ?x ?y) (exists (?nps ?npbs) (and ("neuron projection bundle ; CARO_0001001" ?x) ("neuron projection ; GO0043005" ?y) ("neuron projection segment ; CARO_0001502" ?nps) ("neuron projection bundle segment ; CARO_0001500" ?npbs) (part_of ?nps ?y) (part_of ?npbs ?x) (part_of ?nps ?npbs) (forall (?npbss) (if (and ("neuron projection bundle subsegment ; CARO_0001501" ?npbss) (part_of ?npbss ?npbs) ) (overlaps ?nps ?npbss) ))))))
RO_0001900: RO_0001901
cites as authority: http://www.ncbi.nlm.nih.gov/pubmed/22402613

innervates
type: ObjectProperty
domain: UBERON_0000122
property chain axiom: part of
IAO_0000114: IAO_0000125
definition: Relation between a 'neuron projection bundle' and a region in which one or more of its component neuron projections either synapses to targets or receives synaptic input. T innervates some R Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000424: <http://purl.obolibrary.org/obo/RO_0002132> some (<http://purl.obolibrary.org/obo/GO_0043005> that (<http://purl.obolibrary.org/obo/RO_0002131> some (<http://purl.obolibrary.org/obo/GO_0045202> that <http://purl.obolibrary.org/obo/BFO_0000050> some Y?)))
RO_0001900: RO_0001901
cites as authority: http://www.ncbi.nlm.nih.gov/pubmed/22402613

continuous with
type: ObjectProperty
sub property of: mereotopologically related to
type: SymmetricProperty
domain: BFO_0000004
range: BFO_0000004
IAO_0000114: IAO_0000125
definition: X continuous_with Y if and only if X and Y share a fiat boundary.
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000118: connected to
IAO_0000232: The label for this relation was previously connected to. I relabeled this to "continuous with". The standard notion of connectedness does not imply shared boundaries - e.g. Glasgow connected_to Edinburgh via M8; my patella connected_to my femur (via patellar-femoral joint)
RO_0001900: RO_0001901

connected to
type: ObjectProperty
sub property of: mereotopologically related to
domain: Restriction
  on property: part of
  some values from: system
range: Restriction
  on property: part of
  some values from: system
IAO_0000112: a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones).
definition: a is connected to b if and only if a and b are discrete structure, and there exists some connecting structure c, such that c connects a and b
IAO_0000119: http://www.ncbi.nlm.nih.gov/pubmed/22293552

attached to part of
type: ObjectProperty
sub property of: mereotopologically related to
sub property of: biomechanically related to
domain: anatomical structure
range: anatomical structure
property chain axiom: attached to
property chain axiom: part of
definition: a is attached to part of b if a is attached to b, or a is attached to some p, where p is part of b.
IAO_0000589: attached to part of (anatomical structure to anatomical structure)

Axiom
annotated source: attached to part of
annotated property: propertyChainAxiom
annotated target: attached to
annotated target: part of
RO_0002582: true

develops from
type: ObjectProperty
sub property of: has developmental contribution from
sub property of: developmentally preceded by
inverse of: develops into
type: TransitiveProperty
domain: BFO_0000004
range: BFO_0000004
IAO_0000114: IAO_0000125
definition: x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y
IAO_0000117: https://orcid.org/0000-0001-9114-8737
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000117: https://orcid.org/0000-0003-1980-3228
comment: This is the transitive form of the develops from relation

develops into
type: ObjectProperty
sub property of: developmentally succeeded by
sub property of: has potential to develop into
sub property of: has potential to directly develop into
type: TransitiveProperty
IAO_0000114: IAO_0000125
definition: inverse of develops from
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000117: https://orcid.org/0000-0002-7073-9172
IAO_0000117: https://orcid.org/0000-0003-1980-3228
in subset: RO_0002259

expressed in
type: ObjectProperty
sub property of: genomically related to
inverse of: expresses
domain: BFO_0000002
domain: Class
  union of: BFO_0000031
  union of: BFO_0000040
range: UBERON_0000465
property chain axiom: part of
IAO_0000112: 'neural crest cell' SubClassOf expresses some 'Wnt1 gene'
IAO_0000114: IAO_0000125
definition: x expressed in y if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and the transcription of x is part of the gene expression process (iii) x is a mature gene product such as a protein, and x was translated or otherwise processes from a transcript that was transcribed as part of this gene expression process
IAO_0000117: https://orcid.org/0000-0002-6601-2165

capable of
type: ObjectProperty
sub property of: capable of part of
domain: BFO_0000004
range: BFO_0000015
IAO_0000112: mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)
IAO_0000112: osteoclast SubClassOf 'capable of' some 'bone resorption'
definition: A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000118: has function realized in
IAO_0000119: http://www.ncbi.nlm.nih.gov/pubmed/20123131
IAO_0000119: http://www.ncbi.nlm.nih.gov/pubmed/21208450
IAO_0000232: For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)".
in subset: ro-eco

capable of part of
type: ObjectProperty
sub property of: functionally related to
sub property of: causal agent in process
property chain axiom: capable of
property chain axiom: part of
definition: c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000118: has function in

Axiom
annotated source: capable of part of
annotated property: propertyChainAxiom
annotated target: capable of
annotated target: part of
RO_0002582: true

temporally related to
type: ObjectProperty
domain: BFO_0000003
range: BFO_0000003
IAO_0000114: IAO_0000125
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000119: Allen's interval algebra
IAO_0000232: Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.
source: https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit
in subset: ro-eco
comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.

has input
type: ObjectProperty
sub property of: has participant
inverse of: input of
domain: BFO_0000015
IAO_0000114: IAO_0000125
definition: p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000118: consumes
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam
in subset: ro-eco

has developmental contribution from
type: ObjectProperty
sub property of: developmentally preceded by
inverse of: developmentally contributes to
domain: anatomical entity
range: anatomical entity
property chain axiom: has part
IAO_0000112: Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]
IAO_0000114: IAO_0000125
definition: x has developmental contribution from y iff x has some part z such that z develops from y
IAO_0000117: https://orcid.org/0000-0002-6601-2165

developmentally contributes to
type: ObjectProperty
sub property of: developmentally succeeded by
sub property of: has potential to developmentally contribute to
property chain axiom: develops into
property chain axiom: part of
IAO_0000114: IAO_0000125
definition: inverse of has developmental contribution from
IAO_0000117: https://orcid.org/0000-0002-6601-2165
in subset: RO_0002259

developmentally preceded by
type: ObjectProperty
sub property of: developmentally related to
inverse of: developmentally succeeded by
domain: BFO_0000002
range: BFO_0000002
IAO_0000114: IAO_0000125
definition: Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p
IAO_0000116: false
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000232: In general you should not use this relation to make assertions - use one of the more specific relations below this one
comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from

developmentally succeeded by
type: ObjectProperty
sub property of: has developmental potential involving
IAO_0000114: IAO_0000125
definition: Inverse of developmentally preceded by
IAO_0000117: https://orcid.org/0000-0002-6601-2165

expresses
type: ObjectProperty
sub property of: genomically related to
IAO_0000114: IAO_0000125
definition: y expresses x if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and x was transcribed from a gene as part of the gene expression process (iii) x is a mature gene product (protein or RNA), and x was translated or otherwise processed from a transcript that was transcribed as part of the gene expression process.
IAO_0000117: https://orcid.org/0000-0002-6601-2165

characteristic of part of
type: ObjectProperty
sub property of: depends on
property chain axiom: characteristic of
property chain axiom: part of
definition: q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.
IAO_0000116: Because part_of is transitive, inheres in is a sub-relation of characteristic of part of
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000118: inheres in part of
IAO_0000119: http://www.ncbi.nlm.nih.gov/pubmed/20064205
RO_0001900: RO_0001901

Axiom
annotated source: characteristic of part of
annotated property: propertyChainAxiom
annotated target: characteristic of
annotated target: part of
RO_0002582: true

mereotopologically related to
type: ObjectProperty
definition: A mereological relationship or a topological relationship
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships
RO_0001900: RO_0001901

developmentally related to
type: ObjectProperty
definition: A relationship that holds between entities participating in some developmental process (GO:0032502)
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development

functionally related to
type: ObjectProperty
definition: A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000232: This is a grouping relation that collects relations used for the purpose of connecting structure and function

part of structure that is capable of
type: ObjectProperty
sub property of: functionally related to
property chain axiom: part of
property chain axiom: capable of
definition: this relation holds between c and p when c is part of some c', and c' is capable of p.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000118: false

Axiom
annotated source: part of structure that is capable of
annotated property: propertyChainAxiom
annotated target: part of
annotated target: capable of
is a defining property chain axiom: true

genomically related to
type: ObjectProperty
domain: BFO_0000002
range: BFO_0000002
definition: holds between two entities when some genome-level process such as gene expression is involved. This includes transcriptional, spliceosomal events. These relations can be used between either macromolecule entities (such as regions of nucleic acid) or between their abstract informational counterparts.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving the genome of an organism

related via localization to
type: ObjectProperty
domain: BFO_0000015
range: BFO_0000002
definition: A relationship that holds via some process of localization
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000232: Do not use this relation directly. It is a grouping relation.

has target end location
type: ObjectProperty
sub property of: results in transport to from or in
property chain axiom: part of
definition: This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from a an initial location to some destination l.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
in subset: valid for go annotation extension
in subset: valid for go ontology
in subset: valid for gocam

results in transport to from or in
type: ObjectProperty
sub property of: related via localization to
IAO_0000112: 'mitochondrial transport' results_in_transport_to_from_or_in some mitochondrion (GO:0005739)
IAO_0000117: https://orcid.org/0000-0002-6601-2165

member of
type: ObjectProperty
sub property of: part of
inverse of: has member
IAO_0000112: An organism that is a member of a population of organisms
definition: is member of is a mereological relation between a item and a collection.
IAO_0000118: is member of
IAO_0000118: member part of
IAO_0000119: SIO
RO_0001900: RO_0001901

has member
type: ObjectProperty
sub property of: has part
type: IrreflexiveProperty
definition: has member is a mereological relation between a collection and an item.
IAO_0000119: SIO
RO_0001900: RO_0001901

input of
type: ObjectProperty
sub property of: participates in
sub property of: functionally related to
definition: inverse of has input
IAO_0000117: https://orcid.org/0000-0002-6601-2165
in subset: RO_0002259
in subset: ro-eco

attached to
type: ObjectProperty
sub property of: connected to
sub property of: attached to part of
type: SymmetricProperty
definition: a is attached to b if and only if a and b are discrete objects or object parts, and there are physical connections between a and b such that a force pulling a will move b, or a force pulling b will move a
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000589: attached to (anatomical structure to anatomical structure)
in subset: ro-eco

has developmental potential involving
type: ObjectProperty
sub property of: developmentally related to
domain: anatomical entity
range: anatomical entity
IAO_0000114: IAO_0000428
definition: x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).
IAO_0000117: https://orcid.org/0000-0002-6601-2165

has potential to developmentally contribute to
type: ObjectProperty
sub property of: has developmental potential involving
IAO_0000114: IAO_0000428
definition: x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y
IAO_0000117: https://orcid.org/0000-0002-6601-2165

has potential to develop into
type: ObjectProperty
sub property of: has developmental potential involving
IAO_0000114: IAO_0000428
definition: x has the potential to develop into y iff x develops into y or if x is capable of developing into y
IAO_0000117: https://orcid.org/0000-0002-6601-2165
comment: This relation has a stronger meaning than merely indicating that X may develop into Y, in that the capability of developing into Y is always present, even if X does not always actually develop into Y. In particular, this means that if Y is restricted to a given taxon T, X is necessarily likewise restricted.

has potential to directly develop into
type: ObjectProperty
sub property of: has potential to develop into
IAO_0000114: IAO_0000428
definition: x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y
IAO_0000117: https://orcid.org/0000-0002-6601-2165

causally related to
type: ObjectProperty
definition: relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.
IAO_0000116: This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. To define causal relations in an activity-flow type network, we make use of 3 primitives: * Temporal: how do the intervals of the two occurrents relate? * Is the causal relation regulatory? * Is the influence positive or negative? The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. Each of these 3 primitives can be composed to yie…
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

Axiom
annotated source: causally related to
annotated property: definition
annotated target: relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.
database_cross_reference: https://en.wikipedia.org/wiki/Causality

causally upstream of or within
type: ObjectProperty
sub property of: causal relation between processes
inverse of: causally downstream of or within
type: TransitiveProperty
property chain axiom: part of
definition: p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q.
IAO_0000116: We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000118: influences (processual)
has related synonym: affects

causally downstream of or within
type: ObjectProperty
sub property of: causal relation between processes
type: TransitiveProperty
definition: inverse of causally upstream of or within
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000119: causal-relations
in subset: RO_0002259

composed primarily of
type: ObjectProperty
sub property of: has part
domain: BFO_0000040
range: BFO_0000040
IAO_0000112: 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'
definition: x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000119: http://www.ncbi.nlm.nih.gov/pubmed/22293552
RO_0001900: RO_0001901
in subset: ro-eco

receives input from
type: ObjectProperty
sub property of: connected to
inverse of: sends output to
IAO_0000116: See notes for inverse relation
IAO_0000117: https://orcid.org/0000-0002-6601-2165

sends output to
type: ObjectProperty
sub property of: connected to
IAO_0000116: This is an exploratory relation. The label is taken from the FMA. It needs aligned with the neuron-specific relations such as has postsynaptic terminal in.
IAO_0000117: https://orcid.org/0000-0002-6601-2165

relation between physical entity and a process or stage
type: ObjectProperty
domain: BFO_0000004
range: BFO_0000003
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, typically connecting an anatomical entity to a biological process or developmental stage.

existence overlaps
type: ObjectProperty
sub property of: relation between physical entity and a process or stage
definition: x existence overlaps y if and only if either (a) the start of x is part of y or (b) the end of x is part of y. Formally: x existence starts and ends during y iff (α(x) >= α(y) & α(x) <= ω(y)) OR (ω(x) <= ω(y) & ω(x) >= α(y))
IAO_0000117: https://orcid.org/0000-0002-6601-2165
comment: The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.

causal agent in process
type: ObjectProperty
sub property of: causal relation between material entity and a process
inverse of: process has causal agent
definition: A relationship between a material entity and a process where the material entity has some causal role that influences the process
IAO_0000119: causal-relations

causal relation between processes
type: ObjectProperty
sub property of: causally related to
domain: BFO_0000003
range: BFO_0000003
definition: p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000119: causal-relations
IAO_0000232: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

depends on
type: ObjectProperty
IAO_0000117: https://orcid.org/0000-0002-6601-2165

biomechanically related to
type: ObjectProperty
sub property of: functionally related to
domain: anatomical structure
range: anatomical structure
definition: A relation that holds between elements of a musculoskeletal system or its analogs.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000232: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the biomechanical processes.

has part structure that is capable of
type: ObjectProperty
sub property of: functionally related to
sub property of: causal relation between material entity and a process
property chain axiom: has part
property chain axiom: capable of
IAO_0000112: gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'
definition: s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p
IAO_0000117: https://orcid.org/0000-0002-6601-2165

causal relation between material entity and a process
type: ObjectProperty
sub property of: causally related to
domain: BFO_0000040
range: BFO_0000015
definition: A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.
IAO_0000116: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000119: causal-relations

process has causal agent
type: ObjectProperty
sub property of: causally related to
definition: Inverse of 'causal agent in process'
IAO_0000119: causal-relations

generically depends on
type: ObjectProperty
inverse of: is carrier of
domain: BFO_0000031
range: BFO_0000004
property chain axiom: characteristic of
property chain axiom: is concretized as
IAO_0000112: Genetic information generically depend on molecules of DNA.
IAO_0000112: The novel *War and Peace* generically depends on this copy of the novel.
IAO_0000112: The pattern shared by chess boards generically depends on any chess board.
IAO_0000112: The score of a symphony g-depends on a copy of the score.
IAO_0000112: This pdf file generically depends on this server.
definition: A generically dependent continuant *b* generically depends on an independent continuant *c* at time *t* means: there inheres in *c* a specifically deendent continuant which concretizes *b* at *t*.
IAO_0000119: [072-ISO]
has exact synonym: g-depends on

is carrier of
type: ObjectProperty
domain: BFO_0000004
range: BFO_0000031
property chain axiom: concretizes
property chain axiom: has characteristic
IAO_0000112: Molecules of DNA are carriers of genetic information.
IAO_0000112: This copy of *War and Peace* is carrier of the novel written by Tolstoy.
IAO_0000112: This hard drive is carrier of these data items.
definition: *b* is carrier of *c* at time *t* if and only if *c* *g-depends on* *b* at *t*
IAO_0000119: [072-ISO]

has synaptic IO in region
type: ObjectProperty
sub property of: has synaptic terminal in
property chain axiom: part of
definition: A relationship between a neuron and a region, where the neuron has a functionally relevant number of input and/or output synapses in that region.
created by: https://orcid.org/0000-0002-1373-1705
creation date: 2020-07-17T09:26:52Z
has exact synonym: has synaptic input or output in

receives synaptic input in region
type: ObjectProperty
sub property of: has postsynaptic terminal in
sub property of: has synaptic IO in region
property chain axiom: part of
definition: A relationship between a neuron and a region, where the neuron has a functionally relevant number of input synapses in that region.
created by: https://orcid.org/0000-0002-1373-1705
creation date: 2020-07-17T09:42:23Z

receives synaptic input from neuron
type: ObjectProperty
sub property of: synapsed by
inverse of: sends synaptic output to cell
definition: A relationship between an anatomical structure (including cells) and a neuron that has a functionally relevant number of chemical synapses to it.
created by: https://orcid.org/0000-0002-1373-1705
creation date: 2021-05-26T08:40:18Z

sends synaptic output to cell
type: ObjectProperty
sub property of: synapsed to
definition: A relationship between a neuron and a cell that it has a functionally relevant number of chemical synapses to.
created by: https://orcid.org/0000-0002-1373-1705
creation date: 2021-05-26T08:41:07Z
comment: Not restricting range to 'cell' - object may be a muscle containing a cell targeted by the neuron.

device utilizes material
type: ObjectProperty
property chain axiom: capable of
property chain axiom: has input
IAO_0000112: A diagnostic testing device utilizes a specimen.
definition: X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y.
IAO_0000232: A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input.
IAO_0000232: See github ticket https://github.com/oborel/obo-relations/issues/497
contributor: https://orcid.org/0000-0001-9625-1899
contributor: https://orcid.org/0000-0003-2620-0345
creation date: 2021-11-08T12:00:00Z
has broad synonym: utilizes

is neuron
type: ObjectProperty
domain: CL_0000540
definition: This property only applies to neurons
contributor: https://orcid.org/0000-0001-6677-8489
date: 2024-10-23T14:34:52Z

is anatomical entity
type: ObjectProperty
domain: anatomical entity
definition: This property only applies to anatomical entities.
contributor: https://orcid.org/0000-0001-6677-8489
date: 2024-10-29T09:55:07Z

has assay method
type: ObjectProperty
sub property of: topObjectProperty
inverse of: is assay method of

is assay method of
type: ObjectProperty
sub property of: topObjectProperty

CL_0000540
type: Class
equivalent class: Restriction
  on property: is neuron
  has self: true

germ layer derivative
type: Class
equivalent class: Class
  intersection of: anatomical entity
  intersection of: Restriction
    on property: develops from
    some values from: germ layer
subclass of: anatomical entity
subclass of: Restriction
  on property: develops from
  some values from: germ layer
definition: Any anatomical entity (FBbt:10000000) that develops from some germ layer (FBbt:00000110).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000000
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: germ layer derivative
annotated property: definition
annotated target: Any anatomical entity (FBbt:10000000) that develops from some germ layer (FBbt:00000110).
database_cross_reference: FlyBase:FBrf0043441
database_cross_reference: FlyBase:FBrf0053832

organism
type: Class
subclass of: multicellular structure
definition: An individual member of the species Drosophila melanogaster.
database_cross_reference: CARO:0000012
database_cross_reference: NCBITaxon:7227
database_cross_reference: UBERON:0000468
has OBO namespace: fly_anatomy.ontology
has related synonym: Drosophila
has related synonym: whole organism
id: FBbt:00000001
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: organism
annotated property: definition
annotated target: An individual member of the species Drosophila melanogaster.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

tagma
type: Class
subclass of: anterior-posterior subdivision of organism
subclass of: Restriction
  on property: part of
  some values from: organism
definition: One of the three main divisions of the whole organism formed from groups of segments.
database_cross_reference: UBERON:6000002
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000002
in subset: FB gloss
in subset: cur
in subset: larval OF

Axiom
annotated source: tagma
annotated property: definition
annotated target: One of the three main divisions of the whole organism formed from groups of segments.
database_cross_reference: FBC:GG

segment
type: Class
subclass of: anterior-posterior subdivision of organism
definition: One of the repeated divisions of the whole organism.
database_cross_reference: UBERON:0000914
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000003
in subset: FB gloss
in subset: cur
in subset: larval OF

Axiom
annotated source: segment
annotated property: definition
annotated target: One of the repeated divisions of the whole organism.
database_cross_reference: FBC:GG

head
type: Class
subclass of: tagma
definition: Anterior part of the organism, including mouthparts, some sensory structures and the brain.
database_cross_reference: UBERON:6000004
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000004
in subset: cur
in subset: larval OF

Axiom
annotated source: head
annotated property: definition
annotated target: Anterior part of the organism, including mouthparts, some sensory structures and the brain.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

head segment
type: Class
equivalent class: Class
  intersection of: segment
  intersection of: Restriction
    on property: part of
    some values from: head
subclass of: segment
subclass of: Restriction
  on property: part of
  some values from: head
definition: Any segment (FBbt:00000003) that is part of some head (FBbt:00000004).
database_cross_reference: UBERON:6000006
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000006
in subset: cur
in subset: larval OF

Axiom
annotated source: head segment
annotated property: definition
annotated target: Any segment (FBbt:00000003) that is part of some head (FBbt:00000004).
database_cross_reference: FlyBase:FBrf0075072

gnathal segment
type: Class
subclass of: head segment
definition: The head segments that develop posterior to the embryonic/larval mouth.
database_cross_reference: UBERON:6000011
has OBO namespace: fly_anatomy.ontology
has related synonym: postoral segment
id: FBbt:00000011
in subset: FB gloss
in subset: cur

Axiom
annotated source: gnathal segment
annotated property: definition
annotated target: The head segments that develop posterior to the embryonic/larval mouth.
database_cross_reference: FBC:GG

thorax
type: Class
subclass of: tagma
definition: The main middle section of the insect body comprising three thoracic rings: the pro-, the meso- and the metathoraces which are more or less well fused and cask-like sometimes having on the upper lateral part one of two pairs of wings, while on the ventrolateral part each thoracic ring bears a pair of legs.
database_cross_reference: UBERON:6000015
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000015
in subset: FB gloss
in subset: cur

Axiom
annotated source: thorax
annotated property: definition
annotated target: The main middle section of the insect body comprising three thoracic rings: the pro-, the meso- and the metathoraces which are more or less well fused and cask-like sometimes having on the upper lateral part one of two pairs of wings, while on the ventrolateral part each thoracic ring bears a pair of legs.
database_cross_reference: FlyBase:FBrf0166419

thoracic segment
type: Class
equivalent class: Class
  intersection of: segment
  intersection of: Restriction
    on property: part of
    some values from: thorax
subclass of: segment
subclass of: Restriction
  on property: part of
  some values from: thorax
definition: Any segment (FBbt:00000003) that is part of some thorax (FBbt:00000015).
database_cross_reference: UBERON:6000016
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000016
in subset: cur

Axiom
annotated source: thoracic segment
annotated property: definition
annotated target: Any segment (FBbt:00000003) that is part of some thorax (FBbt:00000015).
database_cross_reference: FBC:Autogenerated

prothoracic segment
type: Class
subclass of: thoracic segment
definition: The first (most anterior) segment of the thorax.
database_cross_reference: UBERON:6000017
has OBO namespace: fly_anatomy.ontology
has related synonym: prothorax
has related synonym: t1
has related synonym: thoracic segment 1
id: FBbt:00000017
in subset: cur

Axiom
annotated source: prothoracic segment
annotated property: definition
annotated target: The first (most anterior) segment of the thorax.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

mesothoracic segment
type: Class
subclass of: thoracic segment
definition: The second (middle) segment of the thorax.
database_cross_reference: UBERON:6000018
has OBO namespace: fly_anatomy.ontology
has related synonym: mesothorax
has related synonym: t2
has related synonym: thoracic segment 2
id: FBbt:00000018
in subset: FB gloss
in subset: cur

Axiom
annotated source: mesothoracic segment
annotated property: definition
annotated target: The second (middle) segment of the thorax.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

abdomen
type: Class
subclass of: tagma
definition: The most posterior of the three tagma (FBbt:00000002).
database_cross_reference: UBERON:6000020
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000020
in subset: FB gloss
in subset: cur

Axiom
annotated source: abdomen
annotated property: definition
annotated target: The most posterior of the three tagma (FBbt:00000002).
database_cross_reference: FlyBase:FBrf0166419

abdominal segment
type: Class
equivalent class: Class
  intersection of: segment
  intersection of: Restriction
    on property: part of
    some values from: abdomen
subclass of: segment
subclass of: Restriction
  on property: part of
  some values from: abdomen
definition: Metameric subdivision of the abdomen.
database_cross_reference: UBERON:6000021
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000021
in subset: cur

Axiom
annotated source: abdominal segment
annotated property: definition
annotated target: Metameric subdivision of the abdomen.
database_cross_reference: FBC:SPR

abdominal segment 6
type: Class
subclass of: anterior abdominal segment
definition: Sixth most anterior segment of the abdomen.
has OBO namespace: fly_anatomy.ontology
has related synonym: a6
id: FBbt:00000027
in subset: cur

Axiom
annotated source: abdominal segment 6
annotated property: definition
annotated target: Sixth most anterior segment of the abdomen.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

abdominal segment 11
type: Class
subclass of: terminal segment
subclass of: Restriction
  on property: part of
  some values from: telson
definition: Eleventh most anterior segment of the abdomen.
has OBO namespace: fly_anatomy.ontology
has related synonym: a11
id: FBbt:00000032
in subset: cur

Axiom
annotated source: abdominal segment 11
annotated property: definition
annotated target: Eleventh most anterior segment of the abdomen.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

telson
type: Class
subclass of: anterior-posterior subdivision of organism
subclass of: Restriction
  on property: part of
  some values from: abdomen
definition: Dorsal portion of the eighth segment and all structures posterior to it (Pignoni et al., 1992).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000033
in subset: cur

Axiom
annotated source: telson
annotated property: definition
annotated target: Dorsal portion of the eighth segment and all structures posterior to it (Pignoni et al., 1992).
database_cross_reference: FlyBase:FBrf0055857

embryo
type: Class
subclass of: organism
definition: An organism that is undergoing embryogenesis (Campos-Ortega and Hartenstein, 1997). Embryogenesis begins with a fertilized egg, and finishes with hatching at the end of embryonic stage 17 (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FBdv:00005289
database_cross_reference: UBERON:0000922
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000052
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryo
annotated property: definition
annotated target: An organism that is undergoing embryogenesis (Campos-Ortega and Hartenstein, 1997). Embryogenesis begins with a fertilized egg, and finishes with hatching at the end of embryonic stage 17 (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0039741
database_cross_reference: FlyBase:FBrf0089570

cleavage stage embryo
type: Class
subclass of: embryo
definition: Embryo that is in the cleavage stage, which encompasses the first 13 rapid divisions after fertilization, corresponding to embryonic stages 1-4, prior to cellularization (Hartenstein, 1993; Campos-Ortega and Hartenstein, 1997). The first seven divisions are synchronous (Campos-Ortega and Hartenstein, 1997). During the course of the subsequent three divisions, most of the nuclei approach the surface, to form the syncitial blastoderm (Campos-Ortega and Hartenstein, 1997). They then divide asynchronously a further three times, bringing the total number of cells to around 5000 (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FBdv:00000054
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000054

Axiom
annotated source: cleavage stage embryo
annotated property: definition
annotated target: Embryo that is in the cleavage stage, which encompasses the first 13 rapid divisions after fertilization, corresponding to embryonic stages 1-4, prior to cellularization (Hartenstein, 1993; Campos-Ortega and Hartenstein, 1997). The first seven divisions are synchronous (Campos-Ortega and Hartenstein, 1997). During the course of the subsequent three divisions, most of the nuclei approach the surface, to form the syncitial blastoderm (Campos-Ortega and Hartenstein, 1997). They then divide asynchronously a further three times, bringing the total number of cells to around 5000 (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0064803
database_cross_reference: FlyBase:FBrf0089570

germ band
type: Class
subclass of: developing embryonic structure
definition: Embryonic collection of cells that will give rise to the metameric regions of the embryo, comprising precursors of the gnathal, thoracic and abdominal segments (Campos-Ortega and Hartenstein, 1997).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000102
in subset: FB gloss
in subset: cur

Axiom
annotated source: germ band
annotated property: definition
annotated target: Embryonic collection of cells that will give rise to the metameric regions of the embryo, comprising precursors of the gnathal, thoracic and abdominal segments (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570

mesoderm anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: Restriction
  on property: develops into
  some values from: mesoderm
definition: Contiguous region of early embryonic cells that will invaginate to form the mesoderm during gastrulation (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: UBERON:6000104
has OBO namespace: fly_anatomy.ontology
has related synonym: ventral plate
id: FBbt:00000104
in subset: cur

Axiom
annotated source: mesoderm anlage
annotated property: definition
annotated target: Contiguous region of early embryonic cells that will invaginate to form the mesoderm during gastrulation (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0155831

germ layer
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: portion of tissue
subclass of: Restriction
  on property: develops into
  some values from: germ layer derivative
definition: Complex primordium that is formed during gastrulation (stage 6-7), when anlagen invaginate from the monolayer of the cellular blastoderm (Campos-Ortega and Hartenstein, 1997; Hartenstein, 2004). The invaginated anlagen become organized into the middle two layers of a three-layered tube structure (Campos-Ortega and Hartenstein, 1997). These three layers correspond to the three germ layers of the endoderm, mesoderm and ectoderm (from inner to outer, respectively), with each layer having distinct cell division patterns and cell fates (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: UBERON:0000923
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000110
in subset: EmbDevSlim
in subset: FB gloss
in subset: cur

Axiom
annotated source: germ layer
annotated property: definition
annotated target: Complex primordium that is formed during gastrulation (stage 6-7), when anlagen invaginate from the monolayer of the cellular blastoderm (Campos-Ortega and Hartenstein, 1997; Hartenstein, 2004). The invaginated anlagen become organized into the middle two layers of a three-layered tube structure (Campos-Ortega and Hartenstein, 1997). These three layers correspond to the three germ layers of the endoderm, mesoderm and ectoderm (from inner to outer, respectively), with each layer having distinct cell division patterns and cell fates (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0155831
database_cross_reference: FlyBase:FBrf0178740

ectoderm
type: Class
subclass of: germ layer
subclass of: Restriction
  on property: develops from
  some values from: ectoderm anlage
subclass of: Restriction
  on property: develops into
  some values from: ectodermal derivative
definition: Outermost germ layer of the embryo (Campos-Ortega and Hartenstein, 1997). It is formed from the ectoderm anlage, which includes the cells of the cellular blastoderm monolayer that do not invaginate during gastrulation (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: UBERON:0000924
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000111
in subset: EmbDevSlim
in subset: FB gloss
in subset: cur

Axiom
annotated source: ectoderm
annotated property: definition
annotated target: Outermost germ layer of the embryo (Campos-Ortega and Hartenstein, 1997). It is formed from the ectoderm anlage, which includes the cells of the cellular blastoderm monolayer that do not invaginate during gastrulation (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0155831
database_cross_reference: FlyBase:FBrf0244630

dorsal ectoderm
type: Class
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: trunk ectoderm
subclass of: Restriction
  on property: develops from
  some values from: dorsal ectoderm anlage
definition: Dorsal region of the ectoderm. It forms parts of the larval epidermis and the tracheal system, with other parts of these contributed to by the lateral ectoderm (Stathopoulos and Newcomb, 2020).
database_cross_reference: UBERON:6000112
has OBO namespace: fly_anatomy.ontology
has related synonym: AdorEc
has related synonym: dorEc
id: FBbt:00000112
in subset: cur

Axiom
annotated source: dorsal ectoderm
annotated property: definition
annotated target: Dorsal region of the ectoderm. It forms parts of the larval epidermis and the tracheal system, with other parts of these contributed to by the lateral ectoderm (Stathopoulos and Newcomb, 2020).
database_cross_reference: FlyBase:FBrf0244630

anterior ectoderm
type: Class
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: ectoderm
subclass of: Restriction
  on property: develops from
  some values from: anterior ectoderm anlage
definition: The region of the ectoderm anterior to the cephalic furrow.
database_cross_reference: UBERON:6000119
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000119
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: anterior ectoderm
annotated property: definition
annotated target: The region of the ectoderm anterior to the cephalic furrow.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

posterior ectoderm
type: Class
subclass of: developing embryonic structure
subclass of: Restriction
  on property: part of
  some values from: trunk ectoderm
subclass of: Restriction
  on property: develops from
  some values from: posterior ectoderm anlage
subclass of: Restriction
  on property: develops into
  some values from: hindgut
definition: Region of the ectoderm found posterior to the dorsal, lateral and ventral regions of the ectoderm and anterior to the posterior endoderm (Stathopoulos and Newcomb, 2020). It forms the hindgut (Stathopoulos and Newcomb, 2020).
has exact synonym: proctodeal ring
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000122
in subset: cur

Axiom
annotated source: posterior ectoderm
annotated property: definition
annotated target: Region of the ectoderm found posterior to the dorsal, lateral and ventral regions of the ectoderm and anterior to the posterior endoderm (Stathopoulos and Newcomb, 2020). It forms the hindgut (Stathopoulos and Newcomb, 2020).
database_cross_reference: FlyBase:FBrf0244630

Axiom
annotated source: posterior ectoderm
annotated property: hasExactSynonym
annotated target: proctodeal ring
database_cross_reference: FlyBase:FBrf0244630

amnioproctodeal invagination
type: Class
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: gastrula embryo
definition: The posterior invagination of ectoderm that gives rise to part of the digestive system.
database_cross_reference: UBERON:0000931
has OBO namespace: fly_anatomy.ontology
has related synonym: posterior midgut invagination
id: FBbt:00000123
in subset: FB gloss
in subset: cur

Axiom
annotated source: amnioproctodeal invagination
annotated property: definition
annotated target: The posterior invagination of ectoderm that gives rise to part of the digestive system.
database_cross_reference: FBC:GG

epithelial cell
type: Class
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: epithelium
definition: Cell that has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity.
database_cross_reference: CARO:0000077
database_cross_reference: CL:0000066
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000124
in subset: cur
in subset: scrnaseq slim

Axiom
annotated source: epithelial cell
annotated property: definition
annotated target: Cell that has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity.
database_cross_reference: https://orcid.org/0000-0001-9114-8737

endoderm
type: Class
subclass of: germ layer
subclass of: Restriction
  on property: develops from
  some values from: endoderm anlage
subclass of: Restriction
  on property: develops into
  some values from: endodermal derivative
definition: Innermost germ layer of the embryo (Campos-Ortega and Hartenstein, 1997). It is formed by the invagination of two anlagen, those of the anterior and posterior midgut (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: UBERON:0000925
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000125
in subset: FB gloss
in subset: cur

Axiom
annotated source: endoderm
annotated property: definition
annotated target: Innermost germ layer of the embryo (Campos-Ortega and Hartenstein, 1997). It is formed by the invagination of two anlagen, those of the anterior and posterior midgut (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0155831

mesoderm
type: Class
subclass of: germ layer
subclass of: Restriction
  on property: develops from
  some values from: mesoderm anlage
subclass of: Restriction
  on property: develops into
  some values from: mesodermal derivative
definition: Middle germ layer of the embryo (between ectoderm and endoderm) following gastrulation (Campos-Ortega and Hartenstein, 1997). Shortly after its formation, its cells undergo mitosis and it loses its regular epithelial architecture (Campos-Ortega and Hartenstein, 1997). In stage 9 it reorganizes into a regular monolayer of cuboidal cells that lines the ectoderm (Campos-Ortega and Hartenstein, 1997). At the end of stage 10 further cell divisions disrupt this structure and its cells reform into two layers in stage 11 (Campos-Ortega and Hartenstein, 1997). It finally splits up into separate cell masses in late stage 11 (Campos-Ortega and Hartenstein, 1997). Its derivatives include the muscles, heart and fat body (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: UBERON:0000926
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000126
in subset: FB gloss
in subset: cur

Axiom
annotated source: mesoderm
annotated property: definition
annotated target: Middle germ layer of the embryo (between ectoderm and endoderm) following gastrulation (Campos-Ortega and Hartenstein, 1997). Shortly after its formation, its cells undergo mitosis and it loses its regular epithelial architecture (Campos-Ortega and Hartenstein, 1997). In stage 9 it reorganizes into a regular monolayer of cuboidal cells that lines the ectoderm (Campos-Ortega and Hartenstein, 1997). At the end of stage 10 further cell divisions disrupt this structure and its cells reform into two layers in stage 11 (Campos-Ortega and Hartenstein, 1997). It finally splits up into separate cell masses in late stage 11 (Campos-Ortega and Hartenstein, 1997). Its derivatives include the muscles, heart and fat body (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0155831

trunk mesoderm
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: Restriction
  on property: part of
  some values from: germ band
subclass of: Restriction
  on property: part of
  some values from: mesoderm
subclass of: Restriction
  on property: develops from
  some values from: trunk mesoderm anlage
subclass of: Restriction
  on property: develops into
  some values from: trunk mesoderm derivative
definition: Region of mesoderm of that forms a layer interior to the ectoderm of the germ band (Campos-Ortega and Hartenstein, 1997). Following its invagination during ventral furrow formation in stages 6 and 7, it remains a coherent structure with no morphologically apparent subdivisions, apart from transient metamery during stage 9, until stage 11 (Campos-Ortega and Hartenstein, 1997). Its cells divide following invagination and it loses its epithelial integrity, forming a monolayer of cuboidal cells by stage 9 (Campos-Ortega and Hartenstein, 1997). A further division happens during stage 10 leading to two distinct layers by stage 11 (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: UBERON:6000128
has exact synonym: mesoderm of the germ layer
has OBO namespace: fly_anatomy.ontology
has related synonym: AtrunkMes
has related synonym: P2 TrMes
has related synonym: TrMes
id: FBbt:00000128
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: trunk mesoderm
annotated property: definition
annotated target: Region of mesoderm of that forms a layer interior to the ectoderm of the germ band (Campos-Ortega and Hartenstein, 1997). Following its invagination during ventral furrow formation in stages 6 and 7, it remains a coherent structure with no morphologically apparent subdivisions, apart from transient metamery during stage 9, until stage 11 (Campos-Ortega and Hartenstein, 1997). Its cells divide following invagination and it loses its epithelial integrity, forming a monolayer of cuboidal cells by stage 9 (Campos-Ortega and Hartenstein, 1997). A further division happens during stage 10 leading to two distinct layers by stage 11 (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570

Axiom
annotated source: trunk mesoderm
annotated property: hasExactSynonym
annotated target: mesoderm of the germ layer
database_cross_reference: FlyBase:FBrf0089570

Axiom
annotated source: trunk mesoderm
annotated property: hasRelatedSynonym
annotated target: P2 TrMes
database_cross_reference: https://orcid.org/0000-0002-7073-9172

somatic trunk mesoderm
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: Restriction
  on property: part of
  some values from: trunk mesoderm
definition: Outer layer of the trunk mesoderm that arises due to mitosis at the end of stage 10 (Campos-Ortega and Hartenstein, 1997). It will give rise to the segmentally-repeated body wall muscles and the fat body (Campos-Ortega and Hartenstein, 1997).
has OBO namespace: fly_anatomy.ontology
has related synonym: somatopleura
id: FBbt:00000129
in subset: cur

Axiom
annotated source: somatic trunk mesoderm
annotated property: definition
annotated target: Outer layer of the trunk mesoderm that arises due to mitosis at the end of stage 10 (Campos-Ortega and Hartenstein, 1997). It will give rise to the segmentally-repeated body wall muscles and the fat body (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570

Axiom
annotated source: somatic trunk mesoderm
annotated property: hasRelatedSynonym
annotated target: somatopleura
database_cross_reference: FlyBase:FBrf0089570

visceral trunk mesoderm
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: Restriction
  on property: part of
  some values from: trunk mesoderm
definition: Inner layer of the trunk mesoderm that arises due to mitosis at the end of stage 10 (Campos-Ortega and Hartenstein, 1997). It will give rise to the visceral musculature of the trunk (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: UBERON:6000130
has OBO namespace: fly_anatomy.ontology
has related synonym: splanchnopleura
id: FBbt:00000130
in subset: cur

Axiom
annotated source: visceral trunk mesoderm
annotated property: definition
annotated target: Inner layer of the trunk mesoderm that arises due to mitosis at the end of stage 10 (Campos-Ortega and Hartenstein, 1997). It will give rise to the visceral musculature of the trunk (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570

Axiom
annotated source: visceral trunk mesoderm
annotated property: hasRelatedSynonym
annotated target: splanchnopleura
database_cross_reference: FlyBase:FBrf0089570

embryonic tagma
type: Class
equivalent class: Class
  intersection of: tagma
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: tagma
subclass of: Restriction
  on property: part of
  some values from: embryo
definition: Any tagma of the embryo.
database_cross_reference: UBERON:6000137
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000137
in subset: cur

Axiom
annotated source: embryonic tagma
annotated property: definition
annotated target: Any tagma of the embryo.
database_cross_reference: FBC:Autogenerated

embryonic segment
type: Class
equivalent class: Class
  intersection of: segment
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: segment
subclass of: Restriction
  on property: part of
  some values from: embryo
definition: Any segment of the embryo.
database_cross_reference: UBERON:6000154
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000154
in subset: cur

Axiom
annotated source: embryonic segment
annotated property: definition
annotated target: Any segment of the embryo.
database_cross_reference: FBC:Autogenerated

embryonic head
type: Class
equivalent class: Class
  intersection of: head
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: head
subclass of: embryonic tagma
definition: Any head of the embryo.
database_cross_reference: UBERON:0008816
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000155
in subset: cur
in subset: larval OF

Axiom
annotated source: embryonic head
annotated property: definition
annotated target: Any head of the embryo.
database_cross_reference: FBC:Autogenerated

embryonic head segment
type: Class
equivalent class: Class
  intersection of: head segment
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: head segment
subclass of: embryonic segment
subclass of: Restriction
  on property: part of
  some values from: embryonic head
definition: Any head segment of the embryo.
database_cross_reference: UBERON:6000157
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000157
in subset: cur

Axiom
annotated source: embryonic head segment
annotated property: definition
annotated target: Any head segment of the embryo.
database_cross_reference: FlyBase:FBrf0075072

embryonic gnathal segment
type: Class
equivalent class: Class
  intersection of: gnathal segment
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: gnathal segment
subclass of: embryonic head segment
definition: Any gnathal segment of the embryo.
database_cross_reference: UBERON:6000162
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000162
in subset: cur

Axiom
annotated source: embryonic gnathal segment
annotated property: definition
annotated target: Any gnathal segment of the embryo.
database_cross_reference: FBC:Autogenerated

embryonic thorax
type: Class
equivalent class: Class
  intersection of: thorax
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: thorax
subclass of: embryonic tagma
definition: Any thorax of the embryo.
database_cross_reference: UBERON:6000166
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000166
in subset: cur

Axiom
annotated source: embryonic thorax
annotated property: definition
annotated target: Any thorax of the embryo.
database_cross_reference: FBC:Autogenerated

embryonic thoracic segment
type: Class
equivalent class: Class
  intersection of: thoracic segment
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: thoracic segment
subclass of: embryonic segment
subclass of: Restriction
  on property: part of
  some values from: embryonic thorax
definition: Any thoracic segment of the embryo.
database_cross_reference: UBERON:6000167
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000167
in subset: cur

Axiom
annotated source: embryonic thoracic segment
annotated property: definition
annotated target: Any thoracic segment of the embryo.
database_cross_reference: FBC:Autogenerated

embryonic prothoracic segment
type: Class
equivalent class: Class
  intersection of: prothoracic segment
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: prothoracic segment
subclass of: embryonic thoracic segment
definition: Prothoracic segment of the embryo.
database_cross_reference: UBERON:6000168
has OBO namespace: fly_anatomy.ontology
has related synonym: prothorax
has related synonym: t1
has related synonym: thoracic segment 1
id: FBbt:00000168
in subset: cur

Axiom
annotated source: embryonic prothoracic segment
annotated property: definition
annotated target: Prothoracic segment of the embryo.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

embryonic mesothoracic segment
type: Class
equivalent class: Class
  intersection of: mesothoracic segment
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: mesothoracic segment
subclass of: embryonic thoracic segment
definition: Mesothoracic segment of the embryo.
database_cross_reference: UBERON:6000169
has OBO namespace: fly_anatomy.ontology
has related synonym: mesothorax
has related synonym: t2
has related synonym: thoracic segment 2
id: FBbt:00000169
in subset: cur

Axiom
annotated source: embryonic mesothoracic segment
annotated property: definition
annotated target: Mesothoracic segment of the embryo.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

embryonic abdomen
type: Class
equivalent class: Class
  intersection of: abdomen
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: abdomen
subclass of: embryonic tagma
definition: Abdomen of the embryo.
database_cross_reference: UBERON:6000171
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000171
in subset: cur

Axiom
annotated source: embryonic abdomen
annotated property: definition
annotated target: Abdomen of the embryo.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

embryonic abdominal segment
type: Class
equivalent class: Class
  intersection of: abdominal segment
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: abdominal segment
subclass of: embryonic segment
subclass of: Restriction
  on property: part of
  some values from: embryonic abdomen
definition: Metameric subdivision of the embryonic abdomen.
database_cross_reference: UBERON:6000172
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000172
in subset: cur

Axiom
annotated source: embryonic abdominal segment
annotated property: definition
annotated target: Metameric subdivision of the embryonic abdomen.
database_cross_reference: FBC:SPR

embryonic abdominal segment 6
type: Class
equivalent class: Class
  intersection of: abdominal segment 6
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: abdominal segment 6
subclass of: embryonic anterior abdominal segment
definition: Any abdominal segment 6 of the embryo.
has OBO namespace: fly_anatomy.ontology
has related synonym: a6
id: FBbt:00000178
in subset: cur

Axiom
annotated source: embryonic abdominal segment 6
annotated property: definition
annotated target: Any abdominal segment 6 of the embryo.
database_cross_reference: FBC:Autogenerated

embryonic abdominal segment 11
type: Class
equivalent class: Class
  intersection of: abdominal segment 11
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: abdominal segment 11
subclass of: embryonic terminal segment
subclass of: Restriction
  on property: part of
  some values from: embryonic telson
definition: Any abdominal segment 11 of the embryo.
has OBO namespace: fly_anatomy.ontology
has related synonym: a11
id: FBbt:00000183
in subset: cur

Axiom
annotated source: embryonic abdominal segment 11
annotated property: definition
annotated target: Any abdominal segment 11 of the embryo.
database_cross_reference: FBC:Autogenerated

embryonic telson
type: Class
equivalent class: Class
  intersection of: telson
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: telson
subclass of: Restriction
  on property: part of
  some values from: embryonic abdomen
definition: Any telson of the embryo.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000184
in subset: cur

Axiom
annotated source: embryonic telson
annotated property: definition
annotated target: Any telson of the embryo.
database_cross_reference: FBC:Autogenerated

larval tracheal system
type: Class
equivalent class: Class
  intersection of: tracheal system
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: tracheal system
subclass of: Restriction
  on property: part of
  some values from: larva
subclass of: Restriction
  on property: develops from
  some values from: presumptive embryonic/larval tracheal system
definition: Tracheal system of the late embryo or larva. The three larval instars retain the same basic pattern of the tracheal system, but with increasing complexity of branch trachea. It is composed of ten tracheal metameres.
has alternative id: FBbt:00005570
has exact synonym: embryonic/larval tracheal system
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000185
in subset: cur

Axiom
annotated source: larval tracheal system
annotated property: definition
annotated target: Tracheal system of the late embryo or larva. The three larval instars retain the same basic pattern of the tracheal system, but with increasing complexity of branch trachea. It is composed of ten tracheal metameres.
database_cross_reference: FlyBase:FBrf0034081

presumptive embryonic/larval digestive system
type: Class
subclass of: presumptive embryonic/larval system
definition: The sum of all the structures in the embryo that will develop into the embryonic/larval digestive system.
has OBO namespace: fly_anatomy.ontology
has related synonym: embryonic digestive system
id: FBbt:00000438
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: presumptive embryonic/larval digestive system
annotated property: definition
annotated target: The sum of all the structures in the embryo that will develop into the embryonic/larval digestive system.
database_cross_reference: FlyBase:FBrf0007733
database_cross_reference: FlyBase:FBrf0064792
database_cross_reference: FlyBase:FBrf0076136

Axiom
annotated source: presumptive embryonic/larval digestive system
annotated property: hasRelatedSynonym
annotated target: embryonic digestive system
database_cross_reference: https://orcid.org/0000-0002-7073-9172

hindgut proper primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: posterior ectoderm derivative
subclass of: Class
  intersection of: Restriction
    on property: develops into
    some values from: small intestine primordium
  intersection of: Restriction
    on property: develops into
    some values from: large intestine primordium
  intersection of: Restriction
    on property: develops into
    some values from: rectum primordium
  intersection of: Restriction
    on property: develops into
    some values from: embryonic primordium of adult hindgut precursor
subclass of: Restriction
  on property: part of
  some values from: early extended germ band embryo
subclass of: Restriction
  on property: develops from
  some values from: inclusive hindgut primordium
definition: A(n) primordium that develops into some rectum primordium and some large intestine primordium and some small intestine primordium and some embryonic primordium of adult hindgut precursor. It develops from some inclusive hindgut primordium.
has OBO namespace: fly_anatomy.ontology
has related synonym: P2 pHiGP
has related synonym: pHiGP2
id: FBbt:00000441
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: hindgut proper primordium
annotated property: definition
annotated target: A(n) primordium that develops into some rectum primordium and some large intestine primordium and some small intestine primordium and some embryonic primordium of adult hindgut precursor. It develops from some inclusive hindgut primordium.
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: hindgut proper primordium
annotated property: hasRelatedSynonym
annotated target: P2 pHiGP
database_cross_reference: https://orcid.org/0000-0002-7073-9172

Malpighian tubule primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: posterior ectoderm derivative
subclass of: Class
  intersection of: Restriction
    on property: develops into
    some values from: Malpighian tubule main body primordium
  intersection of: Restriction
    on property: develops into
    some values from: Malpighian tubule tip cell primordium
subclass of: Restriction
  on property: part of
  some values from: early extended germ band embryo
subclass of: Restriction
  on property: develops from
  some values from: inclusive hindgut primordium
definition: A(n) primordium that develops into some Malpighian tubule tip cell primordium and some Malpighian tubule main body primordium. It develops from some inclusive hindgut primordium.
has OBO namespace: fly_anatomy.ontology
has related synonym: MTP2
has related synonym: P2 MalT
id: FBbt:00000442
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: Malpighian tubule primordium
annotated property: definition
annotated target: A(n) primordium that develops into some Malpighian tubule tip cell primordium and some Malpighian tubule main body primordium. It develops from some inclusive hindgut primordium.
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: Malpighian tubule primordium
annotated property: hasRelatedSynonym
annotated target: P2 MalT
database_cross_reference: https://orcid.org/0000-0002-7073-9172

embryonic primordium of adult salivary gland
type: Class
subclass of: embryonic imaginal tissue
subclass of: primordium
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: adult salivary gland anlage
subclass of: Restriction
  on property: develops into
  some values from: salivary gland imaginal ring
definition: Primordium of the dorsal closure embryo that give rise to the salivary gland imaginal ring which in turn develops into the adult salivary gland.
has exact synonym: adult salivary gland primordium
has OBO namespace: fly_anatomy.ontology
has related synonym: salivary gland placode
id: FBbt:00000443
in subset: cur

Axiom
annotated source: embryonic primordium of adult salivary gland
annotated property: definition
annotated target: Primordium of the dorsal closure embryo that give rise to the salivary gland imaginal ring which in turn develops into the adult salivary gland.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

posterior endoderm anlage
type: Class
subclass of: endoderm anlage
subclass of: Restriction
  on property: develops into
  some values from: posterior endoderm
definition: Region of cells of the early embryo that will invaginate from the posterior dorsal embryo during gastrulation to form the posterior part of the endoderm (Campos-Ortega and Hartenstein, 1997). It is a precursor to the posterior midgut (Campos-Ortega and Hartenstein, 1997).
has exact synonym: posterior midgut anlage
has OBO namespace: fly_anatomy.ontology
has related synonym: Asn/A postEndo
id: FBbt:00000447
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: posterior endoderm anlage
annotated property: definition
annotated target: Region of cells of the early embryo that will invaginate from the posterior dorsal embryo during gastrulation to form the posterior part of the endoderm (Campos-Ortega and Hartenstein, 1997). It is a precursor to the posterior midgut (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570

Axiom
annotated source: posterior endoderm anlage
annotated property: hasExactSynonym
annotated target: posterior midgut anlage
database_cross_reference: FlyBase:FBrf0089570

Axiom
annotated source: posterior endoderm anlage
annotated property: hasRelatedSynonym
annotated target: Asn/A postEndo
database_cross_reference: https://orcid.org/0000-0002-7073-9172

larval muscle system
type: Class
equivalent class: Class
  intersection of: muscle system
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: muscle system
subclass of: Restriction
  on property: part of
  some values from: larva
subclass of: Restriction
  on property: develops from
  some values from: presumptive embryonic/larval muscle system
definition: Muscle system of the larva.
has alternative id: FBbt:00005648
has exact synonym: embryonic/larval muscle system
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000462
in subset: cur

Axiom
annotated source: larval muscle system
annotated property: definition
annotated target: Muscle system of the larva.
database_cross_reference: FlyBase:FBrf0031016
database_cross_reference: FlyBase:FBrf0041814
database_cross_reference: FlyBase:FBrf0044229
database_cross_reference: FlyBase:FBrf0064793

larval somatic muscle cell
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: larval somatic muscle
subclass of: somatic muscle cell
subclass of: larval muscle cell
subclass of: Restriction
  on property: part of
  some values from: larval somatic muscle
subclass of: Restriction
  on property: develops from
  some values from: embryonic somatic muscle cell
definition: Any muscle cell (FBbt:00005074) that is part of some larval somatic muscle (FBbt:00058297).
has alternative id: FBbt:00005650
has exact synonym: embryonic/larval skeletal muscle cell
has exact synonym: embryonic/larval somatic muscle cell
has exact synonym: larval skeletal muscle cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00000464
in subset: cur

Axiom
annotated source: larval somatic muscle cell
annotated property: definition
annotated target: Any muscle cell (FBbt:00005074) that is part of some larval somatic muscle (FBbt:00058297).
database_cross_reference: FBC:Autogenerated

larval apodeme
type: Class
equivalent class: Class
  intersection of: apodeme
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: apodeme
subclass of: Restriction
  on property: part of
  some values from: larval integumentary system
definition: Apodeme that is part of the late embryo/larva. Apodemes are not a continuous structure, but are split into two halves. In the embryo, this break is visible laterally. In the larva, the dorsal and ventral halves in the thoracic and abdominal segments are staggered, with the dorsal part being posterior to the ventral one.
has exact synonym: embryonic/larval apodeme
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001005
in subset: cur

Axiom
annotated source: larval apodeme
annotated property: definition
annotated target: Apodeme that is part of the late embryo/larva. Apodemes are not a continuous structure, but are split into two halves. In the embryo, this break is visible laterally. In the larva, the dorsal and ventral halves in the thoracic and abdominal segments are staggered, with the dorsal part being posterior to the ventral one.
database_cross_reference: FBC:SPR
database_cross_reference: FlyBase:FBrf0089570

larval abdominal apodeme
type: Class
equivalent class: Class
  intersection of: abdominal apodeme
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: larval apodeme
subclass of: abdominal apodeme
definition: Any abdominal apodeme of the larva.
has exact synonym: embryonic/larval abdominal apodeme
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001006
in subset: cur

Axiom
annotated source: larval abdominal apodeme
annotated property: definition
annotated target: Any abdominal apodeme of the larva.
database_cross_reference: FBC:Autogenerated

larval visceral muscle cell
type: Class
equivalent class: Class
  intersection of: visceral muscle cell
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: visceral muscle cell
subclass of: larval muscle cell
definition: Muscle cell of a muscle of the embryonic/larval intestinal tract. Circular and longitudinal fibers surround the entire intestinal tract, with the exception of the recurrent layer of the proventriculus. The circular fibers derive from a bilaterally symmetrical band of mesodermal cells extending continuously throughout most of the germ band. The longitudinal fibers derive from clusters of mesodermal cells which appear during stage 12 at the posterior end of the embryo and migrate anteriorly.
has alternative id: FBbt:00005654
has exact synonym: embryonic/larval visceral muscle cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001035
in subset: cur

Axiom
annotated source: larval visceral muscle cell
annotated property: definition
annotated target: Muscle cell of a muscle of the embryonic/larval intestinal tract. Circular and longitudinal fibers surround the entire intestinal tract, with the exception of the recurrent layer of the proventriculus. The circular fibers derive from a bilaterally symmetrical band of mesodermal cells extending continuously throughout most of the germ band. The longitudinal fibers derive from clusters of mesodermal cells which appear during stage 12 at the posterior end of the embryo and migrate anteriorly.
database_cross_reference: FlyBase:FBrf0064793
database_cross_reference: FlyBase:FBrf0089570

embryonic/larval gonadal sheath muscle cell
type: Class
subclass of: larval visceral muscle cell
subclass of: somatic trunk mesoderm derivative
subclass of: visceral trunk mesoderm derivative
subclass of: Restriction
  on property: part of
  some values from: gonadal sheath
subclass of: Restriction
  on property: develops from
  some values from: gonadal sheath proper primordium
definition: Muscle cell of the gonadal sheath muscle of the embryo or larva.
has alternative id: FBbt:00005658
has exact synonym: larval gonadal sheath muscle
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001054
in subset: cur

Axiom
annotated source: embryonic/larval gonadal sheath muscle cell
annotated property: definition
annotated target: Muscle cell of the gonadal sheath muscle of the embryo or larva.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

presumptive embryonic/larval nervous system
type: Class
subclass of: presumptive embryonic/larval system
definition: The sum of all the structures in the embryo that will develop into the embryonic/larval nervous system.
database_cross_reference: UBERON:6001055
has OBO namespace: fly_anatomy.ontology
has related synonym: embryonic nervous system
id: FBbt:00001055
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: presumptive embryonic/larval nervous system
annotated property: definition
annotated target: The sum of all the structures in the embryo that will develop into the embryonic/larval nervous system.
database_cross_reference: FlyBase:FBrf0031012

Axiom
annotated source: presumptive embryonic/larval nervous system
annotated property: hasRelatedSynonym
annotated target: embryonic nervous system
database_cross_reference: https://orcid.org/0000-0002-7073-9172

presumptive embryonic/larval central nervous system
type: Class
subclass of: presumptive embryonic/larval system
subclass of: Restriction
  on property: part of
  some values from: presumptive embryonic/larval nervous system
definition: The sum of all the structures in the embryo that will develop into the embryonic/larval central nervous system.
database_cross_reference: UBERON:6001056
has OBO namespace: fly_anatomy.ontology
has related synonym: embryonic central nervous system
id: FBbt:00001056
in subset: cur

Axiom
annotated source: presumptive embryonic/larval central nervous system
annotated property: definition
annotated target: The sum of all the structures in the embryo that will develop into the embryonic/larval central nervous system.
database_cross_reference: FlyBase:FBrf0031012

Axiom
annotated source: presumptive embryonic/larval central nervous system
annotated property: hasRelatedSynonym
annotated target: embryonic central nervous system
database_cross_reference: https://orcid.org/0000-0002-7073-9172

neurogenic region
type: Class
subclass of: developing embryonic structure
subclass of: Restriction
  on property: part of
  some values from: ectoderm
definition: Region that gives rise to the neuroblasts of the central nervous system (Bossing et al., 1996). An anterior region (procephalic neurogenic region) gives rise to the brain and a posterior, ventral region (ventral neuroectoderm) gives rise to the ventral nerve cord and gnathal ganglia (Bossing et al., 1996).
database_cross_reference: UBERON:0002346
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001057
in subset: cur

Axiom
annotated source: neurogenic region
annotated property: definition
annotated target: Region that gives rise to the neuroblasts of the central nervous system (Bossing et al., 1996). An anterior region (procephalic neurogenic region) gives rise to the brain and a posterior, ventral region (ventral neuroectoderm) gives rise to the ventral nerve cord and gnathal ganglia (Bossing et al., 1996).
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0090460
database_cross_reference: FlyBase:FBrf0098344

procephalic neurogenic region
type: Class
subclass of: neurogenic region
subclass of: Restriction
  on property: part of
  some values from: anterior ectoderm
subclass of: Restriction
  on property: part of
  some values from: embryonic head
definition: Tissue which becomes morphologically distinct shortly after cephalic furrow formation as two strips of about 80 enlarged cells which extend dorso-ventrally on either side of the developing head. It gives rise to neuroblasts of the brain.
has exact synonym: pregnathal neuroectoderm
has exact synonym: procephalic neuroectoderm
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001058
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: procephalic neurogenic region
annotated property: definition
annotated target: Tissue which becomes morphologically distinct shortly after cephalic furrow formation as two strips of about 80 enlarged cells which extend dorso-ventrally on either side of the developing head. It gives rise to neuroblasts of the brain.
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0090460

Axiom
annotated source: procephalic neurogenic region
annotated property: hasExactSynonym
annotated target: pregnathal neuroectoderm
database_cross_reference: FlyBase:FBrf0161020

Axiom
annotated source: procephalic neurogenic region
annotated property: hasExactSynonym
annotated target: procephalic neuroectoderm
database_cross_reference: FlyBase:FBrf0161020

embryonic brain
type: Class
subclass of: supraesophageal ganglion
subclass of: brain
subclass of: anterior ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: presumptive embryonic/larval central nervous system
subclass of: Restriction
  on property: develops from
  some values from: procephalic neurogenic region
definition: Brain of the embryo, consisting of the protocerebrum, deutocerebrum and tritocerebrum (Urbach and Technau, 2003; Crews, 2019). It develops from the procephalic neurogenic region (Urbach and Technau, 2003).
database_cross_reference: UBERON:6001060
database_cross_reference: VFB:FBbt_00001060
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001060
in subset: cur

Axiom
annotated source: embryonic brain
annotated property: definition
annotated target: Brain of the embryo, consisting of the protocerebrum, deutocerebrum and tritocerebrum (Urbach and Technau, 2003; Crews, 2019). It develops from the procephalic neurogenic region (Urbach and Technau, 2003).
database_cross_reference: FlyBase:FBrf0161020
database_cross_reference: FlyBase:FBrf0244240

ventral neurectoderm
type: Class
subclass of: neurogenic region
subclass of: epithelium
subclass of: Restriction
  on property: part of
  some values from: ventral ectoderm
definition: The ventrally/medially located ectodermal region of the trunk from which neuroblasts delaminate to form the ventral nerve cord and gnathal ganglia. This region becomes distinct during stage 8 when its cells become enlarged compared to those in the adjacent dorsal ectoderm.
has alternative id: FBbt:00000113
has exact synonym: P2 VenEc
has exact synonym: VenEc
has exact synonym: vNR
has exact synonym: ventral neurogenic region
has OBO namespace: fly_anatomy.ontology
has related synonym: neurectoderm
has related synonym: neuroectoderm
id: FBbt:00001061
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: ventral neurectoderm
annotated property: definition
annotated target: The ventrally/medially located ectodermal region of the trunk from which neuroblasts delaminate to form the ventral nerve cord and gnathal ganglia. This region becomes distinct during stage 8 when its cells become enlarged compared to those in the adjacent dorsal ectoderm.
database_cross_reference: FlyBase:FBrf0076117
database_cross_reference: FlyBase:FBrf0089570

Axiom
annotated source: ventral neurectoderm
annotated property: hasExactSynonym
annotated target: vNR
database_cross_reference: FlyBase:FBrf0090460

Axiom
annotated source: ventral neurectoderm
annotated property: hasExactSynonym
annotated target: ventral neurogenic region
database_cross_reference: FlyBase:FBrf0090460

larval ventral nerve cord
type: Class
subclass of: ventral nerve cord
subclass of: ganglion
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: larval central nervous system
subclass of: Restriction
  on property: develops from
  some values from: ventral nerve cord primordium
definition: Region of the larval central nervous system posterior to the gnathal neuromeres (Clark et al., 2018; Eschbach and Zlatic, 2020; Miroschnikow et al., 2020). It consists of three thoracic neuromeres, eight abdominal neuromeres and a terminal plexus (Clark et al., 2018).
has alternative id: FBbt:00001971
database_cross_reference: VFB:FBbt_00001102
has exact synonym: larval ventral ganglion
has exact synonym: vnc
has OBO namespace: fly_anatomy.ontology
has related synonym: ventral cord
id: FBbt:00001102
in subset: cur
comment: There is some inconsistency in the literature as to whether the larval gnathal ganglion is a part of the ventral nerve cord, many recent papers consider it to be a distinct region, so it is not included here.

Axiom
annotated source: larval ventral nerve cord
annotated property: definition
annotated target: Region of the larval central nervous system posterior to the gnathal neuromeres (Clark et al., 2018; Eschbach and Zlatic, 2020; Miroschnikow et al., 2020). It consists of three thoracic neuromeres, eight abdominal neuromeres and a terminal plexus (Clark et al., 2018).
database_cross_reference: FlyBase:FBrf0238752
database_cross_reference: FlyBase:FBrf0246261
database_cross_reference: FlyBase:FBrf0247585

presumptive embryonic/larval peripheral nervous system
type: Class
subclass of: presumptive embryonic/larval system
subclass of: Restriction
  on property: part of
  some values from: presumptive embryonic/larval nervous system
definition: The sum of all the structures in the embryo that will develop into the embryonic/larval peripheral nervous system.
has OBO namespace: fly_anatomy.ontology
has related synonym: embryonic peripheral nervous system
id: FBbt:00001134
in subset: cur

Axiom
annotated source: presumptive embryonic/larval peripheral nervous system
annotated property: definition
annotated target: The sum of all the structures in the embryo that will develop into the embryonic/larval peripheral nervous system.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

Axiom
annotated source: presumptive embryonic/larval peripheral nervous system
annotated property: hasRelatedSynonym
annotated target: embryonic peripheral nervous system
database_cross_reference: https://orcid.org/0000-0002-7073-9172

proneural cluster
type: Class
subclass of: anlage
definition: An equivalence group of the neurectoderm where all cells can, although only one will, become a neural progenitor cell.
database_cross_reference: UBERON:6001135
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001135
in subset: cur

Axiom
annotated source: proneural cluster
annotated property: definition
annotated target: An equivalence group of the neurectoderm where all cells can, although only one will, become a neural progenitor cell.
database_cross_reference: FlyBase:FBrf0074477
database_cross_reference: FlyBase:FBrf0089570

sensory mother cell
type: Class
subclass of: peripheral sensory precursor cell
subclass of: Restriction
  on property: part of
  some values from: proneural cluster
definition: Precursor cell that can give rise to all the neuronal and support cells that form a peripheral sense organ.
has exact synonym: SMC
has exact synonym: SOP
has exact synonym: sensory organ precursor cell
has exact synonym: sensory organ progenitor cell
has OBO namespace: fly_anatomy.ontology
has related synonym: sensillum precursor
has related synonym: sensory organ mother cell
id: FBbt:00001137
in subset: cur

Axiom
annotated source: sensory mother cell
annotated property: definition
annotated target: Precursor cell that can give rise to all the neuronal and support cells that form a peripheral sense organ.
database_cross_reference: FlyBase:FBrf0055951
database_cross_reference: FlyBase:FBrf0083795
database_cross_reference: FlyBase:FBrf0132424

Axiom
annotated source: sensory mother cell
annotated property: hasExactSynonym
annotated target: SMC
database_cross_reference: FlyBase:FBrf0055951

Axiom
annotated source: sensory mother cell
annotated property: hasExactSynonym
annotated target: SOP
database_cross_reference: FlyBase:FBrf0132424

Axiom
annotated source: sensory mother cell
annotated property: hasExactSynonym
annotated target: sensory organ precursor cell
database_cross_reference: FlyBase:FBrf0132424

Axiom
annotated source: sensory mother cell
annotated property: hasExactSynonym
annotated target: sensory organ progenitor cell
database_cross_reference: FlyBase:FBrf0132424

peripheral nervous system precursor cluster
type: Class
subclass of: disconnected anatomical group
subclass of: Restriction
  on property: part of
  some values from: presumptive embryonic/larval peripheral nervous system
subclass of: Restriction
  on property: develops from
  some values from: sensory nervous system primordium
definition: A cluster of embryonic precursors that will give rise to sensory organs in the late embryo and larva (Ghysen et al., 1986; Bodmer and Jan, 1987).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001139
in subset: cur

Axiom
annotated source: peripheral nervous system precursor cluster
annotated property: definition
annotated target: A cluster of embryonic precursors that will give rise to sensory organs in the late embryo and larva (Ghysen et al., 1986; Bodmer and Jan, 1987).
database_cross_reference: FlyBase:FBrf0045361
database_cross_reference: FlyBase:FBrf0047289

embryonic thoracic dorsal sensory organ precursor cluster
type: Class
equivalent class: Class
  intersection of: embryonic dorsal sensory organ precursor cluster
  intersection of: Restriction
    on property: part of
    some values from: thoracic segment
subclass of: embryonic dorsal sensory organ precursor cluster
subclass of: Restriction
  on property: part of
  some values from: embryonic thoracic segment
subclass of: Restriction
  on property: part of
  some values from: embryonic nervous system of thorax
definition: Any embryonic dorsal sensory organ precursor cluster (FBbt:00059182) that is part of some thoracic segment (FBbt:00000016).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001140
in subset: cur

Axiom
annotated source: embryonic thoracic dorsal sensory organ precursor cluster
annotated property: definition
annotated target: Any embryonic dorsal sensory organ precursor cluster (FBbt:00059182) that is part of some thoracic segment (FBbt:00000016).
database_cross_reference: FlyBase:FBrf0047289

dorsal thoracic external sensory organ precursor cell
type: Class
equivalent class: Class
  intersection of: external sensory organ precursor cell
  intersection of: Restriction
    on property: part of
    some values from: embryonic thoracic dorsal sensory organ precursor cluster
subclass of: developing embryonic structure
subclass of: external sensory organ precursor cell
subclass of: Restriction
  on property: part of
  some values from: embryonic thoracic dorsal sensory organ precursor cluster
definition: Any external sensory organ precursor cell (FBbt:00005164) that is part of some embryonic thoracic dorsal sensory organ precursor cluster (FBbt:00001140).
has broad synonym: dorsal thoracic es cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001147
in subset: cur

Axiom
annotated source: dorsal thoracic external sensory organ precursor cell
annotated property: definition
annotated target: Any external sensory organ precursor cell (FBbt:00005164) that is part of some embryonic thoracic dorsal sensory organ precursor cluster (FBbt:00001140).
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: dorsal thoracic external sensory organ precursor cell
annotated property: hasBroadSynonym
annotated target: dorsal thoracic es cell
database_cross_reference: FlyBase:FBrf0047289

embryonic thoracic ventral sensory organ precursor cluster group
type: Class
equivalent class: Class
  intersection of: embryonic ventral sensory organ precursor cluster group
  intersection of: Restriction
    on property: part of
    some values from: thoracic segment
subclass of: embryonic ventral sensory organ precursor cluster group
subclass of: Restriction
  on property: part of
  some values from: embryonic thoracic segment
definition: Any embryonic ventral sensory organ precursor cluster group (FBbt:00059198) that is part of some thoracic segment (FBbt:00000016).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001172
in subset: cur

Axiom
annotated source: embryonic thoracic ventral sensory organ precursor cluster group
annotated property: definition
annotated target: Any embryonic ventral sensory organ precursor cluster group (FBbt:00059198) that is part of some thoracic segment (FBbt:00000016).
database_cross_reference: FlyBase:FBrf0047289

ventral group thoracic external sensory organ precursor cell
type: Class
equivalent class: Class
  intersection of: external sensory organ precursor cell
  intersection of: Restriction
    on property: part of
    some values from: embryonic thoracic ventral sensory organ precursor cluster group
subclass of: developing embryonic structure
subclass of: external sensory organ precursor cell
subclass of: Restriction
  on property: part of
  some values from: embryonic thoracic ventral sensory organ precursor cluster group
definition: Any external sensory organ precursor cell (FBbt:00005164) that is part of some embryonic thoracic ventral sensory organ precursor cluster group (FBbt:00001172).
has broad synonym: ventral thoracic es cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001178
in subset: cur

Axiom
annotated source: ventral group thoracic external sensory organ precursor cell
annotated property: definition
annotated target: Any external sensory organ precursor cell (FBbt:00005164) that is part of some embryonic thoracic ventral sensory organ precursor cluster group (FBbt:00001172).
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: ventral group thoracic external sensory organ precursor cell
annotated property: hasBroadSynonym
annotated target: ventral thoracic es cell
database_cross_reference: FlyBase:FBrf0047289

embryonic abdominal dorsal sensory organ precursor cluster
type: Class
equivalent class: Class
  intersection of: embryonic dorsal sensory organ precursor cluster
  intersection of: Restriction
    on property: part of
    some values from: abdominal segment
subclass of: embryonic dorsal sensory organ precursor cluster
subclass of: Restriction
  on property: part of
  some values from: embryonic abdominal segment
subclass of: Restriction
  on property: part of
  some values from: embryonic nervous system of abdomen
definition: Any embryonic dorsal sensory organ precursor cluster (FBbt:00059182) that is part of some abdominal segment (FBbt:00000021).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001190
in subset: cur

Axiom
annotated source: embryonic abdominal dorsal sensory organ precursor cluster
annotated property: definition
annotated target: Any embryonic dorsal sensory organ precursor cluster (FBbt:00059182) that is part of some abdominal segment (FBbt:00000021).
database_cross_reference: FlyBase:FBrf0047289

dorsal abdominal external sensory organ precursor cell
type: Class
equivalent class: Class
  intersection of: external sensory organ precursor cell
  intersection of: Restriction
    on property: part of
    some values from: embryonic abdominal dorsal sensory organ precursor cluster
subclass of: developing embryonic structure
subclass of: external sensory organ precursor cell
subclass of: Restriction
  on property: part of
  some values from: embryonic abdominal dorsal sensory organ precursor cluster
definition: Any external sensory organ precursor cell (FBbt:00005164) that is part of some embryonic abdominal dorsal sensory organ precursor cluster (FBbt:00001190).
has broad synonym: dorsal abdominal es cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001197
in subset: cur

Axiom
annotated source: dorsal abdominal external sensory organ precursor cell
annotated property: definition
annotated target: Any external sensory organ precursor cell (FBbt:00005164) that is part of some embryonic abdominal dorsal sensory organ precursor cluster (FBbt:00001190).
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: dorsal abdominal external sensory organ precursor cell
annotated property: hasBroadSynonym
annotated target: dorsal abdominal es cell
database_cross_reference: FlyBase:FBrf0047289

embryonic abdominal ventral sensory organ precursor cluster group
type: Class
equivalent class: Class
  intersection of: embryonic ventral sensory organ precursor cluster group
  intersection of: Restriction
    on property: part of
    some values from: abdominal segment
subclass of: embryonic ventral sensory organ precursor cluster group
subclass of: Restriction
  on property: part of
  some values from: embryonic abdominal segment
definition: Any embryonic ventral sensory organ precursor cluster group (FBbt:00059198) that is part of some abdominal segment (FBbt:00000021).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001220
in subset: cur

Axiom
annotated source: embryonic abdominal ventral sensory organ precursor cluster group
annotated property: definition
annotated target: Any embryonic ventral sensory organ precursor cluster group (FBbt:00059198) that is part of some abdominal segment (FBbt:00000021).
database_cross_reference: FlyBase:FBrf0047289

ventral group abdominal external sensory organ precursor cell
type: Class
equivalent class: Class
  intersection of: external sensory organ precursor cell
  intersection of: Restriction
    on property: part of
    some values from: embryonic abdominal ventral sensory organ precursor cluster group
subclass of: developing embryonic structure
subclass of: external sensory organ precursor cell
subclass of: Restriction
  on property: part of
  some values from: embryonic abdominal ventral sensory organ precursor cluster group
definition: Any external sensory organ precursor cell (FBbt:00005164) that is part of some embryonic abdominal ventral sensory organ precursor cluster group (FBbt:00001220).
has broad synonym: ventral abdominal es cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001229
in subset: cur

Axiom
annotated source: ventral group abdominal external sensory organ precursor cell
annotated property: definition
annotated target: Any external sensory organ precursor cell (FBbt:00005164) that is part of some embryonic abdominal ventral sensory organ precursor cluster group (FBbt:00001220).
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: ventral group abdominal external sensory organ precursor cell
annotated property: hasBroadSynonym
annotated target: ventral abdominal es cell
database_cross_reference: FlyBase:FBrf0047289

embryonic glioblast
type: Class
equivalent class: Class
  intersection of: glioblast
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: embryonic neuroblast
subclass of: glioblast
definition: Glioblast of the embryo.
database_cross_reference: VFB:FBbt_00001244
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001244
in subset: cur

Axiom
annotated source: embryonic glioblast
annotated property: definition
annotated target: Glioblast of the embryo.
database_cross_reference: FlyBase:FBrf0105240

larval glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: glial cell
subclass of: Restriction
  on property: part of
  some values from: larval nervous system
definition: Glial cell of the late embryo/larva.
database_cross_reference: VFB:FBbt_00001251
has exact synonym: embryonic/larval glial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001251
in subset: cur

Axiom
annotated source: larval glial cell
annotated property: definition
annotated target: Glial cell of the late embryo/larva.
database_cross_reference: FlyBase:FBrf0050373
database_cross_reference: FlyBase:FBrf0053160
database_cross_reference: FlyBase:FBrf0054242
database_cross_reference: FlyBase:FBrf0090460
database_cross_reference: FlyBase:FBrf0098344
database_cross_reference: FlyBase:FBrf0105240
database_cross_reference: FlyBase:FBrf0205499
database_cross_reference: FlyBase:FBrf0214261

CNS surface glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: central nervous system
  intersection of: Restriction
    on property: part of
    some values from: perineurium
subclass of: CNS glial cell
subclass of: surface glial cell
definition: A glial cell that is part of (either layer of) the perineurium at the surface of the central nervous system.
has alternative id: FBbt:00001257
database_cross_reference: VFB:FBbt_00001252
has exact synonym: CNS glial cell of perineurium
has exact synonym: CNS surface associated glial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001252
in subset: cur

Axiom
annotated source: CNS surface glial cell
annotated property: definition
annotated target: A glial cell that is part of (either layer of) the perineurium at the surface of the central nervous system.
database_cross_reference: FlyBase:FBrf0082171
database_cross_reference: FlyBase:FBrf0234767
database_cross_reference: https://orcid.org/0000-0002-7073-9172

CNS glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: central nervous system
subclass of: glial cell
subclass of: Restriction
  on property: part of
  some values from: central nervous system
definition: Glial cell of the central nervous system.
database_cross_reference: VFB:FBbt_00001256
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001256
in subset: cur

Axiom
annotated source: CNS glial cell
annotated property: definition
annotated target: Glial cell of the central nervous system.
database_cross_reference: FlyBase:FBrf0206543

subperineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: subperineurial glial sheath
subclass of: surface glial cell
subclass of: Restriction
  on property: part of
  some values from: subperineurial glial sheath
definition: Glial cell that forms the subperineurial glial sheath. These cells are polyploid. They increase in size and ploidy as the nervous system grows during development (Kremer et al., 2017).
has alternative id: FBbt:00001254
has alternative id: FBbt:00005154
has broad synonym: surface glia
database_cross_reference: VFB:FBbt_00001258
has exact synonym: SPG
has exact synonym: inner perineural sheath cell
has exact synonym: inner perineurial sheath cell
has exact synonym: subperineurial associated glial cell
has OBO namespace: fly_anatomy.ontology
has related synonym: barrier glial cell
id: FBbt:00001258
in subset: cur

Axiom
annotated source: subperineurial glial cell
annotated property: definition
annotated target: Glial cell that forms the subperineurial glial sheath. These cells are polyploid. They increase in size and ploidy as the nervous system grows during development (Kremer et al., 2017).
database_cross_reference: FlyBase:FBrf0082171
database_cross_reference: FlyBase:FBrf0217041
database_cross_reference: FlyBase:FBrf0234767

Axiom
annotated source: subperineurial glial cell
annotated property: hasBroadSynonym
annotated target: surface glia
database_cross_reference: FlyBase:FBrf0082171

Axiom
annotated source: subperineurial glial cell
annotated property: hasExactSynonym
annotated target: SPG
database_cross_reference: FlyBase:FBrf0082171

Axiom
annotated source: subperineurial glial cell
annotated property: hasRelatedSynonym
annotated target: barrier glial cell
database_cross_reference: FlyBase:FBrf0058936

cell body glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: cell body rind of the central nervous system
subclass of: CNS glial cell
subclass of: Restriction
  on property: part of
  some values from: cell body rind of the central nervous system
definition: Glial cell with a nucleus amongst the neuronal cell bodies in the cell body rind. It is irregularly shaped, with processes that enclose the neuronal cell bodies.
database_cross_reference: VFB:FBbt_00001297
has exact synonym: CBG
has exact synonym: cell body-associated glial cell
has exact synonym: cortex associated CNS glial cell
has exact synonym: cortex glial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001297
in subset: cur
comment: Glial cells associated with axonal tracts (such as those associated with nerve roots) are excluded from this class of glial cells (Ito et al., 1995). Modeled as 'part of' their 'cell body rind' regions, though in practice some cell body glia have small projections into the neuropil - https://orcid.org/0000-0002-1373-1705.

Axiom
annotated source: cell body glial cell
annotated property: definition
annotated target: Glial cell with a nucleus amongst the neuronal cell bodies in the cell body rind. It is irregularly shaped, with processes that enclose the neuronal cell bodies.
database_cross_reference: FlyBase:FBrf0082171
database_cross_reference: FlyBase:FBrf0214261

Axiom
annotated source: cell body glial cell
annotated property: hasExactSynonym
annotated target: CBG
database_cross_reference: FlyBase:FBrf0082171

Axiom
annotated source: cell body glial cell
annotated property: hasExactSynonym
annotated target: cell body-associated glial cell
database_cross_reference: FlyBase:FBrf0214261

Axiom
annotated source: cell body glial cell
annotated property: hasExactSynonym
annotated target: cortex glial cell
database_cross_reference: FlyBase:FBrf0214261

embryonic/larval cell body glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: cell body rind of larval central nervous system
subclass of: cell body glial cell
subclass of: embryonic/larval lateral glial cell
subclass of: Restriction
  on property: part of
  some values from: cell body rind of larval central nervous system
definition: Glial cell located amongst neuronal cell bodies in the cell body rind of the embryonic/larval central nervous system.
database_cross_reference: VFB:FBbt_00001298
has exact synonym: embryonic/larval cortex glial cell
has exact synonym: larval CBG
has OBO namespace: fly_anatomy.ontology
has related synonym: CoG
id: FBbt:00001298
in subset: cur

Axiom
annotated source: embryonic/larval cell body glial cell
annotated property: definition
annotated target: Glial cell located amongst neuronal cell bodies in the cell body rind of the embryonic/larval central nervous system.
database_cross_reference: FlyBase:FBrf0082171
database_cross_reference: FlyBase:FBrf0214261
database_cross_reference: FlyBase:FBrf0237238

Axiom
annotated source: embryonic/larval cell body glial cell
annotated property: hasExactSynonym
annotated target: embryonic/larval cortex glial cell
database_cross_reference: FlyBase:FBrf0214261

Axiom
annotated source: embryonic/larval cell body glial cell
annotated property: hasExactSynonym
annotated target: larval CBG
database_cross_reference: FlyBase:FBrf0082171

PNS glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: peripheral nervous system
subclass of: glial cell
subclass of: Restriction
  on property: part of
  some values from: peripheral nervous system
definition: Glial cell that is part of the peripheral nervous system.
database_cross_reference: VFB:FBbt_00001320
has exact synonym: peripheral glial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001320
in subset: cur

Axiom
annotated source: PNS glial cell
annotated property: definition
annotated target: Glial cell that is part of the peripheral nervous system.
database_cross_reference: FBC:SPR

embryonic neuroblast
type: Class
equivalent class: Class
  intersection of: neuroblast
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: developing embryonic structure
subclass of: neuroblast
subclass of: Restriction
  on property: part of
  some values from: presumptive embryonic/larval nervous system
definition: Any neuroblast of the embryo.
database_cross_reference: VFB:FBbt_00001332
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001332
in subset: cur

Axiom
annotated source: embryonic neuroblast
annotated property: definition
annotated target: Any neuroblast of the embryo.
database_cross_reference: FlyBase:FBrf0055900

supraesophageal ganglion neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: supraesophageal ganglion
subclass of: CNS neuron
subclass of: Restriction
  on property: has soma location
  some values from: supraesophageal ganglion
definition: Any neuron (FBbt:00005106) that has its soma located in some supraesophageal ganglion (FBbt:00003626).
database_cross_reference: VFB:FBbt_00001366
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001366
in subset: cur

Axiom
annotated source: supraesophageal ganglion neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that has its soma located in some supraesophageal ganglion (FBbt:00003626).
database_cross_reference: FBC:Autogenerated

neuroblast of ventral nervous system
type: Class
subclass of: ventral ectoderm derivative
subclass of: segmentally-repeated neuroblast
subclass of: Restriction
  on property: develops from
  some values from: ventral neurectoderm
definition: Neuroblast that generates cells of the ventral nervous system, including interneurons, motor neurons and/or glial cells (Bossing et al., 1996). These neuroblasts derive from the ventral neurectoderm (Bossing et al., 1996).
database_cross_reference: VFB:FBbt_00001369
has exact synonym: VNC neuroblast
has OBO namespace: fly_anatomy.ontology
has related synonym: neuroblast of ventral nerve cord primordium
id: FBbt:00001369
in subset: EmbDevSlim
in subset: cur
comment: Applies to neuroblasts at all stages of development.

Axiom
annotated source: neuroblast of ventral nervous system
annotated property: definition
annotated target: Neuroblast that generates cells of the ventral nervous system, including interneurons, motor neurons and/or glial cells (Bossing et al., 1996). These neuroblasts derive from the ventral neurectoderm (Bossing et al., 1996).
database_cross_reference: FlyBase:FBrf0090460
database_cross_reference: FlyBase:FBrf0098344

larval neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: neuron
subclass of: Restriction
  on property: part of
  some values from: larval nervous system
definition: Neuron that is part of the larval nervous system. Neurons with functional roles in the larva are born during the embryonic phase of neurogenesis and further neurons, with adult-specific roles, are born during the postembryonic phase, which begins during larval development (Lacin and Truman, 2016).
database_cross_reference: VFB:FBbt_00001446
has exact synonym: embryonic/larval neuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001446
in subset: cur
comment: This includes immature secondary neurons that are found in the larva - https://orcid.org/0000-0002-1373-1705.

Axiom
annotated source: larval neuron
annotated property: definition
annotated target: Neuron that is part of the larval nervous system. Neurons with functional roles in the larva are born during the embryonic phase of neurogenesis and further neurons, with adult-specific roles, are born during the postembryonic phase, which begins during larval development (Lacin and Truman, 2016).
database_cross_reference: FlyBase:FBrf0090460
database_cross_reference: FlyBase:FBrf0098344
database_cross_reference: FlyBase:FBrf0231327

embryonic imaginal tissue
type: Class
equivalent class: Class
  intersection of: imaginal tissue
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: developing embryonic structure
subclass of: imaginal tissue
definition: Embryonic structure that will develop into a larval imaginal tissue, which will later form an adult structure (Cohen, 1993).
database_cross_reference: UBERON:6001648
has exact synonym: embryonic imaginal precursor
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001648
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic imaginal tissue
annotated property: definition
annotated target: Embryonic structure that will develop into a larval imaginal tissue, which will later form an adult structure (Cohen, 1993).
database_cross_reference: FlyBase:FBrf0064789

imaginal disc primordium
type: Class
subclass of: embryonic imaginal tissue
subclass of: primordium
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: ventral epidermis primordium
subclass of: Restriction
  on property: develops into
  some values from: imaginal disc
definition: Population of contiguous, morphologically distinct cells of the embryo that will proliferate to form an imaginal disc in the larva. During early embryogenesis the precursor is part of the epithelial sheet before segregating from the epithelial sheet by late embryogenesis (Cohen, 1993).
database_cross_reference: UBERON:6001649
has OBO namespace: fly_anatomy.ontology
has related synonym: imaginal disc specific anlage
id: FBbt:00001649
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: imaginal disc primordium
annotated property: definition
annotated target: Population of contiguous, morphologically distinct cells of the embryo that will proliferate to form an imaginal disc in the larva. During early embryogenesis the precursor is part of the epithelial sheet before segregating from the epithelial sheet by late embryogenesis (Cohen, 1993).
database_cross_reference: FBC:SPR
database_cross_reference: FlyBase:FBrf0064789

dorsal thoracic disc primordium
type: Class
subclass of: imaginal disc primordium
subclass of: Restriction
  on property: part of
  some values from: embryonic thoracic segment
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: develops from
  some values from: thoracic limb primordium
subclass of: Restriction
  on property: develops into
  some values from: dorsal thoracic disc
definition: Primordium of the embryo that will develop into a dorsal thoracic disc.
database_cross_reference: UBERON:6001653
has OBO namespace: fly_anatomy.ontology
has related synonym: dorsal thoracic disc specific anlage
id: FBbt:00001653
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: dorsal thoracic disc primordium
annotated property: definition
annotated target: Primordium of the embryo that will develop into a dorsal thoracic disc.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

dorsal prothoracic disc primordium
type: Class
equivalent class: Class
  intersection of: dorsal thoracic disc primordium
  intersection of: Restriction
    on property: part of
    some values from: prothoracic segment
subclass of: dorsal thoracic disc primordium
subclass of: Restriction
  on property: part of
  some values from: embryonic prothoracic segment
subclass of: Restriction
  on property: develops into
  some values from: humeral disc
definition: Any dorsal thoracic disc primordium (FBbt:00001653) that is part of some prothoracic segment (FBbt:00000017).
has OBO namespace: fly_anatomy.ontology
has related synonym: dorsal prothoracic disc specific anlage
id: FBbt:00001654
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: dorsal prothoracic disc primordium
annotated property: definition
annotated target: Any dorsal thoracic disc primordium (FBbt:00001653) that is part of some prothoracic segment (FBbt:00000017).
database_cross_reference: FBC:Autogenerated

dorsal mesothoracic disc primordium
type: Class
equivalent class: Class
  intersection of: dorsal thoracic disc primordium
  intersection of: Restriction
    on property: part of
    some values from: mesothoracic segment
subclass of: dorsal thoracic disc primordium
subclass of: Restriction
  on property: part of
  some values from: embryonic mesothoracic segment
subclass of: Restriction
  on property: develops into
  some values from: wing disc
definition: Any dorsal thoracic disc primordium (FBbt:00001653) that is part of some mesothoracic segment (FBbt:00000018).
database_cross_reference: UBERON:6001655
has OBO namespace: fly_anatomy.ontology
has related synonym: dorsal mesothoracic disc specific anlage
id: FBbt:00001655
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: dorsal mesothoracic disc primordium
annotated property: definition
annotated target: Any dorsal thoracic disc primordium (FBbt:00001653) that is part of some mesothoracic segment (FBbt:00000018).
database_cross_reference: FBC:Autogenerated

ventral thoracic disc primordium
type: Class
subclass of: imaginal disc primordium
subclass of: Restriction
  on property: part of
  some values from: embryonic thoracic segment
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: develops from
  some values from: thoracic limb primordium
subclass of: Restriction
  on property: develops into
  some values from: leg disc
definition: Primordium of the embryo that will develop into a ventral thoracic (leg) disc.
database_cross_reference: UBERON:6001657
has OBO namespace: fly_anatomy.ontology
has related synonym: ventral thoracic disc specific anlage
id: FBbt:00001657
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: ventral thoracic disc primordium
annotated property: definition
annotated target: Primordium of the embryo that will develop into a ventral thoracic (leg) disc.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

ventral prothoracic disc primordium
type: Class
equivalent class: Class
  intersection of: ventral thoracic disc primordium
  intersection of: Restriction
    on property: part of
    some values from: prothoracic segment
subclass of: ventral thoracic disc primordium
subclass of: Restriction
  on property: part of
  some values from: embryonic prothoracic segment
subclass of: Restriction
  on property: develops into
  some values from: prothoracic leg disc
definition: Any ventral thoracic disc primordium (FBbt:00001657) that is part of some prothoracic segment (FBbt:00000017).
database_cross_reference: UBERON:6001658
has OBO namespace: fly_anatomy.ontology
has related synonym: ventral prothoracic disc specific anlage
id: FBbt:00001658
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: ventral prothoracic disc primordium
annotated property: definition
annotated target: Any ventral thoracic disc primordium (FBbt:00001657) that is part of some prothoracic segment (FBbt:00000017).
database_cross_reference: FBC:Autogenerated

ventral mesothoracic disc primordium
type: Class
equivalent class: Class
  intersection of: ventral thoracic disc primordium
  intersection of: Restriction
    on property: part of
    some values from: mesothoracic segment
subclass of: ventral thoracic disc primordium
subclass of: Restriction
  on property: part of
  some values from: embryonic mesothoracic segment
subclass of: Restriction
  on property: develops into
  some values from: mesothoracic leg disc
definition: Any ventral thoracic disc primordium (FBbt:00001657) that is part of some mesothoracic segment (FBbt:00000018).
has OBO namespace: fly_anatomy.ontology
has related synonym: ventral mesothoracic disc specific anlage
id: FBbt:00001659
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: ventral mesothoracic disc primordium
annotated property: definition
annotated target: Any ventral thoracic disc primordium (FBbt:00001657) that is part of some mesothoracic segment (FBbt:00000018).
database_cross_reference: FBC:Autogenerated

larval circulatory system
type: Class
equivalent class: Class
  intersection of: circulatory system
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: circulatory system
subclass of: Restriction
  on property: part of
  some values from: larva
definition: Tubular system of the late embryo and larva through which hemolymph flows.
has alternative id: FBbt:00005677
database_cross_reference: UBERON:6001664
has exact synonym: embryonic/larval circulatory system
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001664
in subset: cur

Axiom
annotated source: larval circulatory system
annotated property: definition
annotated target: Tubular system of the late embryo and larva through which hemolymph flows.
database_cross_reference: FlyBase:FBrf0031012

embryonic/larval dorsal vessel
type: Class
equivalent class: Class
  intersection of: dorsal vessel
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: dorsal vessel
subclass of: Restriction
  on property: part of
  some values from: larval circulatory system
definition: A contractile tube in the embryo/larva that extends from immediately behind the posterior commissure of T1 to the arthrodial membrane of A7, into which it inserts via two caudally directed muscles which connect to lateral apodemes in A8. Throughout its length, its lumen is enclosed by just two cardial cells. This single-cell thick layer of cardial cells is surrounded by a single-cell thick layer of pericardial cells, except in the posterior thorax. In this region, it is surrounded by lymph gland in the anterior thorax where it passes through the ring gland. The whole tube is attached to the anterior region of each abdominal segment boundary by alary muscles.
has alternative id: FBbt:00005681
has exact synonym: larval dorsal vessel
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001673
in subset: cur

Axiom
annotated source: embryonic/larval dorsal vessel
annotated property: definition
annotated target: A contractile tube in the embryo/larva that extends from immediately behind the posterior commissure of T1 to the arthrodial membrane of A7, into which it inserts via two caudally directed muscles which connect to lateral apodemes in A8. Throughout its length, its lumen is enclosed by just two cardial cells. This single-cell thick layer of cardial cells is surrounded by a single-cell thick layer of pericardial cells, except in the posterior thorax. In this region, it is surrounded by lymph gland in the anterior thorax where it passes through the ring gland. The whole tube is attached to the anterior region of each abdominal segment boundary by alary muscles.
database_cross_reference: FlyBase:FBrf0089570

embryonic/larval hemocyte
type: Class
equivalent class: Class
  intersection of: hemocyte
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: hemocyte
subclass of: Restriction
  on property: part of
  some values from: larval circulatory system
definition: Blood cell of the embryo or larva that is involved in the cellular immune response.
has alternative id: FBbt:00005701
has exact synonym: embryonic/larval blood cell
has exact synonym: embryonic/larval haemocyte
has exact synonym: larval hemocyte
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001684
in subset: cur

Axiom
annotated source: embryonic/larval hemocyte
annotated property: definition
annotated target: Blood cell of the embryo or larva that is involved in the cellular immune response.
database_cross_reference: FlyBase:FBrf0037631

abdominal larval oenocyte group
type: Class
subclass of: portion of tissue
subclass of: dorsal ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: larval abdomen
subclass of: Restriction
  on property: develops from
  some values from: oenocyte primordium
definition: A cluster of 4-9 larval oenocytes situated bilaterally in each of abdominal segments 1-7 in a space between the dorsoventral muscles and the body wall. Each cell group is closely associated with an 'abdominal lateral pentascolopidial chordotonal organ lch5' and is supplied by its own tracheal branch.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001695
in subset: cur

Axiom
annotated source: abdominal larval oenocyte group
annotated property: definition
annotated target: A cluster of 4-9 larval oenocytes situated bilaterally in each of abdominal segments 1-7 in a space between the dorsoventral muscles and the body wall. Each cell group is closely associated with an 'abdominal lateral pentascolopidial chordotonal organ lch5' and is supplied by its own tracheal branch.
database_cross_reference: FlyBase:FBrf0007734
database_cross_reference: FlyBase:FBrf0134578

abdominal 6 larval oenocyte group
type: Class
equivalent class: Class
  intersection of: abdominal larval oenocyte group
  intersection of: Restriction
    on property: part of
    some values from: abdominal segment 6
subclass of: abdominal larval oenocyte group
subclass of: Restriction
  on property: part of
  some values from: larval abdominal segment 6
definition: Any abdominal larval oenocyte group (FBbt:00001695) that is part of some abdominal segment 6 (FBbt:00000027).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001701
in subset: cur

Axiom
annotated source: abdominal 6 larval oenocyte group
annotated property: definition
annotated target: Any abdominal larval oenocyte group (FBbt:00001695) that is part of some abdominal segment 6 (FBbt:00000027).
database_cross_reference: FBC:Autogenerated

larval adipose system
type: Class
equivalent class: Class
  intersection of: adipose system
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: adipose system
subclass of: Restriction
  on property: part of
  some values from: larva
definition: Adipose system of the late embryo/larva.
has alternative id: FBbt:00005709
has exact synonym: embryonic/larval adipose system
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001703
in subset: cur

Axiom
annotated source: larval adipose system
annotated property: definition
annotated target: Adipose system of the late embryo/larva.
database_cross_reference: FBC:SPR

embryonic/larval fat body
type: Class
equivalent class: Class
  intersection of: fat body
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: fat body
subclass of: somatic trunk mesoderm derivative
subclass of: Restriction
  on property: part of
  some values from: larval adipose system
subclass of: Restriction
  on property: develops from
  some values from: fat body primordium
definition: Fully developed fat body of the late embryo (from stage 17 onward) or the larva. It is a bilateral, multilobed organ that extends the length of the insect (Butterworth et al., 1965). It is one cell thick and between one and ten cells wide (Butterworth et al., 1965). Large holes and clefts form during stage 17, giving the fat body its definitive larval form (Campos-Ortega and Hartenstein, 1997).
has alternative id: FBbt:00005711
has exact synonym: larval fat body
has exact synonym: larval fatbody
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001704
in subset: cur

Axiom
annotated source: embryonic/larval fat body
annotated property: definition
annotated target: Fully developed fat body of the late embryo (from stage 17 onward) or the larva. It is a bilateral, multilobed organ that extends the length of the insect (Butterworth et al., 1965). It is one cell thick and between one and ten cells wide (Butterworth et al., 1965). Large holes and clefts form during stage 17, giving the fat body its definitive larval form (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0017184
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0238315

Axiom
annotated source: embryonic/larval fat body
annotated property: hasExactSynonym
annotated target: larval fat body
database_cross_reference: FlyBase:FBrf0238315

Axiom
annotated source: embryonic/larval fat body
annotated property: hasExactSynonym
annotated target: larval fatbody
database_cross_reference: FlyBase:FBrf0016348

larval endocrine system
type: Class
equivalent class: Class
  intersection of: endocrine system
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: endocrine system
subclass of: Restriction
  on property: part of
  some values from: larva
definition: Endocrine system of the late embryo/larva.
has alternative id: FBbt:00005713
has exact synonym: embryonic/larval endocrine system
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001715
in subset: cur

Axiom
annotated source: larval endocrine system
annotated property: definition
annotated target: Endocrine system of the late embryo/larva.
database_cross_reference: FBC:SPR

corpus allatum primordium
type: Class
subclass of: ring gland primordium
subclass of: trunk mesoderm derivative
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: cardiogenic mesoderm
subclass of: Restriction
  on property: develops into
  some values from: embryonic/larval corpus allatum
definition: The primordium that will form the embryonic/larval corpus allatum, a substructure of the embryonic/larval ring gland. It is a paired structure that becomes distinct in early dorsal closure between the head mesoderm and the epidermis of the gnathal segments. During dorsal closure the paired primordia move dorsally to meet and fuse above the cardioblasts of the developing aorta.
has OBO namespace: fly_anatomy.ontology
has related synonym: embryonic corpus allatum
id: FBbt:00001716
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: corpus allatum primordium
annotated property: definition
annotated target: The primordium that will form the embryonic/larval corpus allatum, a substructure of the embryonic/larval ring gland. It is a paired structure that becomes distinct in early dorsal closure between the head mesoderm and the epidermis of the gnathal segments. During dorsal closure the paired primordia move dorsally to meet and fuse above the cardioblasts of the developing aorta.
database_cross_reference: FlyBase:FBrf0089570

corpus cardiacum primordium
type: Class
subclass of: ring gland primordium
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops into
  some values from: embryonic/larval corpus cardiacum
definition: The corpora cardiaca precursor first appear during stage 10 as two pairs of head mesoderm cells between the roof of the stomodeum and the inner surface of the brain primordium that derive from the anterior lip of the ventral furrow. Between stages 11 and 15, these cells migrate posteriorly, gradually increasing in number. During stage 15, they fuse with the precursors of the corpus allatum from the gnathal mesoderm to form the ring gland.
has alternative id: FBbt:00001720
has OBO namespace: fly_anatomy.ontology
has related synonym: P1 CC
has related synonym: corpus cardiacum placode
has related synonym: embryonic corpus cardiacum
id: FBbt:00001717
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: corpus cardiacum primordium
annotated property: definition
annotated target: The corpora cardiaca precursor first appear during stage 10 as two pairs of head mesoderm cells between the roof of the stomodeum and the inner surface of the brain primordium that derive from the anterior lip of the ventral furrow. Between stages 11 and 15, these cells migrate posteriorly, gradually increasing in number. During stage 15, they fuse with the precursors of the corpus allatum from the gnathal mesoderm to form the ring gland.
database_cross_reference: FlyBase:FBrf0179777

Axiom
annotated source: corpus cardiacum primordium
annotated property: hasRelatedSynonym
annotated target: P1 CC
database_cross_reference: https://orcid.org/0000-0002-7073-9172

retrocerebral complex
type: Class
subclass of: cell cluster organ
subclass of: Restriction
  on property: part of
  some values from: ring gland
definition: The endocrine complex which consists of the corpus cardiacum and corpus allatum (Hartenstein, 2006; Lee et al., 2008).
database_cross_reference: UBERON:0012325
has exact synonym: CC-CA
has exact synonym: retrocerebral neuroendocrine complex
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001718
in subset: cur
comment: This is the common part of the adult (CA, CC, HG) and larval (CA, CC, PG) ring glands, but terminology seems to be very rarely used for the larva - https://orcid.org/0000-0002-1373-1705.

Axiom
annotated source: retrocerebral complex
annotated property: definition
annotated target: The endocrine complex which consists of the corpus cardiacum and corpus allatum (Hartenstein, 2006; Lee et al., 2008).
database_cross_reference: FlyBase:FBrf0194938
database_cross_reference: FlyBase:FBrf0204201
database_cross_reference: FlyBase:FBrf0239029

Axiom
annotated source: retrocerebral complex
annotated property: hasExactSynonym
annotated target: CC-CA
database_cross_reference: FlyBase:FBrf0204742

Axiom
annotated source: retrocerebral complex
annotated property: hasExactSynonym
annotated target: retrocerebral neuroendocrine complex
database_cross_reference: FlyBase:FBrf0187136

ring gland
type: Class
subclass of: anatomical cluster
subclass of: endocrine system component
definition: A cluster that surrounds the aorta, dorsal to the esophagus. It is composed of the corpus allatum (CA), corpus cardiacum (CC) and the prothoracic gland in the larva and the CA, CC and hypocerebral ganglion in the adult (Hartenstein, 1993). In the larva it is found anterior to the brain (Dai and Gilbert, 1991). The gland migrates posteriorly during pupal stages and the larval prothoracic gland degenerates (Dai and Gilbert, 1991). In the adult it is found posterior to the brain, just anterior to the proventriculus (Nassel and Zandawala, 2020).
database_cross_reference: UBERON:6001722
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001722
in subset: FB gloss
in subset: cur

Axiom
annotated source: ring gland
annotated property: definition
annotated target: A cluster that surrounds the aorta, dorsal to the esophagus. It is composed of the corpus allatum (CA), corpus cardiacum (CC) and the prothoracic gland in the larva and the CA, CC and hypocerebral ganglion in the adult (Hartenstein, 1993). In the larva it is found anterior to the brain (Dai and Gilbert, 1991). The gland migrates posteriorly during pupal stages and the larval prothoracic gland degenerates (Dai and Gilbert, 1991). In the adult it is found posterior to the brain, just anterior to the proventriculus (Nassel and Zandawala, 2020).
database_cross_reference: FlyBase:FBrf0053727
database_cross_reference: FlyBase:FBrf0064803
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0179777
database_cross_reference: FlyBase:FBrf0239029
database_cross_reference: FlyBase:FBrf0247015

prothoracic gland
type: Class
subclass of: neurohemal organ
subclass of: dorsal ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: larval ring gland
subclass of: Restriction
  on property: continuous with
  some values from: embryonic/larval corpus allatum
subclass of: Restriction
  on property: continuous with
  some values from: embryonic/larval corpus cardiacum
subclass of: Restriction
  on property: develops from
  some values from: prothoracic gland primordium
definition: Component of the larval ring gland that is continuous with the corpus cardiacum at its ventroposterior end, encircles the aorta, and surrounds the medially-located corpus allatum at its dorsoanterior end (Dai and Gilbert, 1991; de Velasco et al., 2004; Nassel and Zandawala, 2020). It is composed of very few cells in the late embryo, but these increase in size and number during larval development (de Velasco et al., 2004). It produces ecdysone and is most active in the early wandering third instar (Dai and Gilbert, 1991; Nassel and Zandawala, 2020). During pupal development, its cells separate, shrink and degenerate and none are found attached to the adult corpus allatum or corpus cardiacum after eclosion (Dai and Gilbert, 1991).
has exact synonym: PTG
has exact synonym: thoracic gland
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001724
in subset: cur

Axiom
annotated source: prothoracic gland
annotated property: definition
annotated target: Component of the larval ring gland that is continuous with the corpus cardiacum at its ventroposterior end, encircles the aorta, and surrounds the medially-located corpus allatum at its dorsoanterior end (Dai and Gilbert, 1991; de Velasco et al., 2004; Nassel and Zandawala, 2020). It is composed of very few cells in the late embryo, but these increase in size and number during larval development (de Velasco et al., 2004). It produces ecdysone and is most active in the early wandering third instar (Dai and Gilbert, 1991; Nassel and Zandawala, 2020). During pupal development, its cells separate, shrink and degenerate and none are found attached to the adult corpus allatum or corpus cardiacum after eclosion (Dai and Gilbert, 1991).
database_cross_reference: FlyBase:FBrf0053727
database_cross_reference: FlyBase:FBrf0064803
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0179777
database_cross_reference: FlyBase:FBrf0247015

Axiom
annotated source: prothoracic gland
annotated property: hasExactSynonym
annotated target: PTG
database_cross_reference: FlyBase:FBrf0247015

Axiom
annotated source: prothoracic gland
annotated property: hasExactSynonym
annotated target: thoracic gland
database_cross_reference: FlyBase:FBrf0064803
database_cross_reference: FlyBase:FBrf0089570

embryonic/larval corpus allatum
type: Class
subclass of: corpus allatum
subclass of: trunk mesoderm derivative
subclass of: Restriction
  on property: part of
  some values from: gnathal segment
subclass of: Restriction
  on property: part of
  some values from: larval retrocerebral complex
subclass of: Restriction
  on property: continuous with
  some values from: prothoracic gland
subclass of: Restriction
  on property: develops from
  some values from: corpus allatum primordium
definition: Neurohemal organ found medially in the anterodorsal part of the larval ring gland, surrounded by cells of the prothoracic gland (Dai and Gilbert, 1991; de Velasco et al., 2004). It is composed of smaller cells than the prothoracic gland (Dai and Gilbert, 1991). It produces juvenile hormone (Dai and Gilbert, 1991; Hartenstein, 1993).
has alternative id: FBbt:00001719
has exact synonym: larval corpus allatum
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001725
in subset: cur

Axiom
annotated source: embryonic/larval corpus allatum
annotated property: definition
annotated target: Neurohemal organ found medially in the anterodorsal part of the larval ring gland, surrounded by cells of the prothoracic gland (Dai and Gilbert, 1991; de Velasco et al., 2004). It is composed of smaller cells than the prothoracic gland (Dai and Gilbert, 1991). It produces juvenile hormone (Dai and Gilbert, 1991; Hartenstein, 1993).
database_cross_reference: FlyBase:FBrf0053727
database_cross_reference: FlyBase:FBrf0064803
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0179777

embryonic/larval corpus cardiacum
type: Class
subclass of: corpus cardiacum
subclass of: Restriction
  on property: part of
  some values from: gnathal segment
subclass of: Restriction
  on property: part of
  some values from: larval retrocerebral complex
subclass of: Restriction
  on property: continuous with
  some values from: prothoracic gland
subclass of: Restriction
  on property: develops from
  some values from: corpus cardiacum primordium
definition: Region of the larval ring gland closest to the brain that forms a U-shape around the floor of the aorta (Dai and Gilbert, 1991; de Velasco et al., 2004). It is connected to the brain by the nervi corporis cardiaci, which carry axons of secretory neurons that release neuropeptides in this location (Dirksen et al., 2008). It produces Adipokinetic hormone (Lee and Park, 2004) and sequesters insulin-like peptides released by insulin secreting cells of the pars intercerebralis (Ghosh et al., 2022). These two hormones are packaged into the same secretory vesicles (Ghosh et al., 2022).
has exact synonym: larval corpus cardiacum
has OBO namespace: fly_anatomy.ontology
has related synonym: corpora cardiacum
id: FBbt:00001726
in subset: cur

Axiom
annotated source: embryonic/larval corpus cardiacum
annotated property: definition
annotated target: Region of the larval ring gland closest to the brain that forms a U-shape around the floor of the aorta (Dai and Gilbert, 1991; de Velasco et al., 2004). It is connected to the brain by the nervi corporis cardiaci, which carry axons of secretory neurons that release neuropeptides in this location (Dirksen et al., 2008). It produces Adipokinetic hormone (Lee and Park, 2004) and sequesters insulin-like peptides released by insulin secreting cells of the pars intercerebralis (Ghosh et al., 2022). These two hormones are packaged into the same secretory vesicles (Ghosh et al., 2022).
database_cross_reference: FlyBase:FBrf0053727
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0178933
database_cross_reference: FlyBase:FBrf0179777
database_cross_reference: FlyBase:FBrf0204742
database_cross_reference: FlyBase:FBrf0253296

larva
type: Class
subclass of: organism
subclass of: Restriction
  on property: develops from
  some values from: embryo
definition: Organism during the period between hatching and prepupa formation.
database_cross_reference: UBERON:0002548
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001727
in subset: FB gloss
in subset: cur
in subset: larval OF

Axiom
annotated source: larva
annotated property: definition
annotated target: Organism during the period between hatching and prepupa formation.
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0089570

larval tagma
type: Class
equivalent class: Class
  intersection of: tagma
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: tagma
subclass of: Restriction
  on property: part of
  some values from: larva
definition: Any tagma of the larva.
database_cross_reference: UBERON:6001728
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001728
in subset: cur

Axiom
annotated source: larval tagma
annotated property: definition
annotated target: Any tagma of the larva.
database_cross_reference: FBC:Autogenerated

larval segment
type: Class
equivalent class: Class
  intersection of: segment
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: segment
subclass of: Restriction
  on property: part of
  some values from: larva
subclass of: Restriction
  on property: develops from
  some values from: embryonic segment
definition: Any segment of the larva.
database_cross_reference: UBERON:6001729
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001729
in subset: cur
in subset: larval OF

Axiom
annotated source: larval segment
annotated property: definition
annotated target: Any segment of the larva.
database_cross_reference: FBC:Autogenerated

larval head
type: Class
equivalent class: Class
  intersection of: head
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: head
subclass of: larval tagma
definition: Any head of the larva.
database_cross_reference: UBERON:6001730
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001730
in subset: cur
in subset: larval OF

Axiom
annotated source: larval head
annotated property: definition
annotated target: Any head of the larva.
database_cross_reference: FBC:Autogenerated

larval head segment
type: Class
equivalent class: Class
  intersection of: head segment
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: head segment
subclass of: larval segment
subclass of: Restriction
  on property: part of
  some values from: larval head
definition: Any head segment of the larva.
database_cross_reference: UBERON:6001732
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001732
in subset: cur
in subset: larval OF

Axiom
annotated source: larval head segment
annotated property: definition
annotated target: Any head segment of the larva.
database_cross_reference: FlyBase:FBrf0075072

larval gnathal segment
type: Class
equivalent class: Class
  intersection of: gnathal segment
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: gnathal segment
subclass of: larval head segment
definition: Any gnathal segment of the larva.
database_cross_reference: UBERON:6001737
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001737
in subset: cur

Axiom
annotated source: larval gnathal segment
annotated property: definition
annotated target: Any gnathal segment of the larva.
database_cross_reference: FBC:Autogenerated

larval thorax
type: Class
equivalent class: Class
  intersection of: thorax
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: thorax
subclass of: larval tagma
definition: Any thorax of the larva.
database_cross_reference: UBERON:6001741
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001741
in subset: cur

Axiom
annotated source: larval thorax
annotated property: definition
annotated target: Any thorax of the larva.
database_cross_reference: FBC:Autogenerated

larval thoracic segment
type: Class
equivalent class: Class
  intersection of: thoracic segment
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: thoracic segment
subclass of: larval segment
subclass of: Restriction
  on property: part of
  some values from: larval thorax
definition: Any thoracic segment of the larva.
database_cross_reference: UBERON:6001742
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001742
in subset: cur

Axiom
annotated source: larval thoracic segment
annotated property: definition
annotated target: Any thoracic segment of the larva.
database_cross_reference: FBC:Autogenerated

larval prothoracic segment
type: Class
equivalent class: Class
  intersection of: prothoracic segment
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: prothoracic segment
subclass of: larval thoracic segment
definition: Any prothoracic segment of the larva.
database_cross_reference: UBERON:6001743
has OBO namespace: fly_anatomy.ontology
has related synonym: prothorax
has related synonym: t1
has related synonym: thoracic segment 1
id: FBbt:00001743
in subset: cur

Axiom
annotated source: larval prothoracic segment
annotated property: definition
annotated target: Any prothoracic segment of the larva.
database_cross_reference: FBC:Autogenerated

larval mesothoracic segment
type: Class
equivalent class: Class
  intersection of: mesothoracic segment
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: mesothoracic segment
subclass of: larval thoracic segment
definition: Any mesothoracic segment of the larva.
database_cross_reference: UBERON:6001744
has OBO namespace: fly_anatomy.ontology
has related synonym: mesothorax
has related synonym: t2
has related synonym: thoracic segment 2
id: FBbt:00001744
in subset: cur

Axiom
annotated source: larval mesothoracic segment
annotated property: definition
annotated target: Any mesothoracic segment of the larva.
database_cross_reference: FBC:Autogenerated

larval abdomen
type: Class
equivalent class: Class
  intersection of: abdomen
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: abdomen
subclass of: larval tagma
definition: Any abdomen of the larva.
database_cross_reference: UBERON:6001746
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001746
in subset: cur

Axiom
annotated source: larval abdomen
annotated property: definition
annotated target: Any abdomen of the larva.
database_cross_reference: FBC:Autogenerated

larval abdominal segment
type: Class
equivalent class: Class
  intersection of: abdominal segment
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: abdominal segment
subclass of: larval segment
subclass of: Restriction
  on property: part of
  some values from: larval abdomen
definition: Any abdominal segment of the larva.
database_cross_reference: UBERON:6001747
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001747
in subset: cur

Axiom
annotated source: larval abdominal segment
annotated property: definition
annotated target: Any abdominal segment of the larva.
database_cross_reference: FBC:Autogenerated

larval abdominal segment 6
type: Class
equivalent class: Class
  intersection of: abdominal segment 6
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: abdominal segment 6
subclass of: larval abdominal segment A2-7
definition: Any abdominal segment 6 of the larva.
has OBO namespace: fly_anatomy.ontology
has related synonym: a6
id: FBbt:00001753
in subset: cur

Axiom
annotated source: larval abdominal segment 6
annotated property: definition
annotated target: Any abdominal segment 6 of the larva.
database_cross_reference: FBC:Autogenerated

larval abdominal segment 11
type: Class
equivalent class: Class
  intersection of: abdominal segment 11
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: abdominal segment 11
subclass of: larval terminal segment
subclass of: Restriction
  on property: part of
  some values from: larval telson
definition: Rudimentary larval abdominal segment that surrounds the anal opening.
has OBO namespace: fly_anatomy.ontology
has related synonym: a11
id: FBbt:00001758
in subset: cur

Axiom
annotated source: larval abdominal segment 11
annotated property: definition
annotated target: Rudimentary larval abdominal segment that surrounds the anal opening.
database_cross_reference: FlyBase:FBrf0064788

larval telson
type: Class
equivalent class: Class
  intersection of: telson
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: telson
subclass of: Restriction
  on property: part of
  some values from: larval abdomen
definition: Any telson of the larva.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001759
in subset: cur

Axiom
annotated source: larval telson
annotated property: definition
annotated target: Any telson of the larva.
database_cross_reference: FBC:Autogenerated

larval imaginal tissue
type: Class
equivalent class: Class
  intersection of: imaginal tissue
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: imaginal tissue
subclass of: Restriction
  on property: part of
  some values from: larva
subclass of: Restriction
  on property: develops from
  some values from: embryonic imaginal tissue
definition: Imaginal tissue that is found in the larva and will develop into an adult structure during metamorphosis.
database_cross_reference: UBERON:6001760
has exact synonym: embryonic/larval imaginal precursor
has exact synonym: larval imaginal precursor
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001760
in subset: cur

Axiom
annotated source: larval imaginal tissue
annotated property: definition
annotated target: Imaginal tissue that is found in the larva and will develop into an adult structure during metamorphosis.
database_cross_reference: FlyBase:FBrf0064789

imaginal disc
type: Class
subclass of: larval imaginal tissue
subclass of: multi-tissue structure
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: develops from
  some values from: imaginal disc primordium
definition: A sac shaped epithelial structure in the larva that gives rise to part of the adult integumentary system. One side of the sac consists of peripodial epithelium, the other of columnar epithelium. A single anterior-posterior compartment boundary bisects both peripodial membrane and columnar epithelium. Cells do not cross this boundary during growth and development of the disc.
database_cross_reference: UBERON:0000939
has OBO namespace: fly_anatomy.ontology
has related synonym: imaginal disk
id: FBbt:00001761
in subset: FB gloss
in subset: cur

Axiom
annotated source: imaginal disc
annotated property: definition
annotated target: A sac shaped epithelial structure in the larva that gives rise to part of the adult integumentary system. One side of the sac consists of peripodial epithelium, the other of columnar epithelium. A single anterior-posterior compartment boundary bisects both peripodial membrane and columnar epithelium. Cells do not cross this boundary during growth and development of the disc.
database_cross_reference: FBC:GG

dorsal thoracic disc
type: Class
subclass of: imaginal disc
subclass of: Restriction
  on property: part of
  some values from: larval thoracic segment
subclass of: Restriction
  on property: develops from
  some values from: dorsal thoracic disc primordium
definition: Imaginal disc that is a precursor of dorsal thoracic structures of the adult.
database_cross_reference: UBERON:6001776
has exact synonym: dorsal thoracic disk
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001776
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: dorsal thoracic disc
annotated property: definition
annotated target: Imaginal disc that is a precursor of dorsal thoracic structures of the adult.
database_cross_reference: FlyBase:FBrf0064789
database_cross_reference: FlyBase:FBrf0064803

humeral disc
type: Class
equivalent class: Class
  intersection of: dorsal thoracic disc
  intersection of: Restriction
    on property: part of
    some values from: prothoracic segment
subclass of: dorsal thoracic disc
subclass of: Restriction
  on property: part of
  some values from: larval prothoracic segment
subclass of: Restriction
  on property: develops from
  some values from: dorsal prothoracic disc primordium
definition: Dorsal imaginal disc of the prothoracic segment that is the precursor of structures of the adult dorsal prothorax including the humerus.
has exact synonym: dorsal prothoracic disc
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001777
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: humeral disc
annotated property: definition
annotated target: Dorsal imaginal disc of the prothoracic segment that is the precursor of structures of the adult dorsal prothorax including the humerus.
database_cross_reference: FlyBase:FBrf0064789

wing disc
type: Class
equivalent class: Class
  intersection of: dorsal thoracic disc
  intersection of: Restriction
    on property: part of
    some values from: mesothoracic segment
subclass of: dorsal thoracic disc
subclass of: Restriction
  on property: part of
  some values from: larval mesothoracic segment
subclass of: Restriction
  on property: develops from
  some values from: dorsal mesothoracic disc primordium
definition: Dorsal imaginal disc of the mesothorax. Precursor of dorsal mesothoracic structures of the adult including the postnotum, scutum, scutellum, wing, wing hinge and part of the notal pleura.
database_cross_reference: UBERON:6001778
has exact synonym: dorsal mesothoracic disc
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001778
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: wing disc
annotated property: definition
annotated target: Dorsal imaginal disc of the mesothorax. Precursor of dorsal mesothoracic structures of the adult including the postnotum, scutum, scutellum, wing, wing hinge and part of the notal pleura.
database_cross_reference: FlyBase:FBrf0064789

leg disc
type: Class
subclass of: imaginal disc
subclass of: Restriction
  on property: part of
  some values from: larval thoracic segment
subclass of: Restriction
  on property: develops from
  some values from: ventral thoracic disc primordium
definition: Imaginal disc that is a precursor of a leg (a ventral thoracic structure of the adult).
database_cross_reference: UBERON:6001780
has exact synonym: ventral thoracic disc
has exact synonym: ventral thoracic disk
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001780
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: leg disc
annotated property: definition
annotated target: Imaginal disc that is a precursor of a leg (a ventral thoracic structure of the adult).
database_cross_reference: FlyBase:FBrf0064789
database_cross_reference: FlyBase:FBrf0064803

prothoracic leg disc
type: Class
equivalent class: Class
  intersection of: leg disc
  intersection of: Restriction
    on property: part of
    some values from: prothoracic segment
subclass of: leg disc
subclass of: Restriction
  on property: part of
  some values from: larval prothoracic segment
subclass of: Restriction
  on property: develops from
  some values from: ventral prothoracic disc primordium
definition: Imaginal disc of the ventral prothoracic segment. Precursor of structures of the adult ventral prothorax including the prothoracic (1st) leg.
database_cross_reference: UBERON:6001781
has exact synonym: 1st leg disc
has exact synonym: T1 leg disc
has exact synonym: ventral prothoracic disc
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001781
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: prothoracic leg disc
annotated property: definition
annotated target: Imaginal disc of the ventral prothoracic segment. Precursor of structures of the adult ventral prothorax including the prothoracic (1st) leg.
database_cross_reference: FlyBase:FBrf0064789

mesothoracic leg disc
type: Class
equivalent class: Class
  intersection of: leg disc
  intersection of: Restriction
    on property: part of
    some values from: mesothoracic segment
subclass of: leg disc
subclass of: Restriction
  on property: part of
  some values from: larval mesothoracic segment
subclass of: Restriction
  on property: develops from
  some values from: ventral mesothoracic disc primordium
definition: Imaginal disc of the ventral mesothoracic segment. Precursor of structures of the adult ventral mesothorax including the mesothoracic (2nd) leg.
has exact synonym: 2nd leg disc
has exact synonym: T2 leg disc
has exact synonym: ventral mesothoracic disc
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001782
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: mesothoracic leg disc
annotated property: definition
annotated target: Imaginal disc of the ventral mesothoracic segment. Precursor of structures of the adult ventral mesothorax including the mesothoracic (2nd) leg.
database_cross_reference: FlyBase:FBrf0064789

histoblast
type: Class
subclass of: somatic precursor cell
subclass of: dorsal ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: histoblast nest
subclass of: Restriction
  on property: develops from
  some values from: abdominal histoblast primordium
definition: A progenitor cell found in the larval epidermis that produces the adult external abdomen. These cells are part of the larval epidermis, secrete cuticle and contribute to larval epithelial patterning. They can be distinguished from the larval epidermal cells due to their small size and the fact that they remain diploid (Martinez Arias, 1993).
database_cross_reference: CL:0000373
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001789
in subset: cur

Axiom
annotated source: histoblast
annotated property: definition
annotated target: A progenitor cell found in the larval epidermis that produces the adult external abdomen. These cells are part of the larval epidermis, secrete cuticle and contribute to larval epithelial patterning. They can be distinguished from the larval epidermal cells due to their small size and the fact that they remain diploid (Martinez Arias, 1993).
database_cross_reference: FlyBase:FBrf0064786

histoblast nest
type: Class
subclass of: larval imaginal tissue
subclass of: dorsal ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: larval abdominal segment
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval epidermis
subclass of: Restriction
  on property: develops from
  some values from: abdominal histoblast primordium
definition: One of several groups of histoblasts in the epidermis of the larval abdomen that gives rise to part of the adult external abdomen during metamorphosis.
database_cross_reference: UBERON:6001790
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001790
in subset: FB gloss
in subset: cur

Axiom
annotated source: histoblast nest
annotated property: definition
annotated target: One of several groups of histoblasts in the epidermis of the larval abdomen that gives rise to part of the adult external abdomen during metamorphosis.
database_cross_reference: FlyBase:FBrf0064786

dorsal histoblast nest abdominal
type: Class
subclass of: histoblast nest
subclass of: dorsal imaginal tissue
definition: One of two histoblast nests per abdominal hemisegment (found in A1-A7). It is located in a dorsal position in the epidermis of the larval abdomen.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001791
in subset: cur

Axiom
annotated source: dorsal histoblast nest abdominal
annotated property: definition
annotated target: One of two histoblast nests per abdominal hemisegment (found in A1-A7). It is located in a dorsal position in the epidermis of the larval abdomen.
database_cross_reference: FlyBase:FBrf0064786

anterior dorsal histoblast nest abdominal
type: Class
subclass of: dorsal histoblast nest abdominal
definition: Bilaterally-paired histoblast nest found in the epidermis of abdominal segments 1-7. This nest is found in an anterior dorsal position and contains approximately 15 cells.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001792
in subset: cur

Axiom
annotated source: anterior dorsal histoblast nest abdominal
annotated property: definition
annotated target: Bilaterally-paired histoblast nest found in the epidermis of abdominal segments 1-7. This nest is found in an anterior dorsal position and contains approximately 15 cells.
database_cross_reference: FlyBase:FBrf0064786

anterior dorsal histoblast nest abdominal 6
type: Class
equivalent class: Class
  intersection of: anterior dorsal histoblast nest abdominal
  intersection of: Restriction
    on property: part of
    some values from: abdominal segment 6
subclass of: anterior dorsal histoblast nest abdominal
subclass of: Restriction
  on property: part of
  some values from: larval abdominal segment 6
definition: Bilaterally-paired histoblast nest found in the epidermis of abdominal segment 6. This nest is found in an anterior dorsal position and contains approximately 15 cells.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001804
in subset: cur

Axiom
annotated source: anterior dorsal histoblast nest abdominal 6
annotated property: definition
annotated target: Bilaterally-paired histoblast nest found in the epidermis of abdominal segment 6. This nest is found in an anterior dorsal position and contains approximately 15 cells.
database_cross_reference: FlyBase:FBrf0064786

posterior dorsal histoblast nest abdominal
type: Class
subclass of: dorsal histoblast nest abdominal
definition: Bilaterally-paired histoblast nest found in the epidermis of abdominal segments 1-7. This nest is found in a posterior dorsal position and contains approximately 6 cells.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001809
in subset: cur

Axiom
annotated source: posterior dorsal histoblast nest abdominal
annotated property: definition
annotated target: Bilaterally-paired histoblast nest found in the epidermis of abdominal segments 1-7. This nest is found in a posterior dorsal position and contains approximately 6 cells.
database_cross_reference: FlyBase:FBrf0064786

posterior dorsal histoblast nest abdominal 6
type: Class
equivalent class: Class
  intersection of: posterior dorsal histoblast nest abdominal
  intersection of: Restriction
    on property: part of
    some values from: abdominal segment 6
subclass of: posterior dorsal histoblast nest abdominal
subclass of: Restriction
  on property: part of
  some values from: larval abdominal segment 6
definition: Bilaterally-paired histoblast nest found in the epidermis of abdominal segment 6. This nest is found in a posterior dorsal position and contains approximately 6 cells.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001815
in subset: cur

Axiom
annotated source: posterior dorsal histoblast nest abdominal 6
annotated property: definition
annotated target: Bilaterally-paired histoblast nest found in the epidermis of abdominal segment 6. This nest is found in a posterior dorsal position and contains approximately 6 cells.
database_cross_reference: FlyBase:FBrf0064786

imaginal ring
type: Class
subclass of: larval imaginal tissue
definition: A ring shaped structure in the larva that gives rise to part of the adult.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001834
in subset: cur

Axiom
annotated source: imaginal ring
annotated property: definition
annotated target: A ring shaped structure in the larva that gives rise to part of the adult.
database_cross_reference: FlyBase:FBrf0064792

salivary gland imaginal ring
type: Class
subclass of: imaginal ring
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval salivary gland
subclass of: Restriction
  on property: develops from
  some values from: embryonic primordium of adult salivary gland
definition: Ring of imaginal cells situated where the larval salivary glands join the salivary ducts, from which the adult salivary glands develop.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001835
in subset: cur

Axiom
annotated source: salivary gland imaginal ring
annotated property: definition
annotated target: Ring of imaginal cells situated where the larval salivary glands join the salivary ducts, from which the adult salivary glands develop.
database_cross_reference: FlyBase:FBrf0064786
database_cross_reference: FlyBase:FBrf0064792

larval hindgut imaginal ring
type: Class
subclass of: imaginal ring
subclass of: posterior ectoderm derivative
subclass of: gut section
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval hindgut
subclass of: Restriction
  on property: develops from
  some values from: embryonic precursor of adult hindgut
definition: Ring of imaginal tissue located at the anterior region of the embryonic/larval hindgut, posterior to where the Malpighian tubules join the hindgut, from which the adult hindgut forms. The hindgut imaginal ring cells are densely clustered, appear immature and have little cytoplasm (Murakami and Shiotsuki, 2001).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001840
in subset: cur

Axiom
annotated source: larval hindgut imaginal ring
annotated property: definition
annotated target: Ring of imaginal tissue located at the anterior region of the embryonic/larval hindgut, posterior to where the Malpighian tubules join the hindgut, from which the adult hindgut forms. The hindgut imaginal ring cells are densely clustered, appear immature and have little cytoplasm (Murakami and Shiotsuki, 2001).
database_cross_reference: FlyBase:FBrf0064792
database_cross_reference: FlyBase:FBrf0135849

anal imaginal ring
type: Class
subclass of: imaginal ring
subclass of: posterior ectoderm derivative
subclass of: gut section
subclass of: Restriction
  on property: part of
  some values from: larval abdominal segment 11
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval anus
subclass of: Restriction
  on property: develops from
  some values from: embryonic precursor of adult hindgut
definition: Imaginal tissue of the larva from which the adult anus develops.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001841
in subset: cur

Axiom
annotated source: anal imaginal ring
annotated property: definition
annotated target: Imaginal tissue of the larva from which the adult anus develops.
database_cross_reference: FlyBase:FBrf0064792

larval digestive system
type: Class
equivalent class: Class
  intersection of: digestive system
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: digestive system
subclass of: Restriction
  on property: part of
  some values from: larva
definition: Any digestive system of the larva.
has alternative id: FBbt:00005764
database_cross_reference: UBERON:6001842
has exact synonym: embryonic/larval digestive system
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001842
in subset: cur

Axiom
annotated source: larval digestive system
annotated property: definition
annotated target: Any digestive system of the larva.
database_cross_reference: FlyBase:FBrf0007733
database_cross_reference: FlyBase:FBrf0064792

embryonic/larval salivary gland
type: Class
subclass of: salivary gland
subclass of: Restriction
  on property: part of
  some values from: larval digestive system
subclass of: Restriction
  on property: develops from
  some values from: presumptive embryonic salivary gland
definition: Salivary gland of the embryo/larva.
has alternative id: FBbt:00005717
has exact synonym: larval salivary gland
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001878
in subset: cur

Axiom
annotated source: embryonic/larval salivary gland
annotated property: definition
annotated target: Salivary gland of the embryo/larva.
database_cross_reference: FBC:SPR

embryonic/larval salivary gland duct
type: Class
subclass of: ventral ectoderm derivative
subclass of: duct
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval salivary gland
subclass of: Restriction
  on property: develops from
  some values from: salivary gland duct primordium
definition: Y-shaped tube that carries the secretions from the salivary glands to the embryonic/larval mouth.
has alternative id: FBbt:00005774
has exact synonym: larval salivary gland duct
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001880
in subset: cur

Axiom
annotated source: embryonic/larval salivary gland duct
annotated property: definition
annotated target: Y-shaped tube that carries the secretions from the salivary glands to the embryonic/larval mouth.
database_cross_reference: FlyBase:FBrf0064792
database_cross_reference: FlyBase:FBrf0159337

embryonic/larval salivary gland common duct
type: Class
subclass of: ventral ectoderm derivative
subclass of: duct
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval salivary gland duct
subclass of: Restriction
  on property: develops from
  some values from: salivary gland common duct primordium
definition: Anterior length of the salivary gland duct. Anteriorly it connects to the atrium of the foregut. Posteriorly it bifurcates into the ducts of the individual salivary glands (Skaer, 1993).
has alternative id: FBbt:00005775
has exact synonym: larval salivary gland common duct
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001881
in subset: cur

Axiom
annotated source: embryonic/larval salivary gland common duct
annotated property: definition
annotated target: Anterior length of the salivary gland duct. Anteriorly it connects to the atrium of the foregut. Posteriorly it bifurcates into the ducts of the individual salivary glands (Skaer, 1993).
database_cross_reference: FlyBase:FBrf0064792

embryonic/larval hindgut
type: Class
subclass of: hindgut
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval gut
definition: Posterior part of the embryonic/larval alimentary canal, composed of pylorus (anterior), ileum and rectum (posterior) (Cohen et al., 2020).
has alternative id: FBbt:00005826
has exact synonym: hindintestine
has exact synonym: larval hindgut
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001891
in subset: cur

Axiom
annotated source: embryonic/larval hindgut
annotated property: definition
annotated target: Posterior part of the embryonic/larval alimentary canal, composed of pylorus (anterior), ileum and rectum (posterior) (Cohen et al., 2020).
database_cross_reference: FlyBase:FBrf0064792
database_cross_reference: FlyBase:FBrf0244771

Axiom
annotated source: embryonic/larval hindgut
annotated property: hasExactSynonym
annotated target: hindintestine
database_cross_reference: FlyBase:FBrf0007733

embryonic/larval rectum
type: Class
subclass of: rectum
subclass of: posterior ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval hindgut
subclass of: Restriction
  on property: develops from
  some values from: rectum primordium
definition: Posterior-most portion of the embryonic/larval alimentary canal, terminating in the anus.
has alternative id: FBbt:00005779
has exact synonym: larval rectum
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001892
in subset: cur

Axiom
annotated source: embryonic/larval rectum
annotated property: definition
annotated target: Posterior-most portion of the embryonic/larval alimentary canal, terminating in the anus.
database_cross_reference: FlyBase:FBrf0064792
database_cross_reference: FlyBase:FBrf0186027

embryonic/larval anus
type: Class
subclass of: anus
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval rectum
definition: Posterior opening of the embryonic/larval hindgut.
has exact synonym: larval anus
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001893
in subset: cur

Axiom
annotated source: embryonic/larval anus
annotated property: definition
annotated target: Posterior opening of the embryonic/larval hindgut.
database_cross_reference: FBC:SPR

embryonic/larval Malpighian tubule
type: Class
subclass of: Malpighian tubule
subclass of: Restriction
  on property: part of
  some values from: larval excretory system
subclass of: Restriction
  on property: continuous with
  some values from: embryonic/larval hindgut
subclass of: Restriction
  on property: develops from
  some values from: embryonic Malpighian tubule
definition: Malpighian tubule of the embryo/larva. The larval tubule is very similar to that of the adult, except that the initial segment of the anterior tubule is bigger in the larva.
has exact synonym: larval Malpighian tubule
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001896
in subset: cur

Axiom
annotated source: embryonic/larval Malpighian tubule
annotated property: definition
annotated target: Malpighian tubule of the embryo/larva. The larval tubule is very similar to that of the adult, except that the initial segment of the anterior tubule is bigger in the larva.
database_cross_reference: FlyBase:FBrf0222532

embryonic/larval specialized Malpighian tubule cell
type: Class
equivalent class: Class
  intersection of: specialized Malpighian tubule cell
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: specialized Malpighian tubule cell
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval Malpighian tubule
definition: Specialized cell of the embryonic/larval Malpighian tubules.
has exact synonym: embryonic/larval specialised Malpighian tubule cell
has exact synonym: larval specialized Malpighian tubule cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001904
in subset: cur

Axiom
annotated source: embryonic/larval specialized Malpighian tubule cell
annotated property: definition
annotated target: Specialized cell of the embryonic/larval Malpighian tubules.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

larval Malpighian tubule tip cell
type: Class
equivalent class: Class
  intersection of: Malpighian tubule tip cell
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: embryonic/larval specialized Malpighian tubule cell
subclass of: Malpighian tubule tip cell
definition: Tip cell of the embryonic/larval Malpighian tubule.
has exact synonym: embryonic/larval Malpighian tubule tip cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001905
in subset: cur

Axiom
annotated source: larval Malpighian tubule tip cell
annotated property: definition
annotated target: Tip cell of the embryonic/larval Malpighian tubule.
database_cross_reference: FlyBase:FBrf0223292

larval nervous system
type: Class
equivalent class: Class
  intersection of: nervous system
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: nervous system
subclass of: Restriction
  on property: part of
  some values from: larva
definition: Nervous system of the embryo/larva.
has alternative id: FBbt:00005719
database_cross_reference: UBERON:6001911
database_cross_reference: VFB:FBbt_00001911
has exact synonym: embryonic/larval nervous system
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001911
in subset: cur

Axiom
annotated source: larval nervous system
annotated property: definition
annotated target: Nervous system of the embryo/larva.
database_cross_reference: FlyBase:FBrf0045359
database_cross_reference: FlyBase:FBrf0075072
database_cross_reference: FlyBase:FBrf0105282

larval central nervous system
type: Class
equivalent class: Class
  intersection of: central nervous system
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: central nervous system
subclass of: Restriction
  on property: part of
  some values from: larval nervous system
definition: Central nervous system of the embryo/larva.
database_cross_reference: UBERON:6001919
database_cross_reference: VFB:FBbt_00001919
has exact synonym: embryonic/larval CNS
has exact synonym: embryonic/larval central nervous system
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001919
in subset: cur
in subset: larval OF

Axiom
annotated source: larval central nervous system
annotated property: definition
annotated target: Central nervous system of the embryo/larva.
database_cross_reference: FBC:SPR

larval brain
type: Class
equivalent class: Class
  intersection of: brain
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: supraesophageal ganglion
subclass of: brain
subclass of: anterior ectoderm derivative
subclass of: Class
  intersection of: Restriction
    on property: part of
    some values from: larval head
  intersection of: Restriction
    on property: part of
    some values from: larval central nervous system
subclass of: Restriction
  on property: develops from
  some values from: embryonic brain
definition: Supraesophageal ganglion of the late embryo or larva, consisting of the protocerebrum, deutocerebrum and tritocerebrum (Urbach and Technau, 2003; Li et al., 2014; Crews, 2019).
database_cross_reference: UBERON:6001920
database_cross_reference: VFB:FBbt_00001920
has exact synonym: embryonic/larval SPG
has exact synonym: embryonic/larval brain
has exact synonym: embryonic/larval supraesophageal complex
has exact synonym: embryonic/larval supraesophageal ganglion
has exact synonym: larval SPG
has exact synonym: larval cerebral ganglion
has exact synonym: larval supraesophageal ganglion
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001920
in subset: BrainName
in subset: cur
in subset: larval OF

Axiom
annotated source: larval brain
annotated property: definition
annotated target: Supraesophageal ganglion of the late embryo or larva, consisting of the protocerebrum, deutocerebrum and tritocerebrum (Urbach and Technau, 2003; Li et al., 2014; Crews, 2019).
database_cross_reference: FlyBase:FBrf0161020
database_cross_reference: FlyBase:FBrf0225812
database_cross_reference: FlyBase:FBrf0244240

Axiom
annotated source: larval brain
annotated property: hasExactSynonym
annotated target: embryonic/larval supraesophageal complex
database_cross_reference: FlyBase:FBrf0225812

supraesophageal nerve
type: Class
equivalent class: Class
  intersection of: nerve
  intersection of: Restriction
    on property: innervates
    some values from: supraesophageal ganglion
subclass of: nerve
subclass of: Restriction
  on property: innervates
  some values from: supraesophageal ganglion
definition: Nerve that innervates the supraesophageal ganglion.
database_cross_reference: VFB:FBbt_00001964
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001964
in subset: cur
in subset: larval OF

Axiom
annotated source: supraesophageal nerve
annotated property: definition
annotated target: Nerve that innervates the supraesophageal ganglion.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

subesophageal zone neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: subesophageal zone
subclass of: CNS neuron
subclass of: Restriction
  on property: has soma location
  some values from: subesophageal zone
definition: Any neuron (FBbt:00005106) that has its soma located in some subesophageal zone (FBbt:00051068).
database_cross_reference: VFB:FBbt_00001972
has exact synonym: SEZ neuron
has OBO namespace: fly_anatomy.ontology
has related synonym: SEG neuron
has related synonym: SOG neuron
has related synonym: subesophageal ganglion neuron
id: FBbt:00001972
in subset: cur

Axiom
annotated source: subesophageal zone neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that has its soma located in some subesophageal zone (FBbt:00051068).
database_cross_reference: FBC:Autogenerated

subesophageal nerve
type: Class
equivalent class: Class
  intersection of: nerve
  intersection of: Restriction
    on property: innervates
    some values from: gnathal ganglion
subclass of: nerve
subclass of: Restriction
  on property: innervates
  some values from: gnathal ganglion
definition: Nerve that innervates the subesophageal ganglion.
database_cross_reference: VFB:FBbt_00001976
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001976
in subset: cur

Axiom
annotated source: subesophageal nerve
annotated property: definition
annotated target: Nerve that innervates the subesophageal ganglion.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

thoracic neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: thoracic segment
subclass of: neuron
subclass of: Restriction
  on property: has soma location
  some values from: thoracic segment
definition: Any neuron (FBbt:00005106) that has its soma located in some thoracic segment (FBbt:00000016).
database_cross_reference: VFB:FBbt_00001983
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001983
in subset: cur

Axiom
annotated source: thoracic neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that has its soma located in some thoracic segment (FBbt:00000016).
database_cross_reference: FBC:Autogenerated

prothoracic neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: prothoracic segment
subclass of: thoracic neuron
subclass of: Restriction
  on property: has soma location
  some values from: prothoracic segment
definition: Any neuron (FBbt:00005106) that has its soma located in some prothoracic segment (FBbt:00000017).
database_cross_reference: VFB:FBbt_00001984
has exact synonym: thoracic T1 neuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001984
in subset: cur

Axiom
annotated source: prothoracic neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that has its soma located in some prothoracic segment (FBbt:00000017).
database_cross_reference: FBC:Autogenerated

mesothoracic neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: mesothoracic segment
subclass of: thoracic neuron
subclass of: Restriction
  on property: has soma location
  some values from: mesothoracic segment
definition: Any neuron (FBbt:00005106) that has its soma located in some mesothoracic segment (FBbt:00000018).
database_cross_reference: VFB:FBbt_00001985
has exact synonym: thoracic T2 neuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001985
in subset: cur

Axiom
annotated source: mesothoracic neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that has its soma located in some mesothoracic segment (FBbt:00000018).
database_cross_reference: FBC:Autogenerated

abdominal neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: abdomen
subclass of: neuron
subclass of: Restriction
  on property: has soma location
  some values from: abdomen
definition: Any neuron (FBbt:00005106) that has its soma located in some abdomen (FBbt:00000020).
database_cross_reference: VFB:FBbt_00001987
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001987
in subset: cur

Axiom
annotated source: abdominal neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that has its soma located in some abdomen (FBbt:00000020).
database_cross_reference: FBC:Autogenerated

larval abdominal 6 neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: larval abdominal segment 6
subclass of: larval neuron
subclass of: abdominal neuron
subclass of: Restriction
  on property: has soma location
  some values from: larval abdominal segment 6
definition: Any neuron (FBbt:00005106) that has its soma located in some larval abdominal segment 6 (FBbt:00001753).
database_cross_reference: VFB:FBbt_00001993
has exact synonym: larval A6 neuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00001993
in subset: cur

Axiom
annotated source: larval abdominal 6 neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that has its soma located in some larval abdominal segment 6 (FBbt:00001753).
database_cross_reference: FBC:Autogenerated

prothoracic nerve
type: Class
equivalent class: Class
  intersection of: nerve
  intersection of: Restriction
    on property: part of
    some values from: prothoracic segment
subclass of: nerve
subclass of: Restriction
  on property: part of
  some values from: prothoracic segment
definition: Any nerve (FBbt:00005105) that is part of some prothoracic segment (FBbt:00000017).
database_cross_reference: VFB:FBbt_00002063
has OBO namespace: fly_anatomy.ontology
id: FBbt:00002063
in subset: cur

Axiom
annotated source: prothoracic nerve
annotated property: definition
annotated target: Any nerve (FBbt:00005105) that is part of some prothoracic segment (FBbt:00000017).
database_cross_reference: FBC:Autogenerated

mesothoracic nerve
type: Class
equivalent class: Class
  intersection of: nerve
  intersection of: Restriction
    on property: part of
    some values from: mesothoracic segment
subclass of: nerve
subclass of: Restriction
  on property: part of
  some values from: mesothoracic segment
definition: Any nerve (FBbt:00005105) that is part of some mesothoracic segment (FBbt:00000018).
database_cross_reference: VFB:FBbt_00002103
has OBO namespace: fly_anatomy.ontology
id: FBbt:00002103
in subset: cur

Axiom
annotated source: mesothoracic nerve
annotated property: definition
annotated target: Any nerve (FBbt:00005105) that is part of some mesothoracic segment (FBbt:00000018).
database_cross_reference: FBC:Autogenerated

abdominal nerve
type: Class
equivalent class: Class
  intersection of: nerve
  intersection of: Restriction
    on property: part of
    some values from: abdomen
subclass of: nerve
subclass of: Restriction
  on property: part of
  some values from: abdomen
definition: Any nerve (FBbt:00005105) that is part of some abdomen (FBbt:00000020).
database_cross_reference: VFB:FBbt_00002179
has OBO namespace: fly_anatomy.ontology
id: FBbt:00002179
in subset: cur

Axiom
annotated source: abdominal nerve
annotated property: definition
annotated target: Any nerve (FBbt:00005105) that is part of some abdomen (FBbt:00000020).
database_cross_reference: FlyBase:FBrf0054490

larval sense organ
type: Class
equivalent class: Class
  intersection of: sense organ
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: sense organ
subclass of: Restriction
  on property: part of
  some values from: larva
definition: Any sense organ of the larva.
database_cross_reference: UBERON:6002639
database_cross_reference: VFB:FBbt_00002639
has exact synonym: embryonic/larval sense organ
has OBO namespace: fly_anatomy.ontology
id: FBbt:00002639
in subset: cur

Axiom
annotated source: larval sense organ
annotated property: definition
annotated target: Any sense organ of the larva.
database_cross_reference: FBC:Autogenerated

embryonic/larval prothoracic sensillum
type: Class
equivalent class: Class
  intersection of: larval sensillum
  intersection of: Restriction
    on property: part of
    some values from: prothoracic segment
subclass of: embryonic/larval thoracic sensillum
subclass of: Restriction
  on property: part of
  some values from: larval prothoracic segment
definition: Any larval sensillum (FBbt:00007240) that is part of some prothoracic segment (FBbt:00000017).
has exact synonym: larval prothoracic sensillum
has OBO namespace: fly_anatomy.ontology
id: FBbt:00002725
in subset: cur

Axiom
annotated source: embryonic/larval prothoracic sensillum
annotated property: definition
annotated target: Any larval sensillum (FBbt:00007240) that is part of some prothoracic segment (FBbt:00000017).
database_cross_reference: FBC:Autogenerated

larval mesothoracic sensillum
type: Class
equivalent class: Class
  intersection of: larval sensillum
  intersection of: Restriction
    on property: part of
    some values from: mesothoracic segment
subclass of: embryonic/larval thoracic sensillum
subclass of: Restriction
  on property: part of
  some values from: larval mesothoracic segment
definition: Any larval sensillum (FBbt:00007240) that is part of some mesothoracic segment (FBbt:00000018).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00002746
in subset: cur

Axiom
annotated source: larval mesothoracic sensillum
annotated property: definition
annotated target: Any larval sensillum (FBbt:00007240) that is part of some mesothoracic segment (FBbt:00000018).
database_cross_reference: FBC:Autogenerated

mesothoracic Keilin organ
type: Class
equivalent class: Class
  intersection of: Keilin organ
  intersection of: Restriction
    on property: part of
    some values from: larval mesothoracic segment
subclass of: larval mesothoracic sensillum
subclass of: Keilin organ
subclass of: Restriction
  on property: part of
  some values from: larval mesothoracic ventral sensory cluster
definition: Any Keilin organ (FBbt:00005198) that is part of some larval mesothoracic segment (FBbt:00001744).
has broad synonym: sh A
database_cross_reference: VFB:FBbt_00002761
has exact synonym: mesothoracic Keilin's organ
has OBO namespace: fly_anatomy.ontology
id: FBbt:00002761
in subset: cur

Axiom
annotated source: mesothoracic Keilin organ
annotated property: definition
annotated target: Any Keilin organ (FBbt:00005198) that is part of some larval mesothoracic segment (FBbt:00001744).
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: mesothoracic Keilin organ
annotated property: hasBroadSynonym
annotated target: sh A
database_cross_reference: FlyBase:FBrf0034076

larval abdominal sensillum
type: Class
equivalent class: Class
  intersection of: sensillum
  intersection of: Restriction
    on property: part of
    some values from: larval abdomen
subclass of: larval sensillum
subclass of: Restriction
  on property: part of
  some values from: larval abdomen
definition: Any sensillum (FBbt:00007152) that is part of some larval abdomen (FBbt:00001746).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00002782
in subset: cur

Axiom
annotated source: larval abdominal sensillum
annotated property: definition
annotated target: Any sensillum (FBbt:00007152) that is part of some larval abdomen (FBbt:00001746).
database_cross_reference: FBC:Autogenerated

embryonic/larval abdominal 11 sensillum
type: Class
equivalent class: Class
  intersection of: larval sensillum
  intersection of: Restriction
    on property: part of
    some values from: abdominal segment 11
subclass of: larval abdominal sensillum
subclass of: Restriction
  on property: part of
  some values from: larval abdominal segment 11
definition: Any larval sensillum (FBbt:00007240) that is part of some abdominal segment 11 (FBbt:00000032).
has exact synonym: larval abdominal 11 sensillum
has OBO namespace: fly_anatomy.ontology
id: FBbt:00002950
in subset: cur

Axiom
annotated source: embryonic/larval abdominal 11 sensillum
annotated property: definition
annotated target: Any larval sensillum (FBbt:00007240) that is part of some abdominal segment 11 (FBbt:00000032).
database_cross_reference: FBC:Autogenerated

prepupa
type: Class
subclass of: organism
subclass of: Restriction
  on property: develops from
  some values from: larva
definition: The prepupa is the name given to the organism at the period of the life cycle that begins at puparium formation and ends when larval/pupal apolysis is complete, as indicated by the completion of imaginal head sac eversion and the expulsion of the oral armature of the larva. Duration at 25 degrees C is approximately 12 hours. It occurs 120-132.2 hours after egg laying, and is the period of 0-12.2 hours after puparium formation.
database_cross_reference: UBERON:0003142
has OBO namespace: fly_anatomy.ontology
has related synonym: PP
id: FBbt:00002952
in subset: FB gloss
in subset: cur

Axiom
annotated source: prepupa
annotated property: definition
annotated target: The prepupa is the name given to the organism at the period of the life cycle that begins at puparium formation and ends when larval/pupal apolysis is complete, as indicated by the completion of imaginal head sac eversion and the expulsion of the oral armature of the larva. Duration at 25 degrees C is approximately 12 hours. It occurs 120-132.2 hours after egg laying, and is the period of 0-12.2 hours after puparium formation.
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

pupa
type: Class
subclass of: organism
subclass of: Restriction
  on property: develops from
  some values from: prepupa
definition: The pupa is the name given to the organism at the period of the life cycle that begins once larval/pupal apolysis is complete, as indicated by the expulsion of the larval armature. Early in this stage the legs and wings reach full extension along the abdomen. The stage ends when the pupal cuticle separates from the underlying epidermis (pupal/adult apolysis), and the eye cup becomes yellow at its periphery. The duration of this stage is approximately 32 hours at 25 degrees C, and spans from 132.2-164.3 hours after egg laying, or is the period of 12.2-44.3 hours after puparium formation.
database_cross_reference: UBERON:0003143
has OBO namespace: fly_anatomy.ontology
has related synonym: P
id: FBbt:00002953
in subset: FB gloss
in subset: cur

Axiom
annotated source: pupa
annotated property: definition
annotated target: The pupa is the name given to the organism at the period of the life cycle that begins once larval/pupal apolysis is complete, as indicated by the expulsion of the larval armature. Early in this stage the legs and wings reach full extension along the abdomen. The stage ends when the pupal cuticle separates from the underlying epidermis (pupal/adult apolysis), and the eye cup becomes yellow at its periphery. The duration of this stage is approximately 32 hours at 25 degrees C, and spans from 132.2-164.3 hours after egg laying, or is the period of 12.2-44.3 hours after puparium formation.
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

adult
type: Class
subclass of: organism
subclass of: Restriction
  on property: develops from
  some values from: pharate adult
definition: Organism at any stage after completing eclosion.
database_cross_reference: UBERON:0007023
has OBO namespace: fly_anatomy.ontology
has related synonym: imago
id: FBbt:00003004
in subset: FB gloss
in subset: cur

Axiom
annotated source: adult
annotated property: definition
annotated target: Organism at any stage after completing eclosion.
database_cross_reference: FlyBase:FBrf0036849

adult tagma
type: Class
equivalent class: Class
  intersection of: tagma
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: tagma
subclass of: Restriction
  on property: part of
  some values from: adult
definition: Any tagma of the adult.
database_cross_reference: UBERON:6003005
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003005
in subset: cur

Axiom
annotated source: adult tagma
annotated property: definition
annotated target: Any tagma of the adult.
database_cross_reference: FBC:Autogenerated

adult segment
type: Class
equivalent class: Class
  intersection of: segment
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: segment
subclass of: Restriction
  on property: part of
  some values from: adult
definition: Segment of the adult.
database_cross_reference: UBERON:6003006
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003006
in subset: cur

Axiom
annotated source: adult segment
annotated property: definition
annotated target: Segment of the adult.
database_cross_reference: FBC:SPR

adult head
type: Class
equivalent class: Class
  intersection of: head
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: head
subclass of: adult tagma
definition: Head of the adult organism.
database_cross_reference: UBERON:6003007
database_cross_reference: https://www.ento.csiro.au/biology/drosophila/melanogaster.html
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003007
in subset: cur

Axiom
annotated source: adult head
annotated property: definition
annotated target: Head of the adult organism.
database_cross_reference: FBC:SPR

adult head segment
type: Class
equivalent class: Class
  intersection of: head segment
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: head segment
subclass of: adult segment
subclass of: Restriction
  on property: part of
  some values from: adult head
definition: Segment of the adult head.
database_cross_reference: UBERON:6003009
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003009
in subset: cur

Axiom
annotated source: adult head segment
annotated property: definition
annotated target: Segment of the adult head.
database_cross_reference: FlyBase:FBrf0064788

adult gnathal segment
type: Class
equivalent class: Class
  intersection of: gnathal segment
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: gnathal segment
subclass of: adult head segment
definition: Any gnathal segment of the adult.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003014
in subset: cur

Axiom
annotated source: adult gnathal segment
annotated property: definition
annotated target: Any gnathal segment of the adult.
database_cross_reference: FBC:Autogenerated

adult thorax
type: Class
equivalent class: Class
  intersection of: thorax
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: thorax
subclass of: adult tagma
subclass of: Restriction
  on property: part of
  some values from: adult postcephalic region
definition: Thorax of the adult.
database_cross_reference: UBERON:6003018
database_cross_reference: https://www.ento.csiro.au/biology/drosophila/melanogaster.html
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003018
in subset: cur

Axiom
annotated source: adult thorax
annotated property: definition
annotated target: Thorax of the adult.
database_cross_reference: FlyBase:FBim0000792

adult thoracic segment
type: Class
equivalent class: Class
  intersection of: thoracic segment
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: thoracic segment
subclass of: adult segment
subclass of: Restriction
  on property: part of
  some values from: adult thorax
definition: Any thoracic segment of the adult.
database_cross_reference: UBERON:6003019
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003019
in subset: cur

Axiom
annotated source: adult thoracic segment
annotated property: definition
annotated target: Any thoracic segment of the adult.
database_cross_reference: FBC:Autogenerated

adult prothoracic segment
type: Class
equivalent class: Class
  intersection of: prothoracic segment
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: prothoracic segment
subclass of: adult thoracic segment
definition: Any prothoracic segment of the adult.
database_cross_reference: UBERON:6003020
has exact synonym: prothorax
has exact synonym: t1
has exact synonym: thoracic segment 1
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003020
in subset: cur

Axiom
annotated source: adult prothoracic segment
annotated property: definition
annotated target: Any prothoracic segment of the adult.
database_cross_reference: FBC:Autogenerated

adult mesothoracic segment
type: Class
equivalent class: Class
  intersection of: mesothoracic segment
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: mesothoracic segment
subclass of: adult thoracic segment
definition: Any mesothoracic segment of the adult.
database_cross_reference: UBERON:6003021
has exact synonym: mesothorax
has exact synonym: t2
has exact synonym: thoracic segment 2
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003021
in subset: cur

Axiom
annotated source: adult mesothoracic segment
annotated property: definition
annotated target: Any mesothoracic segment of the adult.
database_cross_reference: FBC:Autogenerated

adult abdomen
type: Class
equivalent class: Class
  intersection of: abdomen
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: abdomen
subclass of: adult tagma
subclass of: Restriction
  on property: part of
  some values from: adult postcephalic region
definition: Abdomen of the adult.
database_cross_reference: UBERON:6003023
database_cross_reference: https://www.ento.csiro.au/biology/drosophila/melanogaster.html
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003023
in subset: cur

Axiom
annotated source: adult abdomen
annotated property: definition
annotated target: Abdomen of the adult.
database_cross_reference: FlyBase:FBim0000809
database_cross_reference: FlyBase:FBim0000810

adult abdominal segment
type: Class
equivalent class: Class
  intersection of: abdominal segment
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: abdominal segment
subclass of: adult segment
subclass of: Restriction
  on property: part of
  some values from: adult abdomen
definition: Any abdominal segment of the adult.
database_cross_reference: UBERON:6003024
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003024
in subset: cur

Axiom
annotated source: adult abdominal segment
annotated property: definition
annotated target: Any abdominal segment of the adult.
database_cross_reference: FBC:Autogenerated

adult abdominal segment 6
type: Class
equivalent class: Class
  intersection of: abdominal segment 6
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: abdominal segment 6
subclass of: adult anterior abdominal segment
definition: Any abdominal segment 6 of the adult.
has OBO namespace: fly_anatomy.ontology
has related synonym: a6
id: FBbt:00003030
in subset: cur

Axiom
annotated source: adult abdominal segment 6
annotated property: definition
annotated target: Any abdominal segment 6 of the adult.
database_cross_reference: FBC:Autogenerated

adult abdominal segment 11
type: Class
equivalent class: Class
  intersection of: abdominal segment 11
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: abdominal segment 11
subclass of: adult terminal segment
subclass of: Restriction
  on property: part of
  some values from: adult telson
definition: Any abdominal segment 11 of the adult.
has OBO namespace: fly_anatomy.ontology
has related synonym: a11
id: FBbt:00003035
in subset: cur

Axiom
annotated source: adult abdominal segment 11
annotated property: definition
annotated target: Any abdominal segment 11 of the adult.
database_cross_reference: FBC:Autogenerated

adult telson
type: Class
equivalent class: Class
  intersection of: telson
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: telson
subclass of: Restriction
  on property: part of
  some values from: adult abdomen
definition: Any telson of the adult.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003036
in subset: cur

Axiom
annotated source: adult telson
annotated property: definition
annotated target: Any telson of the adult.
database_cross_reference: FBC:Autogenerated

adult tracheal system
type: Class
equivalent class: Class
  intersection of: tracheal system
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: tracheal system
subclass of: Restriction
  on property: part of
  some values from: adult
definition: Tracheal system of the adult. It retains the same basic pattern of the larval tracheal system, except for the presence of air sacs and the disappearance of the last tracheal segment. It is composed of nine tracheal metameres.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003037
in subset: cur

Axiom
annotated source: adult tracheal system
annotated property: definition
annotated target: Tracheal system of the adult. It retains the same basic pattern of the larval tracheal system, except for the presence of air sacs and the disappearance of the last tracheal segment. It is composed of nine tracheal metameres.
database_cross_reference: FlyBase:FBim0000051
database_cross_reference: FlyBase:FBim0000052
database_cross_reference: FlyBase:FBim0000053
database_cross_reference: FlyBase:FBrf0034081
database_cross_reference: FlyBase:FBrf0064787

adult digestive system
type: Class
equivalent class: Class
  intersection of: digestive system
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: digestive system
subclass of: Restriction
  on property: part of
  some values from: adult
definition: Digestive system of the adult, comprising the alimentary canal, mouthparts, labellar glands, salivary glands and Malpighian tubules (Miller, 1950). The adult alimentary canal and salivary glands arise anew from precursors during metamorphosis (Bodenstein, 1950). The adult Malpighian tubules are remodelled from those of the larva (Bodenstein, 1950).
has OBO namespace: fly_anatomy.ontology
has related synonym: pupal/adult digestive system
id: FBbt:00003123
in subset: cur

Axiom
annotated source: adult digestive system
annotated property: definition
annotated target: Digestive system of the adult, comprising the alimentary canal, mouthparts, labellar glands, salivary glands and Malpighian tubules (Miller, 1950). The adult alimentary canal and salivary glands arise anew from precursors during metamorphosis (Bodenstein, 1950). The adult Malpighian tubules are remodelled from those of the larva (Bodenstein, 1950).
database_cross_reference: FlyBase:FBrf0007733
database_cross_reference: FlyBase:FBrf0007735

alimentary canal
type: Class
subclass of: multi-tissue structure
subclass of: Restriction
  on property: part of
  some values from: digestive system
definition: The entire anatomical structure through which food and its digestion products are ingested, digested and excreted. At its anterior and posterior ends this includes structures that are not foregut or hindgut.
database_cross_reference: UBERON:0001555
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003125
in subset: cur

Axiom
annotated source: alimentary canal
annotated property: definition
annotated target: The entire anatomical structure through which food and its digestion products are ingested, digested and excreted. At its anterior and posterior ends this includes structures that are not foregut or hindgut.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

adult salivary gland
type: Class
subclass of: salivary gland
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: adult digestive system
subclass of: Restriction
  on property: develops from
  some values from: salivary gland imaginal ring
definition: The salivary gland of the adult. It consists of two slender long, unbranched epithelial tubes of secretory epithelium that taper to form narrow ducts at their anterior end, which join to an unpaired duct (FBbt:00003137) in the neck region. The common duct connects to the salivary canal which runs through the hypopharynx and opens at its tip into the labial groove. The posterior ends of the lobes of the gland extend straight through the thorax on either side of the ventriculus and end in compact blind coils in the base of the abdomen. A suspensory muscle (FBbt:00003542) is attached to the anterior end of each lobe, near the cardia. (Miller, 1950 pg 440-1, 451).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003135
in subset: cur

Axiom
annotated source: adult salivary gland
annotated property: definition
annotated target: The salivary gland of the adult. It consists of two slender long, unbranched epithelial tubes of secretory epithelium that taper to form narrow ducts at their anterior end, which join to an unpaired duct (FBbt:00003137) in the neck region. The common duct connects to the salivary canal which runs through the hypopharynx and opens at its tip into the labial groove. The posterior ends of the lobes of the gland extend straight through the thorax on either side of the ventriculus and end in compact blind coils in the base of the abdomen. A suspensory muscle (FBbt:00003542) is attached to the anterior end of each lobe, near the cardia. (Miller, 1950 pg 440-1, 451).
database_cross_reference: FlyBase:FBrf0007735

adult hindgut
type: Class
subclass of: hindgut
subclass of: posterior ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: adult gut
subclass of: Restriction
  on property: develops from
  some values from: larval hindgut imaginal ring
definition: Posterior part of the of the adult alimentary canal, extending from the posterior end of the midgut, where the Malpighian tubules meet, to the rectum, including the rectal pouch and rectal papillae (Miller, 1950; Skaer, 1993; Demerec, 1994). It has a characteristic loop morphology that forms independently of the rotation of the genitalia (Gonzalez-Morales et al., 2015).
has broad synonym: adult intestine
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003143
in subset: cur

Axiom
annotated source: adult hindgut
annotated property: definition
annotated target: Posterior part of the of the adult alimentary canal, extending from the posterior end of the midgut, where the Malpighian tubules meet, to the rectum, including the rectal pouch and rectal papillae (Miller, 1950; Skaer, 1993; Demerec, 1994). It has a characteristic loop morphology that forms independently of the rotation of the genitalia (Gonzalez-Morales et al., 2015).
database_cross_reference: FlyBase:FBrf0007735
database_cross_reference: FlyBase:FBrf0064792
database_cross_reference: FlyBase:FBrf0075527
database_cross_reference: FlyBase:FBrf0228784

Axiom
annotated source: adult hindgut
annotated property: hasBroadSynonym
annotated target: adult intestine
database_cross_reference: FlyBase:FBrf0007735

adult posterior hindgut
type: Class
subclass of: rectum
subclass of: Restriction
  on property: part of
  some values from: adult hindgut
definition: Posterior-most region of the adult hindgut. It consists of a broadly expanded rectal sac (rectal ampulla) that tapers posteriorly to the narrow rectum proper, terminating at the anus. Protruding from the walls into the lumen of the rectal sac are two pairs of conical rectal papillae.
has exact synonym: adult rectum
has exact synonym: posterior intestine
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003144
in subset: cur

Axiom
annotated source: adult posterior hindgut
annotated property: definition
annotated target: Posterior-most region of the adult hindgut. It consists of a broadly expanded rectal sac (rectal ampulla) that tapers posteriorly to the narrow rectum proper, terminating at the anus. Protruding from the walls into the lumen of the rectal sac are two pairs of conical rectal papillae.
database_cross_reference: FlyBase:FBrf0007735

Axiom
annotated source: adult posterior hindgut
annotated property: hasExactSynonym
annotated target: adult rectum
database_cross_reference: FlyBase:FBrf0007735

Axiom
annotated source: adult posterior hindgut
annotated property: hasExactSynonym
annotated target: posterior intestine
database_cross_reference: FlyBase:FBrf0007735

adult circulatory system
type: Class
equivalent class: Class
  intersection of: circulatory system
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: circulatory system
subclass of: Restriction
  on property: part of
  some values from: adult
definition: Circulatory system of the adult.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003149
in subset: cur

Axiom
annotated source: adult circulatory system
annotated property: definition
annotated target: Circulatory system of the adult.
database_cross_reference: FlyBase:FBrf0007735
database_cross_reference: FlyBase:FBrf0031012

adult dorsal vessel
type: Class
equivalent class: Class
  intersection of: dorsal vessel
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: dorsal vessel
subclass of: Restriction
  on property: part of
  some values from: adult circulatory system
definition: Dorsal vessel of the adult. It extends from the sixth abdominal segment to the dorsal anterior region of the brain (Curtis et al., 1999). The anterior portion, which is devoid of ostia, is the aorta, whilst the posterior (caudal) region, which has ostia, forms the heart proper.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003152
in subset: cur

Axiom
annotated source: adult dorsal vessel
annotated property: definition
annotated target: Dorsal vessel of the adult. It extends from the sixth abdominal segment to the dorsal anterior region of the brain (Curtis et al., 1999). The anterior portion, which is devoid of ostia, is the aorta, whilst the posterior (caudal) region, which has ostia, forms the heart proper.
database_cross_reference: FlyBase:FBrf0108687

adult heart
type: Class
subclass of: multi-tissue structure
subclass of: Restriction
  on property: part of
  some values from: adult dorsal vessel
subclass of: Restriction
  on property: continuous with
  some values from: abdominal tergite 6
subclass of: Restriction
  on property: continuous with
  some values from: adult rectal sac
definition: The caudal, pulsatile region of the adult dorsal vessel. It extends from the first to the sixth abdominal segment, lying just below the surface of the cuticle, and has four pairs of ostia (Curtis et al., 1999). It is supported along the midline of the body by a series of paired alary muscles, suspensory fibrils and a rudimentary dorsal diaphragm (Miller, 1950). The caudal end is closed and is attached to the 6th abdominal tergite and to the dorsal wall of the rectal sac. The wall of the heart consists of a single muscular layer containing circular striated fibers and scattered lateral nuclei. On the ventral side, an outer layer or longitudinal muscles extends the whole length except for the caudal end.
database_cross_reference: UBERON:0015230
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003154
in subset: cur

Axiom
annotated source: adult heart
annotated property: definition
annotated target: The caudal, pulsatile region of the adult dorsal vessel. It extends from the first to the sixth abdominal segment, lying just below the surface of the cuticle, and has four pairs of ostia (Curtis et al., 1999). It is supported along the midline of the body by a series of paired alary muscles, suspensory fibrils and a rudimentary dorsal diaphragm (Miller, 1950). The caudal end is closed and is attached to the 6th abdominal tergite and to the dorsal wall of the rectal sac. The wall of the heart consists of a single muscular layer containing circular striated fibers and scattered lateral nuclei. On the ventral side, an outer layer or longitudinal muscles extends the whole length except for the caudal end.
database_cross_reference: FlyBase:FBrf0007735
database_cross_reference: FlyBase:FBrf0108687

adult adipose system
type: Class
equivalent class: Class
  intersection of: adipose system
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: adipose system
subclass of: Restriction
  on property: part of
  some values from: adult
definition: Adipose system of the adult.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003208
in subset: cur

Axiom
annotated source: adult adipose system
annotated property: definition
annotated target: Adipose system of the adult.
database_cross_reference: FBC:SPR

adult fat body
type: Class
equivalent class: Class
  intersection of: fat body
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: fat body
subclass of: Restriction
  on property: part of
  some values from: adult adipose system
definition: Fat body of the adult. It is composed of diploid cells derived from cell clusters in the larval body wall and from adepithelial cells of the imaginal discs (Hoshizaki et al., 1995; Musselman and Kuhnlein, 2018). It is composed of various unconnected adipose tissue depots throughout the body (Musselman and Kuhnlein, 2018).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003209
in subset: cur

Axiom
annotated source: adult fat body
annotated property: definition
annotated target: Fat body of the adult. It is composed of diploid cells derived from cell clusters in the larval body wall and from adepithelial cells of the imaginal discs (Hoshizaki et al., 1995; Musselman and Kuhnlein, 2018). It is composed of various unconnected adipose tissue depots throughout the body (Musselman and Kuhnlein, 2018).
database_cross_reference: FlyBase:FBrf0064793
database_cross_reference: FlyBase:FBrf0083200
database_cross_reference: FlyBase:FBrf0238315

adult endocrine system
type: Class
equivalent class: Class
  intersection of: endocrine system
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: endocrine system
subclass of: Restriction
  on property: part of
  some values from: adult
definition: Endocrine system of the adult.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003214
in subset: cur

Axiom
annotated source: adult endocrine system
annotated property: definition
annotated target: Endocrine system of the adult.
database_cross_reference: FBC:SPR

adult muscle system
type: Class
equivalent class: Class
  intersection of: muscle system
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: muscle system
subclass of: Restriction
  on property: part of
  some values from: adult
definition: Muscle system of the adult.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003218
in subset: cur

Axiom
annotated source: adult muscle system
annotated property: definition
annotated target: Muscle system of the adult.
database_cross_reference: FlyBase:FBrf0007735

adepithelial cell
type: Class
subclass of: embryonic precursor cell of adult muscle
subclass of: Restriction
  on property: continuous with
  some values from: imaginal disc
definition: Small, spindle-shaped adult muscle precursor cell that is distinct from, but closely apposed to, the surface of an imaginal disc epithelium.
database_cross_reference: CL:0000462
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003219
in subset: cur

Axiom
annotated source: adepithelial cell
annotated property: definition
annotated target: Small, spindle-shaped adult muscle precursor cell that is distinct from, but closely apposed to, the surface of an imaginal disc epithelium.
database_cross_reference: FlyBase:FBrf0064793

adepithelial cell of dorsal prothoracic disc
type: Class
equivalent class: Class
  intersection of: adepithelial cell
  intersection of: Restriction
    on property: continuous with
    some values from: humeral disc
subclass of: adepithelial cell
subclass of: thoracic adult muscle precursor cell
subclass of: Restriction
  on property: part of
  some values from: larval prothoracic segment
subclass of: Restriction
  on property: continuous with
  some values from: humeral disc
definition: Any adepithelial cell (FBbt:00003219) that is connected to some humeral disc (FBbt:00001777).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003223
in subset: cur

Axiom
annotated source: adepithelial cell of dorsal prothoracic disc
annotated property: definition
annotated target: Any adepithelial cell (FBbt:00003219) that is connected to some humeral disc (FBbt:00001777).
database_cross_reference: FBC:Autogenerated

adepithelial cell of prothoracic leg disc
type: Class
equivalent class: Class
  intersection of: adepithelial cell of leg disc
  intersection of: Restriction
    on property: part of
    some values from: prothoracic segment
subclass of: adepithelial cell of leg disc
subclass of: Restriction
  on property: part of
  some values from: larval prothoracic segment
subclass of: Restriction
  on property: continuous with
  some values from: prothoracic leg disc
definition: Adepithelial cell associated with the prothoracic leg imaginal disc.
has alternative id: FBbt:00100791
has exact synonym: adepithelial cell of ventral prothoracic disc
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003224
in subset: cur

Axiom
annotated source: adepithelial cell of prothoracic leg disc
annotated property: definition
annotated target: Adepithelial cell associated with the prothoracic leg imaginal disc.
database_cross_reference: FlyBase:FBrf0093123

adepithelial cell of wing disc
type: Class
equivalent class: Class
  intersection of: adepithelial cell
  intersection of: Restriction
    on property: continuous with
    some values from: wing disc
subclass of: adepithelial cell
subclass of: thoracic adult muscle precursor cell
subclass of: Restriction
  on property: part of
  some values from: larval mesothoracic segment
subclass of: Restriction
  on property: continuous with
  some values from: wing disc
definition: Adepithelial cell associated with the wing imaginal disc. There are approximately 10 of these cells per wing disc at the end of embryogenesis; they proliferate throughout the larval stages to reach up to 2,500 cells by the late third instar larval stage. They give rise to the direct and indirect flight muscles of the adult (Gunage et al., 2014).
has alternative id: FBbt:00100786
has exact synonym: adepithelial cell of dorsal mesothoracic disc
has exact synonym: adult flight muscle precursor cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003225
in subset: cur

Axiom
annotated source: adepithelial cell of wing disc
annotated property: definition
annotated target: Adepithelial cell associated with the wing imaginal disc. There are approximately 10 of these cells per wing disc at the end of embryogenesis; they proliferate throughout the larval stages to reach up to 2,500 cells by the late third instar larval stage. They give rise to the direct and indirect flight muscles of the adult (Gunage et al., 2014).
database_cross_reference: FlyBase:FBrf0093123
database_cross_reference: FlyBase:FBrf0226374

Axiom
annotated source: adepithelial cell of wing disc
annotated property: hasExactSynonym
annotated target: adult flight muscle precursor cell
database_cross_reference: FlyBase:FBrf0226374

adepithelial cell of mesothoracic leg disc
type: Class
equivalent class: Class
  intersection of: adepithelial cell of leg disc
  intersection of: Restriction
    on property: part of
    some values from: mesothoracic segment
subclass of: adepithelial cell of leg disc
subclass of: Restriction
  on property: part of
  some values from: larval mesothoracic segment
subclass of: Restriction
  on property: continuous with
  some values from: mesothoracic leg disc
definition: Adepithelial cell associated with the mesothoracic leg imaginal disc.
has alternative id: FBbt:00100789
has exact synonym: adepithelial cell of ventral mesothoracic disc
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003226
in subset: cur

Axiom
annotated source: adepithelial cell of mesothoracic leg disc
annotated property: definition
annotated target: Adepithelial cell associated with the mesothoracic leg imaginal disc.
database_cross_reference: FlyBase:FBrf0093123

embryonic precursor cell of adult muscle
type: Class
subclass of: myoblast
subclass of: trunk mesoderm derivative
subclass of: Restriction
  on property: develops from
  some values from: embryonic primordium of adult muscle precursor
definition: Cell persisting from the embryonic stage that contributes to the adult musculature. During metamorphosis, myoblasts aggregate and fuse together to form the adult muscle either on the remnants of larval muscles or independently on the newly forming adult epidermis (Bate, 1993).
has exact synonym: adult muscle precursor cell
has exact synonym: adult myoblast
has OBO namespace: fly_anatomy.ontology
has related synonym: AMP
has related synonym: P1 AdMus
id: FBbt:00003232
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic precursor cell of adult muscle
annotated property: definition
annotated target: Cell persisting from the embryonic stage that contributes to the adult musculature. During metamorphosis, myoblasts aggregate and fuse together to form the adult muscle either on the remnants of larval muscles or independently on the newly forming adult epidermis (Bate, 1993).
database_cross_reference: FlyBase:FBrf0053819
database_cross_reference: FlyBase:FBrf0064793

Axiom
annotated source: embryonic precursor cell of adult muscle
annotated property: hasExactSynonym
annotated target: adult myoblast
database_cross_reference: FlyBase:FBrf0064793

Axiom
annotated source: embryonic precursor cell of adult muscle
annotated property: hasRelatedSynonym
annotated target: P1 AdMus
database_cross_reference: https://orcid.org/0000-0002-7073-9172

thoracic adult muscle precursor cell
type: Class
equivalent class: Class
  intersection of: embryonic precursor cell of adult muscle
  intersection of: Restriction
    on property: part of
    some values from: thoracic segment
subclass of: embryonic precursor cell of adult muscle
subclass of: Restriction
  on property: part of
  some values from: thoracic segment
definition: Any embryonic precursor cell of adult muscle (FBbt:00003232) that is part of some thoracic segment (FBbt:00000016).
has exact synonym: adult thoracic myoblast
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003233
in subset: cur

Axiom
annotated source: thoracic adult muscle precursor cell
annotated property: definition
annotated target: Any embryonic precursor cell of adult muscle (FBbt:00003232) that is part of some thoracic segment (FBbt:00000016).
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: thoracic adult muscle precursor cell
annotated property: hasExactSynonym
annotated target: adult thoracic myoblast
database_cross_reference: FlyBase:FBrf0064793

abdominal adult muscle precursor cell
type: Class
equivalent class: Class
  intersection of: embryonic precursor cell of adult muscle
  intersection of: Restriction
    on property: part of
    some values from: abdominal segment
subclass of: embryonic precursor cell of adult muscle
subclass of: Restriction
  on property: part of
  some values from: abdominal segment
definition: An adult muscle precursor cell found in an abdominal segment. In each of embryonic segments A1-7, there are four main clusters of these cells (dorsal, dorso-lateral, lateral and ventral) (Bate, et al., 1991) that are associated with peripheral nerves (Bate, 1993) and, during late embryogenesis, are connected to each other by a network of fine filopodia (Figeac et al., 2010). During metamorphosis, they migrate along the nerves to the sites of muscle formation at the epidermal histoblast nests (Bate, 1993).
has exact synonym: adult abdominal myoblast
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003234
in subset: cur

Axiom
annotated source: abdominal adult muscle precursor cell
annotated property: definition
annotated target: An adult muscle precursor cell found in an abdominal segment. In each of embryonic segments A1-7, there are four main clusters of these cells (dorsal, dorso-lateral, lateral and ventral) (Bate, et al., 1991) that are associated with peripheral nerves (Bate, 1993) and, during late embryogenesis, are connected to each other by a network of fine filopodia (Figeac et al., 2010). During metamorphosis, they migrate along the nerves to the sites of muscle formation at the epidermal histoblast nests (Bate, 1993).
database_cross_reference: FlyBase:FBrf0053819
database_cross_reference: FlyBase:FBrf0064793
database_cross_reference: FlyBase:FBrf0210887

Axiom
annotated source: abdominal adult muscle precursor cell
annotated property: hasExactSynonym
annotated target: adult abdominal myoblast
database_cross_reference: FlyBase:FBrf0064793

adult somatic muscle cell
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: adult somatic muscle
subclass of: somatic muscle cell
subclass of: adult muscle cell
subclass of: Restriction
  on property: part of
  some values from: adult somatic muscle
definition: Any muscle cell (FBbt:00005074) that is part of some adult somatic muscle (FBbt:00058784).
database_cross_reference: UBERON:6003259
has exact synonym: adult skeletal muscle cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003259
in subset: cur

Axiom
annotated source: adult somatic muscle cell
annotated property: definition
annotated target: Any muscle cell (FBbt:00005074) that is part of some adult somatic muscle (FBbt:00058784).
database_cross_reference: FBC:Autogenerated

adult somatic muscle cell of head
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: adult somatic muscle of head
subclass of: adult somatic muscle cell
subclass of: Restriction
  on property: part of
  some values from: adult somatic muscle of head
definition: Any muscle cell (FBbt:00005074) that is part of some adult somatic muscle of head (FBbt:00058785).
has exact synonym: skeletal muscle cell of head
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003260
in subset: cur

Axiom
annotated source: adult somatic muscle cell of head
annotated property: definition
annotated target: Any muscle cell (FBbt:00005074) that is part of some adult somatic muscle of head (FBbt:00058785).
database_cross_reference: FBC:Autogenerated

adult somatic muscle cell of thorax
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: adult somatic muscle of thorax
subclass of: adult somatic muscle cell
subclass of: Restriction
  on property: part of
  some values from: adult somatic muscle of thorax
definition: Any muscle cell (FBbt:00005074) that is part of some adult somatic muscle of thorax (FBbt:00058828).
has exact synonym: skeletal muscle cell of thorax
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003305
in subset: cur

Axiom
annotated source: adult somatic muscle cell of thorax
annotated property: definition
annotated target: Any muscle cell (FBbt:00005074) that is part of some adult somatic muscle of thorax (FBbt:00058828).
database_cross_reference: FBC:Autogenerated

somatic muscle cell of prothorax
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: somatic muscle of prothorax
subclass of: adult somatic muscle cell of thorax
subclass of: Restriction
  on property: part of
  some values from: somatic muscle of prothorax
definition: Any muscle cell (FBbt:00005074) that is part of some somatic muscle of prothorax (FBbt:00058856).
has exact synonym: skeletal muscle cell of prothorax
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003334
in subset: cur

Axiom
annotated source: somatic muscle cell of prothorax
annotated property: definition
annotated target: Any muscle cell (FBbt:00005074) that is part of some somatic muscle of prothorax (FBbt:00058856).
database_cross_reference: FBC:Autogenerated

somatic muscle cell of mesothorax
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: somatic muscle of mesothorax
subclass of: adult somatic muscle cell of thorax
subclass of: Restriction
  on property: part of
  some values from: somatic muscle of mesothorax
definition: Any muscle cell (FBbt:00005074) that is part of some somatic muscle of mesothorax (FBbt:00058880).
has exact synonym: skeletal muscle cell of mesothorax
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003359
in subset: cur

Axiom
annotated source: somatic muscle cell of mesothorax
annotated property: definition
annotated target: Any muscle cell (FBbt:00005074) that is part of some somatic muscle of mesothorax (FBbt:00058880).
database_cross_reference: FBC:Autogenerated

flight muscle cell
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: flight muscle
subclass of: BFO_0000040
subclass of: somatic muscle cell of mesothorax
subclass of: trunk mesoderm derivative
subclass of: Restriction
  on property: part of
  some values from: flight muscle
subclass of: Restriction
  on property: develops from
  some values from: adepithelial cell of wing disc
subclass of: Restriction
  on property: capable of part of
  some values from: GO_0060361
subclass of: Restriction
  on property: receives synaptic input from neuron
  some values from: flight muscle motor neuron
definition: Any muscle cell (FBbt:00005074) that is part of some flight muscle (FBbt:00058881).
database_cross_reference: CL:0000196
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003360
in subset: cur

Axiom
annotated source: flight muscle cell
annotated property: definition
annotated target: Any muscle cell (FBbt:00005074) that is part of some flight muscle (FBbt:00058881).
database_cross_reference: FBC:Autogenerated

indirect flight muscle cell
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: indirect flight muscle
subclass of: flight muscle cell
subclass of: Restriction
  on property: part of
  some values from: indirect flight muscle
subclass of: Restriction
  on property: develops from
  some values from: indirect flight muscle precursor cell
subclass of: Restriction
  on property: receives synaptic input from neuron
  some values from: indirect flight muscle motor neuron
definition: Any muscle cell (FBbt:00005074) that is part of some indirect flight muscle (FBbt:00058882).
has exact synonym: IFM cell
has exact synonym: fibrillar muscle cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003361
in subset: cur

Axiom
annotated source: indirect flight muscle cell
annotated property: definition
annotated target: Any muscle cell (FBbt:00005074) that is part of some indirect flight muscle (FBbt:00058882).
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: indirect flight muscle cell
annotated property: hasExactSynonym
annotated target: IFM cell
database_cross_reference: FlyBase:FBrf0064793

Axiom
annotated source: indirect flight muscle cell
annotated property: hasExactSynonym
annotated target: fibrillar muscle cell
database_cross_reference: FlyBase:FBrf0064793

adult somatic muscle cell of abdomen
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: adult somatic muscle of abdomen
subclass of: adult somatic muscle cell
subclass of: Restriction
  on property: part of
  some values from: adult somatic muscle of abdomen
definition: Any muscle cell (FBbt:00005074) that is part of some adult somatic muscle of abdomen (FBbt:00058966).
has exact synonym: skeletal muscle cell of abdomen
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003447
in subset: cur

Axiom
annotated source: adult somatic muscle cell of abdomen
annotated property: definition
annotated target: Any muscle cell (FBbt:00005074) that is part of some adult somatic muscle of abdomen (FBbt:00058966).
database_cross_reference: FBC:Autogenerated

male abdominal muscle cell
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: male abdominal muscle
subclass of: adult somatic muscle cell of abdomen
subclass of: male-specific anatomical entity
subclass of: Restriction
  on property: part of
  some values from: male abdominal muscle
definition: Any muscle cell (FBbt:00005074) that is part of some male abdominal muscle (FBbt:00059016).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003505
in subset: cur

Axiom
annotated source: male abdominal muscle cell
annotated property: definition
annotated target: Any muscle cell (FBbt:00005074) that is part of some male abdominal muscle (FBbt:00059016).
database_cross_reference: FBC:Autogenerated

adult apodeme
type: Class
equivalent class: Class
  intersection of: apodeme
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: apodeme
subclass of: Restriction
  on property: part of
  some values from: adult integumentary system
definition: Apodeme that is part of an adult.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003516
in subset: cur
in subset: hidden assertion

Axiom
annotated source: adult apodeme
annotated property: definition
annotated target: Apodeme that is part of an adult.
database_cross_reference: FBC:SPR

adult visceral muscle cell
type: Class
equivalent class: Class
  intersection of: visceral muscle cell
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: visceral muscle cell
subclass of: adult muscle cell
definition: Muscle cell of a visceral muscle of the adult.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003525
in subset: cur
in subset: hidden assertion

Axiom
annotated source: adult visceral muscle cell
annotated property: definition
annotated target: Muscle cell of a visceral muscle of the adult.
database_cross_reference: FlyBase:FBrf0041814
database_cross_reference: FlyBase:FBrf0064793

hindgut muscle cell
type: Class
equivalent class: Class
  intersection of: visceral muscle cell
  intersection of: Restriction
    on property: part of
    some values from: hindgut
subclass of: visceral muscle cell
subclass of: Restriction
  on property: part of
  some values from: hindgut
definition: Cell that are part of the muscle fibers of the hindgut, the posterior part of the alimentary canal. It contains longitudinal and circular muscle fibers.
has broad synonym: intestine muscle
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003537
in subset: cur

Axiom
annotated source: hindgut muscle cell
annotated property: definition
annotated target: Cell that are part of the muscle fibers of the hindgut, the posterior part of the alimentary canal. It contains longitudinal and circular muscle fibers.
database_cross_reference: FlyBase:FBrf0007735

Axiom
annotated source: hindgut muscle cell
annotated property: hasBroadSynonym
annotated target: intestine muscle
database_cross_reference: FlyBase:FBrf0007735

adult heart muscle cell
type: Class
subclass of: adult visceral muscle cell
subclass of: Restriction
  on property: part of
  some values from: adult heart
definition: Muscle cell of a muscle of the adult that is associated with the heart.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003543
in subset: cur

Axiom
annotated source: adult heart muscle cell
annotated property: definition
annotated target: Muscle cell of a muscle of the adult that is associated with the heart.
database_cross_reference: FlyBase:FBrf0007735

adult alary muscle cell
type: Class
subclass of: adult heart muscle cell
subclass of: Restriction
  on property: attached to
  some values from: adult heart
definition: Muscle cell of a bilateral adult heart muscle that is involved in modulation of the flow of hemolymph into the cardiac tube, and support of the dorsal vessel during locomotion.
has exact synonym: AlMsc
has OBO namespace: fly_anatomy.ontology
has related synonym: am
id: FBbt:00003545
in subset: cur

Axiom
annotated source: adult alary muscle cell
annotated property: definition
annotated target: Muscle cell of a bilateral adult heart muscle that is involved in modulation of the flow of hemolymph into the cardiac tube, and support of the dorsal vessel during locomotion.
database_cross_reference: FlyBase:FBrf0007735
database_cross_reference: FlyBase:FBrf0064793
database_cross_reference: FlyBase:FBrf0208061

Axiom
annotated source: adult alary muscle cell
annotated property: hasExactSynonym
annotated target: AlMsc
database_cross_reference: FlyBase:FBrf0007735

Axiom
annotated source: adult alary muscle cell
annotated property: hasRelatedSynonym
annotated target: am
database_cross_reference: FlyBase:FBrf0208061

gonadal sheath muscle cell
type: Class
equivalent class: Class
  intersection of: adult visceral muscle cell
  intersection of: Restriction
    on property: part of
    some values from: gonadal sheath
subclass of: adult visceral muscle cell
subclass of: Restriction
  on property: part of
  some values from: gonadal sheath
definition: Muscle cell of a muscle that is part of an adult gonadal sheath.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003556
in subset: cur

Axiom
annotated source: gonadal sheath muscle cell
annotated property: definition
annotated target: Muscle cell of a muscle that is part of an adult gonadal sheath.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

adult nervous system
type: Class
equivalent class: Class
  intersection of: nervous system
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: nervous system
subclass of: Restriction
  on property: part of
  some values from: adult
definition: Any nervous system of the adult.
database_cross_reference: UBERON:6003559
database_cross_reference: VFB:FBbt_00003559
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003559
in subset: cur

Axiom
annotated source: adult nervous system
annotated property: definition
annotated target: Any nervous system of the adult.
database_cross_reference: FlyBase:FBrf0002482
database_cross_reference: FlyBase:FBrf0007196
database_cross_reference: FlyBase:FBrf0007735
database_cross_reference: FlyBase:FBrf0034076

thoracic neuroblast
type: Class
equivalent class: Class
  intersection of: neuroblast
  intersection of: Restriction
    on property: part of
    some values from: thoracic segment
subclass of: neuroblast of ventral nervous system
subclass of: Restriction
  on property: part of
  some values from: thoracic segment
definition: Any neuroblast (FBbt:00005146) that is part of some thoracic segment (FBbt:00000016).
database_cross_reference: VFB:FBbt_00003561
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003561
in subset: cur

Axiom
annotated source: thoracic neuroblast
annotated property: definition
annotated target: Any neuroblast (FBbt:00005146) that is part of some thoracic segment (FBbt:00000016).
database_cross_reference: FlyBase:FBrf0090460

abdominal neuroblast
type: Class
equivalent class: Class
  intersection of: neuroblast
  intersection of: Restriction
    on property: part of
    some values from: abdominal segment
subclass of: neuroblast of ventral nervous system
subclass of: Restriction
  on property: part of
  some values from: abdominal segment
definition: Any neuroblast (FBbt:00005146) that is part of some abdominal segment (FBbt:00000021).
database_cross_reference: VFB:FBbt_00003584
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003584
in subset: cur

Axiom
annotated source: abdominal neuroblast
annotated property: definition
annotated target: Any neuroblast (FBbt:00005146) that is part of some abdominal segment (FBbt:00000021).
database_cross_reference: FlyBase:FBrf0090460

adult central nervous system
type: Class
equivalent class: Class
  intersection of: central nervous system
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: central nervous system
subclass of: Restriction
  on property: part of
  some values from: adult nervous system
definition: Central nervous system of the adult.
database_cross_reference: UBERON:6003623
database_cross_reference: VFB:FBbt_00003623
has exact synonym: adult CNS
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003623
in subset: cur

Axiom
annotated source: adult central nervous system
annotated property: definition
annotated target: Central nervous system of the adult.
database_cross_reference: FBC:SPR

adult brain
type: Class
equivalent class: Class
  intersection of: brain
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: brain
subclass of: Class
  intersection of: Restriction
    on property: part of
    some values from: adult head
  intersection of: Restriction
    on property: part of
    some values from: adult central nervous system
definition: Portion of the adult central nervous system found in the head, consisting of the cerebral and gnathal ganglia (Ito et al., 2014).
database_cross_reference: UBERON:6003624
database_cross_reference: VFB:FBbt_00003624
has OBO namespace: fly_anatomy.ontology
id: FBbt:00003624
in subset: BrainName
in subset: cur

Axiom
annotated source: adult brain
annotated property: definition
annotated target: Portion of the adult central nervous system found in the head, consisting of the cerebral and gnathal ganglia (Ito et al., 2014).
database_cross_reference: FlyBase:FBrf0224194

adult brain cell body rind
type: Class
subclass of: cell body rind of adult central nervous system
subclass of: Restriction
  on property: part of
  some values from: adult brain
definition: Superficial layer of the brain, composed of glia and the cell bodies of neurons (soma).
database_cross_reference: VFB:FBbt_00003625
has exact synonym: adult brain cortex
has OBO namespace: fly_anatomy.ontology
has related synonym: cerebral cortex
id: FBbt:00003625
in subset: cur
comment: Ito et al. (2014) may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. rLHa for anterior to the lateral horn; rSMPm for medial to the superior medial protocerebrum, etc.

Axiom
annotated source: adult brain cell body rind
annotated property: definition
annotated target: Superficial layer of the brain, composed of glia and the cell bodies of neurons (soma).
database_cross_reference: FBC:VH

supraesophageal ganglion
type: Class
subclass of: ganglion
subclass of: Restriction
  on property: part of
  some values from: brain
definition: The pre-oral neuropils of the brain located above and some of it below the esophagus, comprising three fused ganglia (protocerebrum, deutocerebrum, and tritocerebrum) in the head.
database_cross_reference: UBERON:6003626
database_cross_reference: VFB:FBbt_00003626
has OBO namespace: fly_anatomy.ontology
has related synonym: SPG
id: FBbt:00003626
in subset: BrainName
in subset: cur
comment: In the adult, this region is referred to as cerebral ganglia (Ito et al., 2014).

Axiom
annotated source: supraesophageal ganglion
annotated property: definition
annotated target: The pre-oral neuropils of the brain located above and some of it below the esophagus, comprising three fused ganglia (protocerebrum, deutocerebrum, and tritocerebrum) in the head.
database_cross_reference: FlyBase:FBrf0224194

gnathal ganglion
type: Class
subclass of: ganglion
subclass of: Restriction
  on property: part of
  some values from: subesophageal zone
definition: Region of the central nervous system consisting of the neuromeres of the three gnathal segments; mandibular, maxillary and labial (Ito et al., 2014; Hartenstein et al., 2018). It is located beneath the esophagus (Ito et al., 2014; Hartenstein et al., 2018). In the early larva, the three segmental neuromeres can be clearly identified, but they become fused during development and their segmental organization is obscured in the adult (Hartenstein et al., 2018).
database_cross_reference: VFB:FBbt_00004013
has exact synonym: GNG
has exact synonym: SEG
has exact synonym: SOG
has exact synonym: subesophageal ganglion
has exact synonym: suboesophageal ganglion
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004013
in subset: cur

Axiom
annotated source: gnathal ganglion
annotated property: definition
annotated target: Region of the central nervous system consisting of the neuromeres of the three gnathal segments; mandibular, maxillary and labial (Ito et al., 2014; Hartenstein et al., 2018). It is located beneath the esophagus (Ito et al., 2014; Hartenstein et al., 2018). In the early larva, the three segmental neuromeres can be clearly identified, but they become fused during development and their segmental organization is obscured in the adult (Hartenstein et al., 2018).
database_cross_reference: FlyBase:FBrf0224194
database_cross_reference: FlyBase:FBrf0237252

Axiom
annotated source: gnathal ganglion
annotated property: hasExactSynonym
annotated target: GNG
database_cross_reference: FlyBase:FBrf0224194

Axiom
annotated source: gnathal ganglion
annotated property: hasExactSynonym
annotated target: SEG
database_cross_reference: FlyBase:FBrf0224194

Axiom
annotated source: gnathal ganglion
annotated property: hasExactSynonym
annotated target: subesophageal ganglion
database_cross_reference: FlyBase:FBrf0237252

Axiom
annotated source: gnathal ganglion
annotated property: hasExactSynonym
annotated target: suboesophageal ganglion
database_cross_reference: FlyBase:FBrf0080339

adult cervical connective
type: Class
subclass of: tract
subclass of: Restriction
  on property: part of
  some values from: adult central nervous system
subclass of: Restriction
  on property: overlaps
  some values from: neck
subclass of: Restriction
  on property: innervates
  some values from: adult ventral nerve cord
subclass of: Restriction
  on property: innervates
  some values from: adult gnathal ganglion
definition: Adult tract connecting the brain to the ventral nerve cord (Ito et al., 2014; Court et al., 2020). It emerges from the posterior gnathal ganglion (Ito et al., 2014; Court et al., 2020) and consists of 4 bundles of neurites in two bilateral pairs (one dorsal pair, one ventral pair) (Power, 1948). It contains around 3700 axons (Phelps et al., 2021).
database_cross_reference: VFB:FBbt_00004019
has exact synonym: CC
has exact synonym: CCT
has exact synonym: CV
has exact synonym: CvC
has exact synonym: CvCon
has exact synonym: cephalo-thoracic cord
has exact synonym: cephalo-thoracic nerve strand
has exact synonym: neck connective
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004019
in subset: cur

Axiom
annotated source: adult cervical connective
annotated property: definition
annotated target: Adult tract connecting the brain to the ventral nerve cord (Ito et al., 2014; Court et al., 2020). It emerges from the posterior gnathal ganglion (Ito et al., 2014; Court et al., 2020) and consists of 4 bundles of neurites in two bilateral pairs (one dorsal pair, one ventral pair) (Power, 1948). It contains around 3700 axons (Phelps et al., 2021).
database_cross_reference: FlyBase:FBrf0007196
database_cross_reference: FlyBase:FBrf0064803
database_cross_reference: FlyBase:FBrf0224194
database_cross_reference: FlyBase:FBrf0246815
database_cross_reference: FlyBase:FBrf0247998

Axiom
annotated source: adult cervical connective
annotated property: hasExactSynonym
annotated target: CC
database_cross_reference: FlyBase:FBrf0219809

Axiom
annotated source: adult cervical connective
annotated property: hasExactSynonym
annotated target: CCT
database_cross_reference: FlyBase:FBrf0223329

Axiom
annotated source: adult cervical connective
annotated property: hasExactSynonym
annotated target: CV
database_cross_reference: FlyBase:FBrf0224194
has synonym type: BRAIN NAME ABV

Axiom
annotated source: adult cervical connective
annotated property: hasExactSynonym
annotated target: CvC
database_cross_reference: FlyBase:FBrf0246815

Axiom
annotated source: adult cervical connective
annotated property: hasExactSynonym
annotated target: CvCon
database_cross_reference: FlyBase:FBrf0246815

Axiom
annotated source: adult cervical connective
annotated property: hasExactSynonym
annotated target: cephalo-thoracic cord
database_cross_reference: FlyBase:FBrf0007733

Axiom
annotated source: adult cervical connective
annotated property: hasExactSynonym
annotated target: cephalo-thoracic nerve strand
database_cross_reference: FlyBase:FBrf0246815

Axiom
annotated source: adult cervical connective
annotated property: hasExactSynonym
annotated target: neck connective
database_cross_reference: FlyBase:FBrf0239335

adult ventral nerve cord
type: Class
subclass of: ventral nerve cord
subclass of: ganglion
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: adult central nervous system
subclass of: Restriction
  on property: develops from
  some values from: larval ventral nerve cord
definition: The region of the adult central nervous system posterior to the brain, containing all of the thoracic and abdominal neuromeres (Court et al., 2020). It exists as a single consolidated ganglion located in the ventral part of the thorax (Court et al., 2020). It is connected to the brain by descending and ascending neurons that pass through the neck connective (Court et al., 2020).
database_cross_reference: VFB:FBbt_00004052
has exact synonym: TAC
has exact synonym: TAG
has exact synonym: adult ThGng
has exact synonym: adult VNC
has exact synonym: adult VNS
has exact synonym: adult ventral nervous system
has exact synonym: thoracico-abdominal center
has exact synonym: thoracico-abdominal ganglia
has exact synonym: thoracico-abdominal ganglion
has exact synonym: thoracico-abdominal nervous system
has exact synonym: thoracicoabdominal ganglion
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004052
in subset: cur

Axiom
annotated source: adult ventral nerve cord
annotated property: definition
annotated target: The region of the adult central nervous system posterior to the brain, containing all of the thoracic and abdominal neuromeres (Court et al., 2020). It exists as a single consolidated ganglion located in the ventral part of the thorax (Court et al., 2020). It is connected to the brain by descending and ascending neurons that pass through the neck connective (Court et al., 2020).
database_cross_reference: FlyBase:FBrf0007196
database_cross_reference: FlyBase:FBrf0224194
database_cross_reference: FlyBase:FBrf0246815

Axiom
annotated source: adult ventral nerve cord
annotated property: hasExactSynonym
annotated target: TAC
database_cross_reference: FlyBase:FBrf0246815

Axiom
annotated source: adult ventral nerve cord
annotated property: hasExactSynonym
annotated target: TAG
database_cross_reference: FlyBase:FBrf0224194
has synonym type: BRAIN NAME ABV

Axiom
annotated source: adult ventral nerve cord
annotated property: hasExactSynonym
annotated target: adult ThGng
database_cross_reference: FlyBase:FBrf0246815

Axiom
annotated source: adult ventral nerve cord
annotated property: hasExactSynonym
annotated target: adult VNC
database_cross_reference: FlyBase:FBrf0246815

Axiom
annotated source: adult ventral nerve cord
annotated property: hasExactSynonym
annotated target: adult VNS
database_cross_reference: FlyBase:FBrf0246815

Axiom
annotated source: adult ventral nerve cord
annotated property: hasExactSynonym
annotated target: adult ventral nervous system
database_cross_reference: FlyBase:FBrf0246815

Axiom
annotated source: adult ventral nerve cord
annotated property: hasExactSynonym
annotated target: thoracico-abdominal center
database_cross_reference: FlyBase:FBrf0007196

Axiom
annotated source: adult ventral nerve cord
annotated property: hasExactSynonym
annotated target: thoracico-abdominal ganglia
database_cross_reference: FlyBase:FBrf0246815

Axiom
annotated source: adult ventral nerve cord
annotated property: hasExactSynonym
annotated target: thoracico-abdominal ganglion
database_cross_reference: FlyBase:FBrf0246815

Axiom
annotated source: adult ventral nerve cord
annotated property: hasExactSynonym
annotated target: thoracico-abdominal nervous system
database_cross_reference: FlyBase:FBrf0007196

Axiom
annotated source: adult ventral nerve cord
annotated property: hasExactSynonym
annotated target: thoracicoabdominal ganglion
database_cross_reference: FlyBase:FBrf0246815

indirect flight muscle motor neuron
type: Class
equivalent class: Class
  intersection of: motor neuron
  intersection of: Restriction
    on property: sends synaptic output to cell
    some values from: indirect flight muscle cell
subclass of: flight muscle motor neuron
subclass of: Restriction
  on property: sends synaptic output to cell
  some values from: indirect flight muscle cell
definition: Motor neuron that innervates the indirect flight muscles.
database_cross_reference: VFB:FBbt_00004074
has exact synonym: wing control muscle motoneuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004074
in subset: cur

Axiom
annotated source: indirect flight muscle motor neuron
annotated property: definition
annotated target: Motor neuron that innervates the indirect flight muscles.
database_cross_reference: FlyBase:FBrf0048552
database_cross_reference: doi:10.1101/2023.05.31.542897

Axiom
annotated source: indirect flight muscle motor neuron
annotated property: hasExactSynonym
annotated target: wing control muscle motoneuron
database_cross_reference: doi:10.1101/2023.05.31.542897

peptidergic neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: capable of
    some values from: GO_0002790
subclass of: neuron
subclass of: Restriction
  on property: capable of
  some values from: GO_0002790
definition: Any neuron (FBbt:00005106) that is capable of some peptide secretion (GO:0002790).
database_cross_reference: CL:0000110
database_cross_reference: VFB:FBbt_00004101
has OBO namespace: fly_anatomy.ontology
has related synonym: peptinergic neuron
id: FBbt:00004101
in subset: cur

Axiom
annotated source: peptidergic neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that is capable of some peptide secretion (GO:0002790).
database_cross_reference: FlyBase:FBrf0052426

adult sense organ
type: Class
equivalent class: Class
  intersection of: sense organ
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: sense organ
subclass of: Restriction
  on property: part of
  some values from: adult
definition: Any sense organ of the adult.
database_cross_reference: VFB:FBbt_00004113
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004113
in subset: cur

Axiom
annotated source: adult sense organ
annotated property: definition
annotated target: Any sense organ of the adult.
database_cross_reference: FlyBase:FBrf0007734
database_cross_reference: FlyBase:FBrf0031004

head sensillum
type: Class
equivalent class: Class
  intersection of: sensillum
  intersection of: Restriction
    on property: part of
    some values from: head
subclass of: sensillum
subclass of: Restriction
  on property: part of
  some values from: head
definition: Any sensillum (FBbt:00007152) that is part of some head (FBbt:00000004).
database_cross_reference: UBERON:0000963
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004114
in subset: cur

Axiom
annotated source: head sensillum
annotated property: definition
annotated target: Any sensillum (FBbt:00007152) that is part of some head (FBbt:00000004).
database_cross_reference: FBC:Autogenerated

hindgut anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: Restriction
  on property: part of
  some values from: posterior endoderm anlage
subclass of: Restriction
  on property: develops from
  some values from: hindgut anlage in statu nascendi
subclass of: Restriction
  on property: develops into
  some values from: inclusive hindgut primordium
definition: A(n) anlage that develops into some inclusive hindgut primordium. It develops from some hindgut anlage in statu nascendi.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004202
in subset: cur

Axiom
annotated source: hindgut anlage
annotated property: definition
annotated target: A(n) anlage that develops into some inclusive hindgut primordium. It develops from some hindgut anlage in statu nascendi.
database_cross_reference: FBC:Autogenerated

ventral ectoderm anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: Restriction
  on property: part of
  some values from: ectoderm anlage
subclass of: Restriction
  on property: develops into
  some values from: ventral ectoderm
definition: Anlage that develops into the ventral ectoderm. It is found in the lateroventral trunk region of the embryo at the cellular blastoderm stage, prior to gastrulation (Stathopoulos and Newcomb, 2020).
has exact synonym: presumptive neuroectoderm
has exact synonym: ventral/neuroectoderm anlage
has OBO namespace: fly_anatomy.ontology
has related synonym: Asn/A VenEc
id: FBbt:00004204
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: ventral ectoderm anlage
annotated property: definition
annotated target: Anlage that develops into the ventral ectoderm. It is found in the lateroventral trunk region of the embryo at the cellular blastoderm stage, prior to gastrulation (Stathopoulos and Newcomb, 2020).
database_cross_reference: FlyBase:FBrf0244630

Axiom
annotated source: ventral ectoderm anlage
annotated property: hasExactSynonym
annotated target: presumptive neuroectoderm
database_cross_reference: FlyBase:FBrf0244630

Axiom
annotated source: ventral ectoderm anlage
annotated property: hasExactSynonym
annotated target: ventral/neuroectoderm anlage
database_cross_reference: FlyBase:FBrf0244630

Axiom
annotated source: ventral ectoderm anlage
annotated property: hasRelatedSynonym
annotated target: Asn/A VenEc
database_cross_reference: https://orcid.org/0000-0002-7073-9172

developing embryonic structure
type: Class
equivalent class: Class
  intersection of: developing material anatomical entity
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: developing material anatomical entity
subclass of: Restriction
  on property: part of
  some values from: embryo
definition: Any developing material anatomical entity of the embryo.
database_cross_reference: UBERON:0002050
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004208
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: developing embryonic structure
annotated property: definition
annotated target: Any developing material anatomical entity of the embryo.
database_cross_reference: FBC:Autogenerated

adult thoracic sensillum
type: Class
equivalent class: Class
  intersection of: sensillum
  intersection of: Restriction
    on property: part of
    some values from: adult thorax
subclass of: adult sensillum
subclass of: Restriction
  on property: part of
  some values from: adult thorax
definition: Any sensillum (FBbt:00007152) that is part of some adult thorax (FBbt:00003018).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004245
in subset: cur

Axiom
annotated source: adult thoracic sensillum
annotated property: definition
annotated target: Any sensillum (FBbt:00007152) that is part of some adult thorax (FBbt:00003018).
database_cross_reference: FBC:Autogenerated

adult prothoracic sensillum
type: Class
equivalent class: Class
  intersection of: adult sensillum
  intersection of: Restriction
    on property: part of
    some values from: prothoracic segment
subclass of: adult thoracic sensillum
subclass of: Restriction
  on property: part of
  some values from: adult prothoracic segment
definition: Any adult sensillum (FBbt:00007239) that is part of some prothoracic segment (FBbt:00000017).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004247
in subset: cur

Axiom
annotated source: adult prothoracic sensillum
annotated property: definition
annotated target: Any adult sensillum (FBbt:00007239) that is part of some prothoracic segment (FBbt:00000017).
database_cross_reference: FBC:Autogenerated

adult mesothoracic sensillum
type: Class
equivalent class: Class
  intersection of: adult sensillum
  intersection of: Restriction
    on property: part of
    some values from: mesothoracic segment
subclass of: adult thoracic sensillum
subclass of: Restriction
  on property: part of
  some values from: adult mesothoracic segment
definition: Any adult sensillum (FBbt:00007239) that is part of some mesothoracic segment (FBbt:00000018).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004297
in subset: cur

Axiom
annotated source: adult mesothoracic sensillum
annotated property: definition
annotated target: Any adult sensillum (FBbt:00007239) that is part of some mesothoracic segment (FBbt:00000018).
database_cross_reference: FBC:Autogenerated

late extended germ band embryo
type: Class
subclass of: extended germ band embryo
subclass of: Restriction
  on property: develops from
  some values from: early extended germ band embryo
definition: A collective term for stages 11 and 12.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004450
in subset: cur

Axiom
annotated source: late extended germ band embryo
annotated property: definition
annotated target: A collective term for stages 11 and 12.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

adult abdominal sensillum
type: Class
equivalent class: Class
  intersection of: sensillum
  intersection of: Restriction
    on property: part of
    some values from: adult abdomen
subclass of: adult sensillum
subclass of: Restriction
  on property: part of
  some values from: adult abdomen
definition: Sensillum of the adult abdomen.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004461
in subset: cur

Axiom
annotated source: adult abdominal sensillum
annotated property: definition
annotated target: Sensillum of the adult abdomen.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

sclerite
type: Class
subclass of: region of integument
definition: A region of integument whose external cuticular part is a hard, sclerotized plate.
has alternative id: FBbt:00007287
database_cross_reference: UBERON:6004475
has exact synonym: integumentary plate
has OBO namespace: fly_anatomy.ontology
has related synonym: plate
id: FBbt:00004475
in subset: FB gloss
in subset: cur

Axiom
annotated source: sclerite
annotated property: definition
annotated target: A region of integument whose external cuticular part is a hard, sclerotized plate.
database_cross_reference: FBC:GG

abdominal tergite
type: Class
subclass of: sclerite
subclass of: dorsal ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: adult abdominal segment
subclass of: Restriction
  on property: part of
  some values from: adult external abdomen
subclass of: Restriction
  on property: develops from
  some values from: anterior dorsal histoblast nest abdominal
subclass of: Restriction
  on property: develops from
  some values from: posterior dorsal histoblast nest abdominal
definition: The dorsal plate (sclerite) of an adult abdominal segment.
has alternative id: FBbt:00004789
database_cross_reference: UBERON:6004476
database_cross_reference: https://www.ento.csiro.au/biology/drosophila/melanogaster.html
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004476
in subset: FB gloss
in subset: cur

Axiom
annotated source: abdominal tergite
annotated property: definition
annotated target: The dorsal plate (sclerite) of an adult abdominal segment.
database_cross_reference: FlyBase:FBrf0007734
database_cross_reference: FlyBase:FBrf0111704

neck
type: Class
subclass of: organism subdivision
subclass of: Restriction
  on property: part of
  some values from: adult prothoracic segment
definition: Structure connecting the head to the body, through which the esophagus, cervical connective, two salivary gland ducts, two tracheal trunks and two stomodeal nerves pass.
database_cross_reference: https://www.ento.csiro.au/biology/drosophila/melanogaster.html
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004550
in subset: cur

Axiom
annotated source: neck
annotated property: definition
annotated target: Structure connecting the head to the body, through which the esophagus, cervical connective, two salivary gland ducts, two tracheal trunks and two stomodeal nerves pass.
database_cross_reference: FlyBase:FBrf0007734

adult external abdomen
type: Class
subclass of: tagmatic subdivision of integument
subclass of: Restriction
  on property: part of
  some values from: adult abdomen
subclass of: Restriction
  on property: part of
  some values from: adult integumentary system
definition: The external integumentary structures that make up the surface of the adult abdomen.
database_cross_reference: UBERON:6004788
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004788
in subset: cur

Axiom
annotated source: adult external abdomen
annotated property: definition
annotated target: The external integumentary structures that make up the surface of the adult abdomen.
database_cross_reference: FlyBase:FBrf0007734

abdominal tergite 6
type: Class
equivalent class: Class
  intersection of: abdominal tergite
  intersection of: Restriction
    on property: part of
    some values from: abdominal segment 6
subclass of: abdominal tergite
subclass of: Restriction
  on property: part of
  some values from: adult abdominal segment 6
subclass of: Restriction
  on property: develops from
  some values from: anterior dorsal histoblast nest abdominal 6
subclass of: Restriction
  on property: develops from
  some values from: posterior dorsal histoblast nest abdominal 6
definition: Any abdominal tergite (FBbt:00004476) that is part of some abdominal segment 6 (FBbt:00000027).
database_cross_reference: https://www.ento.csiro.au/biology/drosophila/melanogaster.html
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004795
in subset: cur

Axiom
annotated source: abdominal tergite 6
annotated property: definition
annotated target: Any abdominal tergite (FBbt:00004476) that is part of some abdominal segment 6 (FBbt:00000027).
database_cross_reference: FBC:Autogenerated

organ system
type: Class
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: organism
definition: A division of the whole organism into specialized systems.
database_cross_reference: UBERON:0000467
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004856
in subset: cur

Axiom
annotated source: organ system
annotated property: definition
annotated target: A division of the whole organism into specialized systems.
database_cross_reference: FBC:GG

reproductive system
type: Class
subclass of: organ system
subclass of: Restriction
  on property: has characteristic
  some values from: PATO_0002451
definition: System comprising the internal and external anatomy required for production of gametes and fertilization. It is sexually dimorphic.
database_cross_reference: UBERON:0000990
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004857
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: reproductive system
annotated property: definition
annotated target: System comprising the internal and external anatomy required for production of gametes and fertilization. It is sexually dimorphic.
database_cross_reference: FlyBase:FBrf0007735

gonad
type: Class
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: reproductive system
definition: The organ of the reproductive system in which the germ cells reside.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004858
in subset: FB gloss
in subset: cur

Axiom
annotated source: gonad
annotated property: definition
annotated target: The organ of the reproductive system in which the germ cells reside.
database_cross_reference: FBC:GG

gonadal sheath
type: Class
subclass of: multi-tissue structure
subclass of: Restriction
  on property: part of
  some values from: gonad
definition: Thin covering of the gonads, containing one or more epithelial layers and a muscle layer.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004859
in subset: cur

Axiom
annotated source: gonadal sheath
annotated property: definition
annotated target: Thin covering of the gonads, containing one or more epithelial layers and a muscle layer.
database_cross_reference: FlyBase:FBrf0064777

male reproductive system
type: Class
equivalent class: Class
  intersection of: reproductive system
  intersection of: Restriction
    on property: part of
    some values from: male organism
subclass of: reproductive system
subclass of: male-specific anatomical entity
definition: Any reproductive system (FBbt:00004857) that is part of some male organism (FBbt:00007004).
database_cross_reference: UBERON:0000079
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004927
in subset: FlyTed
in subset: cur

Axiom
annotated source: male reproductive system
annotated property: definition
annotated target: Any reproductive system (FBbt:00004857) that is part of some male organism (FBbt:00007004).
database_cross_reference: FlyBase:FBrf0007735
database_cross_reference: FlyBase:FBrf0034075

integumentary system
type: Class
subclass of: organ system
definition: The organ system that forms the covering layer of the animal.
database_cross_reference: UBERON:0002416
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004969
in subset: FB gloss
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: integumentary system
annotated property: definition
annotated target: The organ system that forms the covering layer of the animal.
database_cross_reference: FBC:GG

cuticle
type: Class
subclass of: acellular anatomical structure
subclass of: Restriction
  on property: part of
  some values from: integumentary system
subclass of: Restriction
  on property: develops from
  some values from: epidermis
definition: The outer non-living layer of the integumentary system that is secreted by the underlying epidermis.
database_cross_reference: UBERON:0001001
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004970
in subset: FB gloss
in subset: cur

Axiom
annotated source: cuticle
annotated property: definition
annotated target: The outer non-living layer of the integumentary system that is secreted by the underlying epidermis.
database_cross_reference: FlyBase:FBrf0064790

trichome
type: Class
subclass of: cuticular specialization
definition: Non-innervated projection of the cuticle around an actin-rich cellular process of an underlying epidermal cell.
database_cross_reference: UBERON:6004979
has OBO namespace: fly_anatomy.ontology
has related synonym: cell hair
id: FBbt:00004979
in subset: cur

Axiom
annotated source: trichome
annotated property: definition
annotated target: Non-innervated projection of the cuticle around an actin-rich cellular process of an underlying epidermal cell.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

embryonic/larval cuticle
type: Class
subclass of: cuticle
subclass of: Restriction
  on property: part of
  some values from: larval integumentary system
definition: Cuticle of the late embryo or larva.
database_cross_reference: UBERON:6004983
has exact synonym: larval cuticle
has OBO namespace: fly_anatomy.ontology
id: FBbt:00004983
in subset: cur

Axiom
annotated source: embryonic/larval cuticle
annotated property: definition
annotated target: Cuticle of the late embryo or larva.
database_cross_reference: FlyBase:FBrf0234504

epidermis
type: Class
subclass of: cuboidal/columnar epithelium
subclass of: Restriction
  on property: part of
  some values from: integumentary system
definition: Tissue composed of epithelial cells. It secretes and underlies the cuticle.
database_cross_reference: UBERON:0007376
has OBO namespace: fly_anatomy.ontology
has related synonym: hypoderm
has related synonym: hypodermis
id: FBbt:00004993
in subset: FB gloss
in subset: cur

Axiom
annotated source: epidermis
annotated property: definition
annotated target: Tissue composed of epithelial cells. It secretes and underlies the cuticle.
database_cross_reference: FlyBase:FBrf0064790

tracheal system
type: Class
subclass of: BFO_0000040
subclass of: organ system
subclass of: Restriction
  on property: capable of
  some values from: GO_0007585
definition: Air-filled network of tracheae, opening to the exterior via spiracles and containing minute tracheoles where gaseous exchange between air and tissues occurs (Miller, 1950).
database_cross_reference: UBERON:0005155
has exact synonym: respiratory system
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005024
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: tracheal system
annotated property: definition
annotated target: Air-filled network of tracheae, opening to the exterior via spiracles and containing minute tracheoles where gaseous exchange between air and tissues occurs (Miller, 1950).
database_cross_reference: FlyBase:FBrf0007735
database_cross_reference: FlyBase:FBrf0064787

Axiom
annotated source: tracheal system
annotated property: hasExactSynonym
annotated target: respiratory system
database_cross_reference: FlyBase:FBrf0007735

tracheocyte
type: Class
subclass of: epithelial cell
subclass of: Restriction
  on property: part of
  some values from: tracheal system
definition: Epithelial cell of the tracheal epithelium.
database_cross_reference: CL:0008026
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005038
in subset: cur
in subset: scrnaseq slim

Axiom
annotated source: tracheocyte
annotated property: definition
annotated target: Epithelial cell of the tracheal epithelium.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

larval tracheocyte
type: Class
equivalent class: Class
  intersection of: tracheocyte
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: tracheocyte
subclass of: larval epithelial cell
subclass of: Restriction
  on property: part of
  some values from: larval tracheal system
definition: Any tracheocyte of the larva.
has exact synonym: embryonic/larval tracheocyte
has OBO namespace: fly_anatomy.ontology
has related synonym: larval tracheal cell
id: FBbt:00005039

Axiom
annotated source: larval tracheocyte
annotated property: definition
annotated target: Any tracheocyte of the larva.
database_cross_reference: FBC:Autogenerated

adult tracheocyte
type: Class
equivalent class: Class
  intersection of: tracheocyte
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: tracheocyte
subclass of: adult epithelial cell
subclass of: Restriction
  on property: part of
  some values from: adult tracheal system
definition: Any tracheocyte of the adult.
has OBO namespace: fly_anatomy.ontology
has related synonym: adult tracheal cell
id: FBbt:00005040
in subset: cur

Axiom
annotated source: adult tracheocyte
annotated property: definition
annotated target: Any tracheocyte of the adult.
database_cross_reference: FBC:Autogenerated

digestive system
type: Class
subclass of: organ system
definition: Organ system comprising the alimentary canal and its associated organs, including the mouthparts, labellar and salivary glands and the Malpighian tubules (Miller, 1950).
database_cross_reference: UBERON:0001007
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005055
in subset: FB gloss
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: digestive system
annotated property: definition
annotated target: Organ system comprising the alimentary canal and its associated organs, including the mouthparts, labellar and salivary glands and the Malpighian tubules (Miller, 1950).
database_cross_reference: FlyBase:FBrf0007735

excretory system
type: Class
subclass of: organ system
definition: The system of organs and cells involved in the excretion of waste products.
database_cross_reference: UBERON:0001008
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005056
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: excretory system
annotated property: definition
annotated target: The system of organs and cells involved in the excretion of waste products.
database_cross_reference: FlyBase:FBrf0064792

circulatory system
type: Class
subclass of: organ system
definition: System that functions to circulate hemolymph throughout the body. It is an open circulatory system, consisting of the dorsal vessel, body cavity, accessory pulsatile organs and the hemolymph (Miller, 1950).
database_cross_reference: UBERON:0009054
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005057
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: circulatory system
annotated property: definition
annotated target: System that functions to circulate hemolymph throughout the body. It is an open circulatory system, consisting of the dorsal vessel, body cavity, accessory pulsatile organs and the hemolymph (Miller, 1950).
database_cross_reference: FlyBase:FBrf0007735

hemocyte
type: Class
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: circulatory system
subclass of: Restriction
  on property: expresses
  some values from: FBgn0028430
definition: Blood cell of the circulatory system that is involved in the cellular immune response. It expresses Hemese, a pan-hemocyte marker (Tattikota et al., 2020).
database_cross_reference: CL:0000387
has exact synonym: haemocyte
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005063
in subset: cur
in subset: scrnaseq slim

Axiom
annotated source: hemocyte
annotated property: definition
annotated target: Blood cell of the circulatory system that is involved in the cellular immune response. It expresses Hemese, a pan-hemocyte marker (Tattikota et al., 2020).
database_cross_reference: FlyBase:FBrf0200434
database_cross_reference: FlyBase:FBrf0245741

adipose system
type: Class
subclass of: organ system
definition: The system of organs and cells involved in fat storage.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005065
in subset: FB gloss
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: adipose system
annotated property: definition
annotated target: The system of organs and cells involved in fat storage.
database_cross_reference: FBC:GG

fat body
type: Class
subclass of: BFO_0000040
subclass of: portion of tissue
subclass of: Restriction
  on property: part of
  some values from: adipose system
subclass of: Restriction
  on property: capable of
  some values from: GO_0019915
subclass of: Restriction
  on property: composed primarily of
  some values from: fat cell
definition: Collective term for the masses and sheets of adipose tissue that are distributed throughout the organism's body. The adult and larval fat bodies are composed of different cell lineages, but perform the same main function of fat storage (Musselman and Kuhnlein, 2018).
database_cross_reference: UBERON:0003917
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005066
in subset: FB gloss
in subset: cur

Axiom
annotated source: fat body
annotated property: definition
annotated target: Collective term for the masses and sheets of adipose tissue that are distributed throughout the organism's body. The adult and larval fat bodies are composed of different cell lineages, but perform the same main function of fat storage (Musselman and Kuhnlein, 2018).
database_cross_reference: FlyBase:FBrf0031020
database_cross_reference: FlyBase:FBrf0064793
database_cross_reference: FlyBase:FBrf0238315

fat body primordium
type: Class
subclass of: primordium
subclass of: somatic trunk mesoderm derivative
subclass of: Restriction
  on property: develops from
  some values from: fat body/gonad primordium
subclass of: Restriction
  on property: develops into
  some values from: embryonic/larval fat body
definition: The fat body primordium after the gonadal sheath primordium splits from it during stage 14. By stage 15, the different primordia fuse to form a continuous layer (Hoshizaki et al., 1994). The precursor fat cells it contains continue differentiating until stage 17, when the primordium becomes the fat body proper (Campos-Ortega and Hartenstein, 1997).
has narrow synonym: embryonic fat body
has OBO namespace: fly_anatomy.ontology
has related synonym: fat body specific anlage
id: FBbt:00005067
in subset: cur

Axiom
annotated source: fat body primordium
annotated property: definition
annotated target: The fat body primordium after the gonadal sheath primordium splits from it during stage 14. By stage 15, the different primordia fuse to form a continuous layer (Hoshizaki et al., 1994). The precursor fat cells it contains continue differentiating until stage 17, when the primordium becomes the fat body proper (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0073371
database_cross_reference: FlyBase:FBrf0089570

Axiom
annotated source: fat body primordium
annotated property: hasNarrowSynonym
annotated target: embryonic fat body
database_cross_reference: FBC:DPG

endocrine system
type: Class
subclass of: non-connected functional system
definition: Non-connected system of anatomical structures which have some endocrine function.
database_cross_reference: UBERON:0000949
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005068
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: endocrine system
annotated property: definition
annotated target: Non-connected system of anatomical structures which have some endocrine function.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

muscle system
type: Class
subclass of: organ system
definition: System of contractile somatic and visceral muscle fibers arranged in groups and layers (Miller, 1950).
has exact synonym: muscular system
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005069
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: muscle system
annotated property: definition
annotated target: System of contractile somatic and visceral muscle fibers arranged in groups and layers (Miller, 1950).
database_cross_reference: FlyBase:FBrf0007735
database_cross_reference: FlyBase:FBrf0031016
database_cross_reference: FlyBase:FBrf0041814
database_cross_reference: FlyBase:FBrf0044229
database_cross_reference: FlyBase:FBrf0064793

Axiom
annotated source: muscle system
annotated property: hasExactSynonym
annotated target: muscular system
database_cross_reference: FlyBase:FBrf0007735

visceral muscle cell
type: Class
subclass of: muscle cell
definition: Muscle cell of a muscle that moves the viscera, usually with a peristaltic or compressing function, and has only one or, commonly no attachment to the body wall. Visceral muscles differ from somatic muscles in several respects: adjacent fibers are held together by desmosomes, each fiber is uninucleate and the contractile material is not grouped into fibrils but packs the whole fiber. The visceral musculature comprises musculature of the intestine, reproductive system and circulatory system (Miller, 1950). The circular fibers derive from a bilaterally symmetrical band of mesodermal cells extending continuously throughout most of the germ band. The longitudinal fibers derive from clusters of mesodermal cells which appear during stage 12 at the posterior end of the embryo and migrate anteriorly.
has broad synonym: smooth muscle
database_cross_reference: CL:0008007
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005070
in subset: cur
comment: It is quite common to refer to visceral muscles as smooth muscles, by analogy with vertebrates; however most visceral (and somatic) muscles in Drosophila are actually striated (Miller, 1950; Bate, 1993).

Axiom
annotated source: visceral muscle cell
annotated property: definition
annotated target: Muscle cell of a muscle that moves the viscera, usually with a peristaltic or compressing function, and has only one or, commonly no attachment to the body wall. Visceral muscles differ from somatic muscles in several respects: adjacent fibers are held together by desmosomes, each fiber is uninucleate and the contractile material is not grouped into fibrils but packs the whole fiber. The visceral musculature comprises musculature of the intestine, reproductive system and circulatory system (Miller, 1950). The circular fibers derive from a bilaterally symmetrical band of mesodermal cells extending continuously throughout most of the germ band. The longitudinal fibers derive from clusters of mesodermal cells which appear during stage 12 at the posterior end of the embryo and migrate anteriorly.
database_cross_reference: FlyBase:FBrf0007735
database_cross_reference: FlyBase:FBrf0064793
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0239227

somatic muscle cell
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: somatic muscle
subclass of: muscle cell
subclass of: syncytium
subclass of: Restriction
  on property: part of
  some values from: somatic muscle
definition: Muscle cell that serves to change the position of some part of the body. These cells are usually attached to the body wall. Fibers of somatic muscles are multinucleate, with the contractile material grouped into fibrils.
database_cross_reference: CL:0008004
has exact synonym: Somatic and visceral muscles appear striated (Miller, 1950).
has exact synonym: skeletal muscle cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005073
in subset: cur

Axiom
annotated source: somatic muscle cell
annotated property: definition
annotated target: Muscle cell that serves to change the position of some part of the body. These cells are usually attached to the body wall. Fibers of somatic muscles are multinucleate, with the contractile material grouped into fibrils.
database_cross_reference: FlyBase:FBrf0007735
database_cross_reference: FlyBase:FBrf0239227
database_cross_reference: FlyBase:FBrf0239342

muscle cell
type: Class
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: muscle system
definition: Somatic, contractile cell that makes up a muscle. It is formed by several fusion events between fusion competent myoblasts and one founder cell.
database_cross_reference: CL:0000187
has OBO namespace: fly_anatomy.ontology
has related synonym: muscle fiber
has related synonym: myofiber
has related synonym: myofibril
id: FBbt:00005074
in subset: cur
in subset: scrnaseq slim
comment: In contrast to vertebrates, in Drosophila embryos and larva, each muscle is a single myotube (Maqbool and Jagla, 2007).

Axiom
annotated source: muscle cell
annotated property: definition
annotated target: Somatic, contractile cell that makes up a muscle. It is formed by several fusion events between fusion competent myoblasts and one founder cell.
database_cross_reference: FlyBase:FBrf0051585
database_cross_reference: FlyBase:FBrf0205186
database_cross_reference: FlyBase:FBrf0217289

Axiom
annotated source: muscle cell
annotated property: hasRelatedSynonym
annotated target: muscle fiber
database_cross_reference: FlyBase:FBrf0217289

Axiom
annotated source: muscle cell
annotated property: hasRelatedSynonym
annotated target: myofiber
database_cross_reference: FlyBase:FBrf0217289

Axiom
annotated source: muscle cell
annotated property: hasRelatedSynonym
annotated target: myofibril
database_cross_reference: FlyBase:FBrf0212347

myoblast
type: Class
subclass of: somatic precursor cell
definition: Muscle progenitor cell.
database_cross_reference: CL:0000056
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005083
in subset: cur

Axiom
annotated source: myoblast
annotated property: definition
annotated target: Muscle progenitor cell.
database_cross_reference: FlyBase:FBrf0217289

apodeme
type: Class
subclass of: integumentary specialization
definition: A cuticular ingrowth of the exoskeleton, sometimes only a peg, frequently ridge-like, and often serving as a muscle attachment site. Does not generally correspond to superficial invaginations.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005091
in subset: FB gloss
in subset: cur

Axiom
annotated source: apodeme
annotated property: definition
annotated target: A cuticular ingrowth of the exoskeleton, sometimes only a peg, frequently ridge-like, and often serving as a muscle attachment site. Does not generally correspond to superficial invaginations.
database_cross_reference: FlyBase:FBrf0111704
database_cross_reference: FlyBase:FBrf0166419
database_cross_reference: FlyBase:FBrf0230923

nervous system
type: Class
subclass of: organ system
definition: All the nerve centers and nerve fibers in the central, visceral and peripheral nervous systems.
database_cross_reference: UBERON:0001016
database_cross_reference: VFB:FBbt_00005093
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005093
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: nervous system
annotated property: definition
annotated target: All the nerve centers and nerve fibers in the central, visceral and peripheral nervous systems.
database_cross_reference: FlyBase:FBrf0166419

central nervous system
type: Class
subclass of: organ system subdivision
subclass of: Restriction
  on property: part of
  some values from: nervous system
definition: Collective name for all the nerve centers and their connective in the insect's body. In the context of Drosophila refers to the part of the nervous system consisting of the brain and ventral ganglia.
database_cross_reference: UBERON:0001017
database_cross_reference: VFB:FBbt_00005094
has OBO namespace: fly_anatomy.ontology
has related synonym: CNS
id: FBbt:00005094
in subset: FB gloss
in subset: cur

Axiom
annotated source: central nervous system
annotated property: definition
annotated target: Collective name for all the nerve centers and their connective in the insect's body. In the context of Drosophila refers to the part of the nervous system consisting of the brain and ventral ganglia.
database_cross_reference: FBC:GG
database_cross_reference: FlyBase:FBrf0166419

brain
type: Class
subclass of: multi-tissue structure
subclass of: Restriction
  on property: part of
  some values from: central nervous system
definition: Anterodorsal portion of the central nervous system. The neuromeres considered to be part of the brain vary by stage. In the larva, the cerebral (supraesophageal) neuromeres, which form a bilateral pair of lobes, constitute the brain (Urbach and Technau, 2003; Li et al., 2014; Crews, 2019). During metamorphosis, the gnathal ganglion separates from the prothoracic neuromere and fuses with the supraesophageal ganglion, to become the ventral part of the adult brain (Ito et al., 2014; Hartenstein et al., 2018; Kendroud et al., 2018).
database_cross_reference: UBERON:0000955
database_cross_reference: VFB:FBbt_00005095
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005095
in subset: FB gloss
in subset: cur

Axiom
annotated source: brain
annotated property: definition
annotated target: Anterodorsal portion of the central nervous system. The neuromeres considered to be part of the brain vary by stage. In the larva, the cerebral (supraesophageal) neuromeres, which form a bilateral pair of lobes, constitute the brain (Urbach and Technau, 2003; Li et al., 2014; Crews, 2019). During metamorphosis, the gnathal ganglion separates from the prothoracic neuromere and fuses with the supraesophageal ganglion, to become the ventral part of the adult brain (Ito et al., 2014; Hartenstein et al., 2018; Kendroud et al., 2018).
database_cross_reference: FlyBase:FBrf0161020
database_cross_reference: FlyBase:FBrf0224194
database_cross_reference: FlyBase:FBrf0225812
database_cross_reference: FlyBase:FBrf0237251
database_cross_reference: FlyBase:FBrf0237252
database_cross_reference: FlyBase:FBrf0244240

ventral nerve cord
type: Class
subclass of: organ system subdivision
subclass of: Restriction
  on property: part of
  some values from: central nervous system
definition: Posterior region of the central nervous system containing the thoracic and abdominal neuromeres (Clark et al., 2018; Court et al., 2020). In the larva it is joined at its anterior end to the posterior gnathal ganglion (Eschbach and Zlatic, 2020). In the adult it is a separate entity, connected to the brain by the neck connective (Ito et al., 2014; Court et al., 2020).
database_cross_reference: UBERON:0000934
database_cross_reference: VFB:FBbt_00005097
has exact synonym: ventral nervous system
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005097
in subset: cur

Axiom
annotated source: ventral nerve cord
annotated property: definition
annotated target: Posterior region of the central nervous system containing the thoracic and abdominal neuromeres (Clark et al., 2018; Court et al., 2020). In the larva it is joined at its anterior end to the posterior gnathal ganglion (Eschbach and Zlatic, 2020). In the adult it is a separate entity, connected to the brain by the neck connective (Ito et al., 2014; Court et al., 2020).
database_cross_reference: FlyBase:FBrf0224194
database_cross_reference: FlyBase:FBrf0238752
database_cross_reference: FlyBase:FBrf0246815
database_cross_reference: FlyBase:FBrf0247585

peripheral nervous system
type: Class
subclass of: organ system subdivision
subclass of: Restriction
  on property: part of
  some values from: nervous system
definition: The outer parts of the nervous system that perform sensory and motor functions.
database_cross_reference: UBERON:0000010
database_cross_reference: VFB:FBbt_00005098
has OBO namespace: fly_anatomy.ontology
has related synonym: PNS
id: FBbt:00005098
in subset: FB gloss
in subset: cur

Axiom
annotated source: peripheral nervous system
annotated property: definition
annotated target: The outer parts of the nervous system that perform sensory and motor functions.
database_cross_reference: FBC:GG
database_cross_reference: FlyBase:FBrf0064796

neuron projection bundle
type: Class
equivalent class: Class
  intersection of: CARO_0001001
  intersection of: Restriction
    on property: part of
    some values from: Drosophila melanogaster
subclass of: CARO_0001001
subclass of: multi-cell-component structure
subclass of: Restriction
  on property: part of
  some values from: nervous system
subclass of: Restriction
  on property: characteristic of
  some values from: fasciculated
definition: A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses.
database_cross_reference: CARO:0001001
database_cross_reference: UBERON:0000122
database_cross_reference: VFB:FBbt_00005099
has exact synonym: nerve fiber bundle
has OBO namespace: fly_anatomy.ontology
has related synonym: nerve fiber
id: FBbt:00005099
in subset: cur
in subset: larval OF

Axiom
annotated source: neuron projection bundle
annotated property: definition
annotated target: A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

Axiom
annotated source: neuron projection bundle
annotated property: hasExactSynonym
annotated target: nerve fiber bundle
database_cross_reference: https://orcid.org/0000-0002-7073-9172

Axiom
annotated source: neuron projection bundle
annotated property: hasRelatedSynonym
annotated target: nerve fiber
database_cross_reference: https://orcid.org/0000-0002-7073-9172

tract
type: Class
subclass of: neuron projection bundle
subclass of: Restriction
  on property: part of
  some values from: tract neuropil
definition: A neuron projection bundle linking two or more synaptic neuropil domains or subdomains within the CNS.
database_cross_reference: UBERON:0001018
database_cross_reference: VFB:FBbt_00005100
has exact synonym: CNS tract
has narrow synonym: axon tract
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005100
in subset: cur
in subset: larval OF

Axiom
annotated source: tract
annotated property: definition
annotated target: A neuron projection bundle linking two or more synaptic neuropil domains or subdomains within the CNS.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

nerve
type: Class
equivalent class: Class
  intersection of: neuron projection bundle
  intersection of: Restriction
    on property: part of
    some values from: peripheral nervous system
subclass of: neuron projection bundle
subclass of: Restriction
  on property: part of
  some values from: peripheral nervous system
definition: A bundle of axons connecting the peripheral nervous system to the central nervous system.
database_cross_reference: UBERON:0001021
database_cross_reference: VFB:FBbt_00005105
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005105
in subset: FB gloss
in subset: cur
in subset: larval OF

Axiom
annotated source: nerve
annotated property: definition
annotated target: A bundle of axons connecting the peripheral nervous system to the central nervous system.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

neuron
type: Class
equivalent class: Class
  intersection of: CL_0000540
  intersection of: Restriction
    on property: part of
    some values from: Drosophila melanogaster
subclass of: CL_0000540
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: nervous system
definition: Electrically active cell of the nervous system which has an axon and/or dendrite and which is synapsed with other cells and/or has other cells synapsed to it.
database_cross_reference: CL:0000540
database_cross_reference: VFB:FBbt_00005106
has OBO namespace: fly_anatomy.ontology
has related synonym: nerve cell
id: FBbt:00005106
in subset: EmbDevSlim
in subset: FB gloss
in subset: cur
in subset: larval OF
in subset: scrnaseq slim

Axiom
annotated source: neuron
annotated property: definition
annotated target: Electrically active cell of the nervous system which has an axon and/or dendrite and which is synapsed with other cells and/or has other cells synapsed to it.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

motor neuron
type: Class
subclass of: efferent neuron
subclass of: Restriction
  on property: sends synaptic output to cell
  some values from: muscle cell
definition: A neuron that sends movement impulses to the muscle system.
database_cross_reference: CL:0000100
database_cross_reference: VFB:FBbt_00005123
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005123
in subset: EmbDevSlim
in subset: FB gloss
in subset: cur
in subset: scrnaseq slim

Axiom
annotated source: motor neuron
annotated property: definition
annotated target: A neuron that sends movement impulses to the muscle system.
database_cross_reference: FBC:GG

sensory neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: capable of
    some values from: GO_0050906
subclass of: CL_0000101
subclass of: sensory system neuron
definition: Any neuron (FBbt:00005106) that is capable of some detection of stimulus involved in sensory perception (GO:0050906).
database_cross_reference: CL:0000101
database_cross_reference: VFB:FBbt_00005124
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005124
in subset: cur
in subset: larval OF
in subset: scrnaseq slim

Axiom
annotated source: sensory neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that is capable of some detection of stimulus involved in sensory perception (GO:0050906).
database_cross_reference: FBC:Autogenerated

neurosecretory neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: capable of
    some values from: GO_0046879
subclass of: CL_0000165
subclass of: neuron
definition: Any neuron (FBbt:00005106) that is capable of some hormone secretion (GO:0046879).
database_cross_reference: CL:0000165
database_cross_reference: VFB:FBbt_00005130
has exact synonym: NSN
has exact synonym: neurosecretory cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005130
in subset: cur

Axiom
annotated source: neurosecretory neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that is capable of some hormone secretion (GO:0046879).
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: neurosecretory neuron
annotated property: hasExactSynonym
annotated target: NSN
database_cross_reference: FlyBase:FBrf0134726

ganglion
type: Class
subclass of: multi-tissue structure
subclass of: Restriction
  on property: part of
  some values from: nervous system
definition: Any of a number of aggregations of neurons, glial cells and their processes, and surrounded by a glial cell and connective tissue sheath (plural: ganglia).
database_cross_reference: VFB:FBbt_00005137
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005137
in subset: FB gloss
in subset: cur
in subset: larval OF

neuropil
type: Class
subclass of: multi-cell-component structure
subclass of: Restriction
  on property: part of
  some values from: central nervous system
definition: Multi-cell component structure of the central nervous system consisting largely of neuron projections (tracts and synaptic neuropil domains) and associated glial cells. This corresponds to the part of the CNS that is enclosed by the cortex.
has alternative id: FBbt:00007351
database_cross_reference: UBERON:0002606
database_cross_reference: VFB:FBbt_00005139
has OBO namespace: fly_anatomy.ontology
has related synonym: neuropil
id: FBbt:00005139

Axiom
annotated source: neuropil
annotated property: definition
annotated target: Multi-cell component structure of the central nervous system consisting largely of neuron projections (tracts and synaptic neuropil domains) and associated glial cells. This corresponds to the part of the CNS that is enclosed by the cortex.
database_cross_reference: FlyBase:FBrf0224194

glial cell
type: Class
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: nervous system
subclass of: Restriction
  on property: develops from
  some values from: glioblast
definition: A supporting cell of the nervous system.
database_cross_reference: CL:0000125
database_cross_reference: VFB:FBbt_00005144
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005144
in subset: FB gloss
in subset: cur
in subset: scrnaseq slim

Axiom
annotated source: glial cell
annotated property: definition
annotated target: A supporting cell of the nervous system.
database_cross_reference: FBC:GG

glioblast
type: Class
subclass of: neuroblast
definition: Progenitor cell that gives rise only to glial cells and not neurons (Hartenstein, 2011).
database_cross_reference: CL:0000340
database_cross_reference: VFB:FBbt_00005145
has exact synonym: glial precursor cell
has OBO namespace: fly_anatomy.ontology
has related synonym: GP
id: FBbt:00005145
in subset: cur

Axiom
annotated source: glioblast
annotated property: definition
annotated target: Progenitor cell that gives rise only to glial cells and not neurons (Hartenstein, 2011).
database_cross_reference: FlyBase:FBrf0064795
database_cross_reference: FlyBase:FBrf0214261

Axiom
annotated source: glioblast
annotated property: hasRelatedSynonym
annotated target: GP
database_cross_reference: FlyBase:FBrf0055900

neuroblast
type: Class
subclass of: somatic stem cell
IAO_0000028: NB
definition: Precursor of the central nervous system that derives from the neurogenic region of the ectoderm or the mesectoderm (Doe, 1992; Schmid et al., 1999; Crews, 2019). It produces neurons and/or glia (Doe, 1992; Beckervordersandforth et al., 2008). Neuroblasts may also divide during adult life to regenerate the adult brain (Fernandez-Hernandez et al., 2013).
database_cross_reference: CL:0000338
database_cross_reference: VFB:FBbt_00005146
has exact synonym: NB
has exact synonym: neural stem cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005146
in subset: EmbDevSlim
in subset: FB gloss
in subset: cur
comment: Adult neurogenesis demonstrated in the adult optic lobe in response to injury (Fernandez-Hernandez et al., 2013).

Axiom
annotated source: neuroblast
annotated property: definition
annotated target: Precursor of the central nervous system that derives from the neurogenic region of the ectoderm or the mesectoderm (Doe, 1992; Schmid et al., 1999; Crews, 2019). It produces neurons and/or glia (Doe, 1992; Beckervordersandforth et al., 2008). Neuroblasts may also divide during adult life to regenerate the adult brain (Fernandez-Hernandez et al., 2013).
database_cross_reference: FlyBase:FBrf0055900
database_cross_reference: FlyBase:FBrf0112030
database_cross_reference: FlyBase:FBrf0205499
database_cross_reference: FlyBase:FBrf0222020
database_cross_reference: FlyBase:FBrf0244240

Axiom
annotated source: neuroblast
annotated property: hasExactSynonym
annotated target: NB
has synonym type: VFB SYMBOL

Axiom
annotated source: neuroblast
annotated property: hasExactSynonym
annotated target: neural stem cell
database_cross_reference: FlyBase:FBrf0211926

surface glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: perineurium
subclass of: glial cell
subclass of: Restriction
  on property: part of
  some values from: perineurium
definition: Any glial cell that is part of (either layer of) the perineurium, which surrounds the entire nervous system (Kremer et al., 2017).
database_cross_reference: VFB:FBbt_00005152
has exact synonym: glial cell of the perineurium
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005152
in subset: cur

Axiom
annotated source: surface glial cell
annotated property: definition
annotated target: Any glial cell that is part of (either layer of) the perineurium, which surrounds the entire nervous system (Kremer et al., 2017).
database_cross_reference: FlyBase:FBrf0234767

perineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: perineurial glial sheath
subclass of: surface glial cell
subclass of: Restriction
  on property: part of
  some values from: perineurial glial sheath
definition: Glial cell that forms part of the perineurial sheath forming the outer layer of the nervous system. These cells divide extensively to increase in number as the nervous system expands during development (Kremer et al., 2017).
database_cross_reference: VFB:FBbt_00005153
has exact synonym: PNG
has exact synonym: outer perineural sheath cell
has exact synonym: perineurial sheath cell
has exact synonym: perineurial sheath glial cell
has OBO namespace: fly_anatomy.ontology
has related synonym: apical glial cell
has related synonym: perineural cell
has related synonym: perineurial glia
id: FBbt:00005153
in subset: cur

Axiom
annotated source: perineurial glial cell
annotated property: definition
annotated target: Glial cell that forms part of the perineurial sheath forming the outer layer of the nervous system. These cells divide extensively to increase in number as the nervous system expands during development (Kremer et al., 2017).
database_cross_reference: FlyBase:FBrf0234767

Axiom
annotated source: perineurial glial cell
annotated property: hasExactSynonym
annotated target: PNG
database_cross_reference: FlyBase:FBrf0243081

sense organ
type: Class
equivalent class: Class
  intersection of: multicellular structure
  intersection of: Restriction
    on property: capable of
    some values from: GO_0050906
subclass of: BFO_0000040
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: sensory system
subclass of: Restriction
  on property: capable of
  some values from: GO_0050906
definition: Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system.
database_cross_reference: UBERON:0000020
database_cross_reference: VFB:FBbt_00005155
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005155
in subset: FB gloss
in subset: cur
in subset: hidden assertion
in subset: larval OF

Axiom
annotated source: sense organ
annotated property: definition
annotated target: Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

sensory organ cell
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: overlaps
    some values from: sense organ
subclass of: somatic cell
subclass of: Restriction
  on property: overlaps
  some values from: sense organ
definition: Any somatic cell (FBbt:00100318) that overlaps some sense organ (FBbt:00005155).
has OBO namespace: fly_anatomy.ontology
has related synonym: SOC
id: FBbt:00005163
in subset: cur
in subset: scrnaseq slim

Axiom
annotated source: sensory organ cell
annotated property: definition
annotated target: Any somatic cell (FBbt:00100318) that overlaps some sense organ (FBbt:00005155).
database_cross_reference: FBC:Autogenerated

external sensory organ precursor cell
type: Class
subclass of: peripheral sensory precursor cell
definition: Precursor cell that gives rise to at least one cell of an external sensory organ.
has broad synonym: es cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005164
in subset: cur

Axiom
annotated source: external sensory organ precursor cell
annotated property: definition
annotated target: Precursor cell that gives rise to at least one cell of an external sensory organ.
database_cross_reference: FlyBase:FBrf0111371

Axiom
annotated source: external sensory organ precursor cell
annotated property: hasBroadSynonym
annotated target: es cell
database_cross_reference: FlyBase:FBrf0045361

external sensory organ precursor cell I
type: Class
subclass of: sensory mother cell
subclass of: external sensory organ precursor cell
definition: First-order precursor cell: mother of all the clonally related cells of an external sensory organ.
has broad synonym: SOP
has exact synonym: external sensory organ sensory mother cell
has OBO namespace: fly_anatomy.ontology
has related synonym: SOPI
has related synonym: founder cell
id: FBbt:00005165
in subset: cur

Axiom
annotated source: external sensory organ precursor cell I
annotated property: definition
annotated target: First-order precursor cell: mother of all the clonally related cells of an external sensory organ.
database_cross_reference: FlyBase:FBrf0049554
database_cross_reference: FlyBase:FBrf0111371
database_cross_reference: FlyBase:FBrf0158845

Axiom
annotated source: external sensory organ precursor cell I
annotated property: hasBroadSynonym
annotated target: SOP
database_cross_reference: FlyBase:FBrf0241429

external sensory organ
type: Class
subclass of: sense organ
definition: Sensory organ that has external structures that detect mechanical or chemical stimuli.
database_cross_reference: UBERON:6005168
database_cross_reference: VFB:FBbt_00005168
has exact synonym: eo
has exact synonym: es
has OBO namespace: fly_anatomy.ontology
has related synonym: sensillum
id: FBbt:00005168
in subset: cur
in subset: larval OF

Axiom
annotated source: external sensory organ
annotated property: definition
annotated target: Sensory organ that has external structures that detect mechanical or chemical stimuli.
database_cross_reference: FlyBase:FBrf0064796

Axiom
annotated source: external sensory organ
annotated property: hasExactSynonym
annotated target: es
database_cross_reference: FlyBase:FBrf0064796

Keilin organ
type: Class
subclass of: eo-type sensillum
subclass of: embryonic/larval thoracic sensillum
subclass of: ectodermal derivative
subclass of: Restriction
  on property: part of
  some values from: larval thoracic ventral sensory cluster
subclass of: Restriction
  on property: develops from
  some values from: thoracic limb primordium
definition: A sensillum of the ventral sensory cluster group of the embryonic/larval thorax whose external sensory structure consists of a cluster of three hairs. It is innervated by 5 dendrites.
database_cross_reference: VFB:FBbt_00005198
has exact synonym: KO
has exact synonym: Keilin's organ
has OBO namespace: fly_anatomy.ontology
has related synonym: Fusstummelsinnesorgan
has related synonym: trihair
id: FBbt:00005198
in subset: cur

Axiom
annotated source: Keilin organ
annotated property: definition
annotated target: A sensillum of the ventral sensory cluster group of the embryonic/larval thorax whose external sensory structure consists of a cluster of three hairs. It is innervated by 5 dendrites.
database_cross_reference: FlyBase:FBrf0045359
database_cross_reference: FlyBase:FBrf0089570

Axiom
annotated source: Keilin organ
annotated property: hasExactSynonym
annotated target: KO
database_cross_reference: FlyBase:FBrf0089570

Axiom
annotated source: Keilin organ
annotated property: hasExactSynonym
annotated target: Keilin's organ
database_cross_reference: FlyBase:FBrf0089570

pre-blastoderm embryo
type: Class
subclass of: embryo
definition: Embryo prior to the formation of the syncitial blastoderm, shortly after nuclear cycle 9 (Foe and Alberts, 1983; Jaeger et al., 2012). This period lasts from fertilization to the end of embryonic stage 3 (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FBdv:00005290
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005290

Axiom
annotated source: pre-blastoderm embryo
annotated property: definition
annotated target: Embryo prior to the formation of the syncitial blastoderm, shortly after nuclear cycle 9 (Foe and Alberts, 1983; Jaeger et al., 2012). This period lasts from fertilization to the end of embryonic stage 3 (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0039741
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0220623

stage 1 embryo
type: Class
subclass of: cleavage stage embryo
subclass of: pre-blastoderm embryo
definition: Nuclear divisions 1 and 2. Duration at 25 degrees C: approximately 25 minutes (0-25 minutes after egg laying).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005291
in subset: deprecated
comment: DEPRECATION WARNING.

Axiom
annotated source: stage 1 embryo
annotated property: definition
annotated target: Nuclear divisions 1 and 2. Duration at 25 degrees C: approximately 25 minutes (0-25 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

stage 2 embryo
type: Class
subclass of: cleavage stage embryo
subclass of: pre-blastoderm embryo
subclass of: Restriction
  on property: develops from
  some values from: stage 1 embryo
definition: Nuclear divisions 3-8. The egg cytoplasm contracts producing a clear separation from the vitelline membrane and empty spaces at the anterior and posterior. The cleavage nuclei migrate towards the periphery. Duration at 25 degrees C approximately 40 minutes (25-65 minutes AEL).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005293
in subset: deprecated
comment: DEPRECATION WARNING.

Axiom
annotated source: stage 2 embryo
annotated property: definition
annotated target: Nuclear divisions 3-8. The egg cytoplasm contracts producing a clear separation from the vitelline membrane and empty spaces at the anterior and posterior. The cleavage nuclei migrate towards the periphery. Duration at 25 degrees C approximately 40 minutes (25-65 minutes AEL).
database_cross_reference: FlyBase:FBrf0089570

stage 3 embryo
type: Class
subclass of: cleavage stage embryo
subclass of: syncytial blastoderm embryo
subclass of: Restriction
  on property: develops from
  some values from: stage 2 embryo
definition: Nuclear division 9. The cleavage nuclei complete there migration to the periphery. Polar buds form at the posterior pole and divide once. Duration at 25 degrees C: approximately 15 minutes (65-80 minutes after egg laying).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005301
in subset: deprecated
comment: DEPRECATION WARNING.

Axiom
annotated source: stage 3 embryo
annotated property: definition
annotated target: Nuclear division 9. The cleavage nuclei complete there migration to the periphery. Polar buds form at the posterior pole and divide once. Duration at 25 degrees C: approximately 15 minutes (65-80 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

blastoderm embryo
type: Class
subclass of: embryo
definition: Embryo during the blastoderm stage, where most nuclei are found at the cortex (periphery) of the embryo (Foe and Alberts, 1983; Jaeger et al., 2012). The blastoderm stage begins shortly after completion of the ninth cleavage division and lasts until the onset of gastrulation, including cleavage cycles 10-14A (Foe and Alberts, 1983; Jaeger et al., 2012). This corresponds to embryonic stages 4 (syncitial blastoderm stage) and 5 (cellular blastoderm stage) (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FBdv:00005304
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005304

Axiom
annotated source: blastoderm embryo
annotated property: definition
annotated target: Embryo during the blastoderm stage, where most nuclei are found at the cortex (periphery) of the embryo (Foe and Alberts, 1983; Jaeger et al., 2012). The blastoderm stage begins shortly after completion of the ninth cleavage division and lasts until the onset of gastrulation, including cleavage cycles 10-14A (Foe and Alberts, 1983; Jaeger et al., 2012). This corresponds to embryonic stages 4 (syncitial blastoderm stage) and 5 (cellular blastoderm stage) (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0039741
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0220623

syncytial blastoderm embryo
type: Class
subclass of: blastoderm embryo
definition: A blastoderm embryo prior to cellularization (corresponds to embryonic stages 3 and 4).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005305
in subset: cur
in subset: deprecated
comment: DEPRECATION WARNING.

Axiom
annotated source: syncytial blastoderm embryo
annotated property: definition
annotated target: A blastoderm embryo prior to cellularization (corresponds to embryonic stages 3 and 4).
database_cross_reference: FBC:GG
database_cross_reference: https://orcid.org/0000-0002-7073-9172

stage 4 embryo
type: Class
subclass of: cleavage stage embryo
subclass of: syncytial blastoderm embryo
subclass of: Restriction
  on property: develops from
  some values from: stage 3 embryo
definition: Nuclear division 10-13. Polar buds divide twice and become tightly grouped at the posterior pole by the end of this stage. Nuclei visible at the rim of the embryo. Stage 4 ends with the beginning of cellularization. Duration at 25 degrees C: approximately 50 minutes (80-130 minutes after egg laying).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005306
in subset: deprecated
comment: DEPRECATION WARNING.

Axiom
annotated source: stage 4 embryo
annotated property: definition
annotated target: Nuclear division 10-13. Polar buds divide twice and become tightly grouped at the posterior pole by the end of this stage. Nuclei visible at the rim of the embryo. Stage 4 ends with the beginning of cellularization. Duration at 25 degrees C: approximately 50 minutes (80-130 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

stage 5 embryo
type: Class
subclass of: blastoderm embryo
subclass of: Restriction
  on property: develops from
  some values from: stage 4 embryo
definition: Stage 5 begins when cellularization starts. Near the end of this stage the pole cells begin to migrate dorsally and ventral midline cells acquire an irregular, wavy appearance. Stage 5 ends when ventral furrow formation becomes apparent. Duration at 25 degrees C: approximately 40 minutes (130-170 minutes after egg laying).
has OBO namespace: fly_anatomy.ontology
has related synonym: cellular blastoderm embryo
id: FBbt:00005311
in subset: deprecated
comment: DEPRECATION WARNING.

Axiom
annotated source: stage 5 embryo
annotated property: definition
annotated target: Stage 5 begins when cellularization starts. Near the end of this stage the pole cells begin to migrate dorsally and ventral midline cells acquire an irregular, wavy appearance. Stage 5 ends when ventral furrow formation becomes apparent. Duration at 25 degrees C: approximately 40 minutes (130-170 minutes after egg laying).
database_cross_reference: FBC:MA
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: https://orcid.org/0000-0002-7073-9172

gastrula embryo
type: Class
subclass of: embryo
subclass of: Restriction
  on property: develops from
  some values from: blastoderm embryo
definition: Embryo that is in the process of gastrulation (encompassing embryonic stages 6-8), during which complex morphogenetic movements result in the formation of the three germ layers; ectoderm, mesoderm and endoderm (Hartenstein, 1993).
database_cross_reference: FBdv:00005317
database_cross_reference: UBERON:0004734
has exact synonym: gastrulation stage embryo
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005317

Axiom
annotated source: gastrula embryo
annotated property: definition
annotated target: Embryo that is in the process of gastrulation (encompassing embryonic stages 6-8), during which complex morphogenetic movements result in the formation of the three germ layers; ectoderm, mesoderm and endoderm (Hartenstein, 1993).
database_cross_reference: FlyBase:FBrf0064803

stage 6 embryo
type: Class
subclass of: gastrula embryo
subclass of: Restriction
  on property: develops from
  some values from: stage 5 embryo
definition: Stage 6 begins when the ventral furrow becomes apparent, an event which is followed rapidly by the formation of the cephalic furrow. Stage 6 ends when the pole cells have adopted a dorsal (horizontal) position at the posterior. Duration at 25 degrees C: approximately 10 minutes (170-180 minutes after egg laying).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005318
in subset: deprecated
comment: DEPRECATION WARNING.

Axiom
annotated source: stage 6 embryo
annotated property: definition
annotated target: Stage 6 begins when the ventral furrow becomes apparent, an event which is followed rapidly by the formation of the cephalic furrow. Stage 6 ends when the pole cells have adopted a dorsal (horizontal) position at the posterior. Duration at 25 degrees C: approximately 10 minutes (170-180 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

stage 7 embryo
type: Class
subclass of: gastrula embryo
subclass of: Restriction
  on property: develops from
  some values from: stage 6 embryo
definition: Stage 7 begins when the pole cells have adopted a dorsal (horizontal) position at the posterior. Invagination of the anterior and posterior midgut and hindgut follows. The 'discoid plate' carrying the pole cells forms a pocket. Transverse furrows (dorsal folds) form on the dorsal surface. This stage ends when the anterior wall of the amnioproctodeal invagination starts moving anteriorly and the pole cells are no longer visible externally. Duration at 25 degrees C: approximately 10 minutes (180-190 minutes after egg laying).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005319
in subset: deprecated
comment: DEPRECATION WARNING.

Axiom
annotated source: stage 7 embryo
annotated property: definition
annotated target: Stage 7 begins when the pole cells have adopted a dorsal (horizontal) position at the posterior. Invagination of the anterior and posterior midgut and hindgut follows. The 'discoid plate' carrying the pole cells forms a pocket. Transverse furrows (dorsal folds) form on the dorsal surface. This stage ends when the anterior wall of the amnioproctodeal invagination starts moving anteriorly and the pole cells are no longer visible externally. Duration at 25 degrees C: approximately 10 minutes (180-190 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: https://orcid.org/0000-0002-7073-9172

extended germ band embryo
type: Class
subclass of: embryo
subclass of: Restriction
  on property: develops from
  some values from: gastrula embryo
definition: Embryo during stages 9-12.
database_cross_reference: FBdv:00005321
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005321

Axiom
annotated source: extended germ band embryo
annotated property: definition
annotated target: Embryo during stages 9-12.
database_cross_reference: FlyBase:FBrf0229323
database_cross_reference: https://orcid.org/0000-0002-7073-9172

stage 8 embryo
type: Class
subclass of: gastrula embryo
subclass of: Restriction
  on property: develops from
  some values from: stage 7 embryo
definition: Stage 8 starts with the rapid phase of germ band extension and ends with the beginning of mesodermal segmentation. By the end of this stage germ band extension has progressed to the point where the proctodeal opening is at about 60% egg length and the dorsal folds (transverse furrows) are no longer visible. Duration at 25 degrees C: approximately 30 minutes (190-220 minutes after egg laying).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005322
in subset: deprecated
comment: DEPRECATION WARNING.

Axiom
annotated source: stage 8 embryo
annotated property: definition
annotated target: Stage 8 starts with the rapid phase of germ band extension and ends with the beginning of mesodermal segmentation. By the end of this stage germ band extension has progressed to the point where the proctodeal opening is at about 60% egg length and the dorsal folds (transverse furrows) are no longer visible. Duration at 25 degrees C: approximately 30 minutes (190-220 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: https://orcid.org/0000-0002-7073-9172

dorsal closure embryo
type: Class
subclass of: embryo
subclass of: Restriction
  on property: develops from
  some values from: late extended germ band embryo
definition: Embryo during the dorsal closure stage, which corresponds to stages 13-15 (Hartenstein, 1993; Campos-Ortega and Hartenstein, 1997). Dorsal closure occurs by extension of the dorsal epidermal primordium on either side, leading to fusion at the dorsal midline (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FBdv:00005331
has OBO namespace: fly_anatomy.ontology
has related synonym: contracted germ band embryo
has related synonym: head involution embryo
id: FBbt:00005331

Axiom
annotated source: dorsal closure embryo
annotated property: definition
annotated target: Embryo during the dorsal closure stage, which corresponds to stages 13-15 (Hartenstein, 1993; Campos-Ortega and Hartenstein, 1997). Dorsal closure occurs by extension of the dorsal epidermal primordium on either side, leading to fusion at the dorsal midline (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0064803
database_cross_reference: FlyBase:FBrf0089570

foregut
type: Class
subclass of: multi-tissue structure
subclass of: gut section
definition: An anterior part of the alimentary canal derived from the ectoderm. It is lined on its luminal side by a impermeable cuticle. The proventriculus (cardia) is located at the junction between the foregut and midgut.
database_cross_reference: UBERON:0001041
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005379
in subset: FB gloss
in subset: cur

Axiom
annotated source: foregut
annotated property: definition
annotated target: An anterior part of the alimentary canal derived from the ectoderm. It is lined on its luminal side by a impermeable cuticle. The proventriculus (cardia) is located at the junction between the foregut and midgut.
database_cross_reference: FBC:GG

salivary gland
type: Class
subclass of: gland
subclass of: Restriction
  on property: part of
  some values from: foregut
subclass of: Restriction
  on property: capable of
  some values from: GO_0046541
definition: Paired secretory organ connected to the atrium via the salivary duct. It is essentially composed of two cell types: cuboidal epithelial duct cells that form tubes connecting the secretory cells to the larval mouth; and secretory cells that synthesize and secrete high levels of protein (Andrew et al., 2000).
database_cross_reference: UBERON:0001044
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005382
in subset: cur

Axiom
annotated source: salivary gland
annotated property: definition
annotated target: Paired secretory organ connected to the atrium via the salivary duct. It is essentially composed of two cell types: cuboidal epithelial duct cells that form tubes connecting the secretory cells to the larval mouth; and secretory cells that synthesize and secrete high levels of protein (Andrew et al., 2000).
database_cross_reference: FlyBase:FBrf0064792
database_cross_reference: FlyBase:FBrf0126988

hindgut
type: Class
subclass of: multi-tissue structure
subclass of: gut section
subclass of: Restriction
  on property: expresses
  some values from: FBgn0011723
definition: A posterior part of the alimentary canal derived from the ectoderm. It extends anteriorly from close to the point of attachment of the Malpighian tubules to the anus. It is lined on its luminal side by an impermeable cuticle (Skaer, 1993).
database_cross_reference: UBERON:0001046
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005384
in subset: FB gloss
in subset: cur
comment: Adult and larval hindguts express the transcription factor brachyenteron (Sawyer et al., 2017).

Axiom
annotated source: hindgut
annotated property: definition
annotated target: A posterior part of the alimentary canal derived from the ectoderm. It extends anteriorly from close to the point of attachment of the Malpighian tubules to the anus. It is lined on its luminal side by an impermeable cuticle (Skaer, 1993).
database_cross_reference: FBC:GG
database_cross_reference: FlyBase:FBrf0064792

embryonic nervous system of thorax
type: Class
subclass of: tagmatic subdivision of organ system
subclass of: Restriction
  on property: part of
  some values from: embryonic thorax
subclass of: Restriction
  on property: part of
  some values from: presumptive embryonic/larval nervous system
definition: The portion of the embryonic nervous system that is part of the thorax.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005387
in subset: cur

Axiom
annotated source: embryonic nervous system of thorax
annotated property: definition
annotated target: The portion of the embryonic nervous system that is part of the thorax.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

embryonic nervous system of abdomen
type: Class
subclass of: tagmatic subdivision of organ system
subclass of: Restriction
  on property: part of
  some values from: embryonic abdomen
subclass of: Restriction
  on property: part of
  some values from: presumptive embryonic/larval nervous system
definition: The portion of the embryonic nervous system that is part of the abdomen.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005388
in subset: cur

Axiom
annotated source: embryonic nervous system of abdomen
annotated property: definition
annotated target: The portion of the embryonic nervous system that is part of the abdomen.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

presumptive embryonic/larval integumentary system
type: Class
subclass of: presumptive embryonic/larval system
definition: The sum of all the structures in the embryo that will develop into the embryonic/larval integumentary system.
has OBO namespace: fly_anatomy.ontology
has related synonym: embryonic integumentary system
id: FBbt:00005392
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: presumptive embryonic/larval integumentary system
annotated property: definition
annotated target: The sum of all the structures in the embryo that will develop into the embryonic/larval integumentary system.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

Axiom
annotated source: presumptive embryonic/larval integumentary system
annotated property: hasRelatedSynonym
annotated target: embryonic integumentary system
database_cross_reference: https://orcid.org/0000-0002-7073-9172

larval integumentary system
type: Class
equivalent class: Class
  intersection of: integumentary system
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: integumentary system
subclass of: Restriction
  on property: part of
  some values from: larva
definition: Integumentary system of the late embryo or larva.
database_cross_reference: UBERON:6005393
has exact synonym: embryonic/larval integumentary system
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005393
in subset: cur

Axiom
annotated source: larval integumentary system
annotated property: definition
annotated target: Integumentary system of the late embryo or larva.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

adult integumentary system
type: Class
equivalent class: Class
  intersection of: integumentary system
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: integumentary system
subclass of: Restriction
  on property: part of
  some values from: adult
definition: Integumentary system of the adult.
has alternative id: FBbt:00004474
database_cross_reference: UBERON:6005396
has exact synonym: adult integument
has OBO namespace: fly_anatomy.ontology
has related synonym: adult external
id: FBbt:00005396
in subset: cur

Axiom
annotated source: adult integumentary system
annotated property: definition
annotated target: Integumentary system of the adult.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

embryonic epidermis
type: Class
subclass of: epidermis
subclass of: Restriction
  on property: part of
  some values from: presumptive embryonic/larval integumentary system
definition: Epidermis of the embryo.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005397
in subset: cur

Axiom
annotated source: embryonic epidermis
annotated property: definition
annotated target: Epidermis of the embryo.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

embryonic/larval epidermis
type: Class
subclass of: epidermis
subclass of: Restriction
  on property: part of
  some values from: larval integumentary system
subclass of: Restriction
  on property: develops from
  some values from: embryonic epidermis
definition: Epidermis of the late embryo or larva.
has exact synonym: larval epidermis
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005398
in subset: cur

Axiom
annotated source: embryonic/larval epidermis
annotated property: definition
annotated target: Epidermis of the late embryo or larva.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

adult epidermis
type: Class
subclass of: epidermis
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: adult integumentary system
subclass of: Restriction
  on property: develops from
  some values from: imaginal disc
definition: Epidermis of the adult.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005401
in subset: cur

Axiom
annotated source: adult epidermis
annotated property: definition
annotated target: Epidermis of the adult.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

anlage in statu nascendi
type: Class
subclass of: developing embryonic structure
definition: Domain that is in the process of forming an anlage and does not yet coincide 1:1 with a mature structure. These domains can be identified based on the expression of genes characteristic of the corresponding anlagen and are typically found in the early blastoderm.
has OBO namespace: fly_anatomy.ontology
has related synonym: A0
id: FBbt:00005413
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: anlage in statu nascendi
annotated property: definition
annotated target: Domain that is in the process of forming an anlage and does not yet coincide 1:1 with a mature structure. These domains can be identified based on the expression of genes characteristic of the corresponding anlagen and are typically found in the early blastoderm.
database_cross_reference: FlyBase:FBrf0155831
database_cross_reference: FlyBase:FBrf0178740

foregut anlage in statu nascendi
type: Class
subclass of: developing embryonic structure
subclass of: Restriction
  on property: part of
  some values from: stage 5 embryo
subclass of: Restriction
  on property: part of
  some values from: anterior ectoderm anlage
definition: Anlage in statu nascendi of the foregut in a stage 5 embryo that will give rise to the foregut anlage.
has exact synonym: Asn FoG
has OBO namespace: fly_anatomy.ontology
has related synonym: A0FoG
id: FBbt:00005423
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: foregut anlage in statu nascendi
annotated property: definition
annotated target: Anlage in statu nascendi of the foregut in a stage 5 embryo that will give rise to the foregut anlage.
database_cross_reference: FBC:VH

Axiom
annotated source: foregut anlage in statu nascendi
annotated property: hasExactSynonym
annotated target: Asn FoG
database_cross_reference: https://orcid.org/0000-0002-7073-9172

hindgut anlage in statu nascendi
type: Class
subclass of: anlage in statu nascendi
subclass of: Restriction
  on property: part of
  some values from: stage 5 embryo
definition: Anlage in statu nascendi of the hindgut in a stage 5 embryo that will give rise to the hindgut anlage.
has exact synonym: Asn iHiGP
has OBO namespace: fly_anatomy.ontology
has related synonym: A0HiGP
id: FBbt:00005424
in subset: cur

Axiom
annotated source: hindgut anlage in statu nascendi
annotated property: definition
annotated target: Anlage in statu nascendi of the hindgut in a stage 5 embryo that will give rise to the hindgut anlage.
database_cross_reference: FBC:VH

Axiom
annotated source: hindgut anlage in statu nascendi
annotated property: hasExactSynonym
annotated target: Asn iHiGP
database_cross_reference: https://orcid.org/0000-0001-5948-3092

anlage
type: Class
subclass of: portion of tissue
subclass of: developing material anatomical entity
definition: Population of contiguous cells, typically arranged in one plane, that is morphologically indistinct from surrounding cells, but already corresponds to a later organ/tissue and can be identified based on gene expression or lineage tracing (Tomancak et al., 2002; Hartenstein, 2004).
database_cross_reference: UBERON:0007688
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005426
in subset: EmbDevSlim
in subset: FB gloss
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: anlage
annotated property: definition
annotated target: Population of contiguous cells, typically arranged in one plane, that is morphologically indistinct from surrounding cells, but already corresponds to a later organ/tissue and can be identified based on gene expression or lineage tracing (Tomancak et al., 2002; Hartenstein, 2004).
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0155831
database_cross_reference: FlyBase:FBrf0178740

ectoderm anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: Restriction
  on property: develops into
  some values from: ectoderm
definition: Cells of the early embryo that will become the ectoderm following gastrulation (Campos-Ortega and Hartenstein, 1997). It remains at the surface of the embryo as the endodermal and mesodermal anlagen invaginate (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: UBERON:6005427
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005427
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: ectoderm anlage
annotated property: definition
annotated target: Cells of the early embryo that will become the ectoderm following gastrulation (Campos-Ortega and Hartenstein, 1997). It remains at the surface of the embryo as the endodermal and mesodermal anlagen invaginate (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0155831
database_cross_reference: FlyBase:FBrf0244630

dorsal ectoderm anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: Restriction
  on property: part of
  some values from: ectoderm anlage
subclass of: Restriction
  on property: develops into
  some values from: dorsal ectoderm
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005428
in subset: cur

foregut anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: Restriction
  on property: part of
  some values from: anterior ectoderm
subclass of: Restriction
  on property: develops from
  some values from: foregut anlage in statu nascendi
subclass of: Restriction
  on property: develops into
  some values from: embryonic foregut
definition: Anlage of the embryonic foregut.
has OBO namespace: fly_anatomy.ontology
has related synonym: AFoG
id: FBbt:00005431
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: foregut anlage
annotated property: definition
annotated target: Anlage of the embryonic foregut.
database_cross_reference: FBC:VH

salivary gland duct anlage
type: Class
subclass of: anlage
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: develops into
  some values from: salivary gland duct primordium
definition: A(n) anlage that develops into some salivary gland duct primordium.
has OBO namespace: fly_anatomy.ontology
has related synonym: A SalD
id: FBbt:00005432
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: salivary gland duct anlage
annotated property: definition
annotated target: A(n) anlage that develops into some salivary gland duct primordium.
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: salivary gland duct anlage
annotated property: hasRelatedSynonym
annotated target: A SalD
database_cross_reference: https://orcid.org/0000-0002-7073-9172

endoderm anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: Restriction
  on property: develops into
  some values from: endoderm
definition: Contiguous region of early embryonic cells that will invaginate during gastrulation to form a region of the endoderm (Campos-Ortega and Hartenstein, 1997).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005435
in subset: cur

Axiom
annotated source: endoderm anlage
annotated property: definition
annotated target: Contiguous region of early embryonic cells that will invaginate during gastrulation to form a region of the endoderm (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0155831

trunk mesoderm anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: Restriction
  on property: part of
  some values from: mesoderm anlage
subclass of: Restriction
  on property: develops into
  some values from: trunk mesoderm
definition: A(n) anlage that develops into some trunk mesoderm.
has OBO namespace: fly_anatomy.ontology
has related synonym: Asn/A TrMes
id: FBbt:00005436
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: trunk mesoderm anlage
annotated property: definition
annotated target: A(n) anlage that develops into some trunk mesoderm.
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: trunk mesoderm anlage
annotated property: hasRelatedSynonym
annotated target: Asn/A TrMes
database_cross_reference: https://orcid.org/0000-0002-7073-9172

circulatory system primordium
type: Class
equivalent class: Class
  intersection of: primordium
  intersection of: Restriction
    on property: develops into
    some values from: Class
      intersection of: anatomical entity
      intersection of: Restriction
        on property: part of
        some values from: circulatory system
subclass of: primordium
subclass of: Restriction
  on property: develops into
  some values from: Class
    intersection of: anatomical entity
    intersection of: Restriction
      on property: part of
      some values from: circulatory system
definition: Any primordium (FBbt:00005495) that develops into is part of some anatomical entity (FBbt:10000000) that is part of some circulatory system (FBbt:00005057).
database_cross_reference: UBERON:6005461
has OBO namespace: fly_anatomy.ontology
has related synonym: embryonic/larval circulatory system specific anlage
id: FBbt:00005461
in subset: cur

Axiom
annotated source: circulatory system primordium
annotated property: definition
annotated target: Any primordium (FBbt:00005495) that develops into is part of some anatomical entity (FBbt:10000000) that is part of some circulatory system (FBbt:00005057).
database_cross_reference: FBC:Autogenerated

gonadal sheath proper primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: somatic trunk mesoderm derivative
subclass of: visceral trunk mesoderm derivative
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: fat body/gonad primordium
subclass of: Restriction
  on property: develops into
  some values from: embryonic/larval gonadal sheath muscle cell
definition: The primordium of the gonadal sheath. This arises from clusters of cells in parasegments 10, 11 and 12 of the dorsal branch of the fat body/gonad primordium which split off during stage 14 and then cluster around the germ cells.
has narrow synonym: SGP
has narrow synonym: somatic gonadal precursor
has OBO namespace: fly_anatomy.ontology
has related synonym: gonadal mesoderm
has related synonym: gonadal sheath specific anlage
id: FBbt:00005473
in subset: cur

Axiom
annotated source: gonadal sheath proper primordium
annotated property: definition
annotated target: The primordium of the gonadal sheath. This arises from clusters of cells in parasegments 10, 11 and 12 of the dorsal branch of the fat body/gonad primordium which split off during stage 14 and then cluster around the germ cells.
database_cross_reference: FlyBase:FBrf0092473

Axiom
annotated source: gonadal sheath proper primordium
annotated property: hasNarrowSynonym
annotated target: SGP
database_cross_reference: FlyBase:FBrf0092473

Axiom
annotated source: gonadal sheath proper primordium
annotated property: hasNarrowSynonym
annotated target: somatic gonadal precursor
database_cross_reference: FlyBase:FBrf0092473

Axiom
annotated source: gonadal sheath proper primordium
annotated property: hasRelatedSynonym
annotated target: gonadal sheath specific anlage
database_cross_reference: FBC:VH

embryonic leading edge cell primordium
type: Class
subclass of: dorsal ectoderm derivative
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: dorsal epidermis primordium
has OBO namespace: fly_anatomy.ontology
has related synonym: A EdCe
has related synonym: embryonic leading edge cell specific anlage
id: FBbt:00005475
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic leading edge cell primordium
annotated property: hasRelatedSynonym
annotated target: A EdCe
database_cross_reference: https://orcid.org/0000-0002-7073-9172

primordium
type: Class
subclass of: developing material anatomical entity
subclass of: Restriction
  on property: develops from
  some values from: anlage
definition: Precursor structure that can be recognized based on its distinct morphology and will give rise to one or more differentiated structures (Tomancak et al., 2002; Hartenstein, 2004). It develops from an anlage and may contain smaller anlage and primordia that will produce substructures (Tomancak et al., 2002).
database_cross_reference: UBERON:0001048
has OBO namespace: fly_anatomy.ontology
has related synonym: P
has related synonym: placode
id: FBbt:00005495
in subset: EmbDevSlim
in subset: FB gloss
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: primordium
annotated property: definition
annotated target: Precursor structure that can be recognized based on its distinct morphology and will give rise to one or more differentiated structures (Tomancak et al., 2002; Hartenstein, 2004). It develops from an anlage and may contain smaller anlage and primordia that will produce substructures (Tomancak et al., 2002).
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0155831
database_cross_reference: FlyBase:FBrf0178740

prothoracic gland primordium
type: Class
subclass of: dorsal ectoderm derivative
subclass of: ring gland primordium
subclass of: Restriction
  on property: develops from
  some values from: dorsal sensory complex primordium
subclass of: Restriction
  on property: develops into
  some values from: prothoracic gland
definition: The primordium that will form the embryonic/larval prothoracic gland, a substructure of the embryonic/larval ring gland. It originates in the dorsal ectoderm of T1, from which it segregates during stage 15 to form bilateral clusters near the heart precursors. In late embryogenesis, it partially fuses with the corpus allatum.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005497
in subset: cur

Axiom
annotated source: prothoracic gland primordium
annotated property: definition
annotated target: The primordium that will form the embryonic/larval prothoracic gland, a substructure of the embryonic/larval ring gland. It originates in the dorsal ectoderm of T1, from which it segregates during stage 15 to form bilateral clusters near the heart precursors. In late embryogenesis, it partially fuses with the corpus allatum.
database_cross_reference: FlyBase:FBrf0089570

Malpighian tubule main body primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: posterior ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: Malpighian tubule primordium
subclass of: Restriction
  on property: develops into
  some values from: embryonic posterior Malpighian tubule
definition: A(n) primordium that develops into some embryonic posterior Malpighian tubule. It develops from some Malpighian tubule primordium.
has OBO namespace: fly_anatomy.ontology
has related synonym: P1 MalTB
id: FBbt:00005501
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: Malpighian tubule main body primordium
annotated property: definition
annotated target: A(n) primordium that develops into some embryonic posterior Malpighian tubule. It develops from some Malpighian tubule primordium.
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: Malpighian tubule main body primordium
annotated property: hasRelatedSynonym
annotated target: P1 MalTB
database_cross_reference: https://orcid.org/0000-0002-7073-9172

Malpighian tubule tip cell primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: posterior ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: Malpighian tubule primordium
subclass of: Restriction
  on property: develops into
  some values from: embryonic Malpighian tubule tip cell
definition: A(n) primordium that develops into some embryonic Malpighian tubule tip cell. It develops from some Malpighian tubule primordium.
has OBO namespace: fly_anatomy.ontology
has related synonym: Malpighian tubule tip cell specific anlage
has related synonym: P1 MalTT
id: FBbt:00005502
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: Malpighian tubule tip cell primordium
annotated property: definition
annotated target: A(n) primordium that develops into some embryonic Malpighian tubule tip cell. It develops from some Malpighian tubule primordium.
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: Malpighian tubule tip cell primordium
annotated property: hasRelatedSynonym
annotated target: P1 MalTT
database_cross_reference: https://orcid.org/0000-0002-7073-9172

small intestine primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: posterior ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: hindgut proper primordium
subclass of: Restriction
  on property: develops into
  some values from: embryonic small intestine
definition: A(n) primordium that develops into some embryonic small intestine. It develops from some hindgut proper primordium.
has OBO namespace: fly_anatomy.ontology
has related synonym: P1 SmInt
has related synonym: small intestine specific anlage
id: FBbt:00005504
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: small intestine primordium
annotated property: definition
annotated target: A(n) primordium that develops into some embryonic small intestine. It develops from some hindgut proper primordium.
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: small intestine primordium
annotated property: hasRelatedSynonym
annotated target: P1 SmInt
database_cross_reference: https://orcid.org/0000-0002-7073-9172

large intestine primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: posterior ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: hindgut proper primordium
subclass of: Restriction
  on property: develops into
  some values from: embryonic large intestine
definition: A(n) primordium that develops into some embryonic large intestine. It develops from some hindgut proper primordium.
has OBO namespace: fly_anatomy.ontology
has related synonym: P1 LaInt
has related synonym: large intestine specific anlage
id: FBbt:00005505
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: large intestine primordium
annotated property: definition
annotated target: A(n) primordium that develops into some embryonic large intestine. It develops from some hindgut proper primordium.
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: large intestine primordium
annotated property: hasRelatedSynonym
annotated target: P1 LaInt
database_cross_reference: https://orcid.org/0000-0002-7073-9172

rectum primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: posterior ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: hindgut proper primordium
subclass of: Restriction
  on property: develops into
  some values from: embryonic/larval rectum
definition: A(n) primordium that develops into some embryonic/larval rectum. It develops from some hindgut proper primordium.
has OBO namespace: fly_anatomy.ontology
has related synonym: P1 Rect
has related synonym: rectum specific anlage
id: FBbt:00005506
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: rectum primordium
annotated property: definition
annotated target: A(n) primordium that develops into some embryonic/larval rectum. It develops from some hindgut proper primordium.
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: rectum primordium
annotated property: hasRelatedSynonym
annotated target: P1 Rect
database_cross_reference: https://orcid.org/0000-0002-7073-9172

embryonic primordium of adult hindgut precursor
type: Class
subclass of: embryonic imaginal tissue
subclass of: primordium
subclass of: posterior ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: hindgut proper primordium
subclass of: Restriction
  on property: develops into
  some values from: embryonic precursor of adult hindgut
definition: Primordium of the late extended germ band embryo that will give rise to the embryonic precursor of the adult hindgut.
has exact synonym: adult hindgut precursor primordium
has exact synonym: adult hindgut primordium
has OBO namespace: fly_anatomy.ontology
has related synonym: P1 AdHi
has related synonym: adult hindgut specific anlage
id: FBbt:00005513
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic primordium of adult hindgut precursor
annotated property: definition
annotated target: Primordium of the late extended germ band embryo that will give rise to the embryonic precursor of the adult hindgut.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

Axiom
annotated source: embryonic primordium of adult hindgut precursor
annotated property: hasRelatedSynonym
annotated target: P1 AdHi
database_cross_reference: https://orcid.org/0000-0002-7073-9172

embryonic primordium of adult muscle precursor
type: Class
subclass of: embryonic imaginal tissue
subclass of: primordium
subclass of: trunk mesoderm derivative
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops into
  some values from: embryonic precursor cell of adult muscle
definition: Primordium of the late extended germ band and dorsal closure embryo that will give rise to the embryonic precursor of the adult muscle.
has alternative id: FBbt:00005471
has exact synonym: adult muscle precursor primordium
has OBO namespace: fly_anatomy.ontology
has related synonym: adult muscle precursor specific anlage
id: FBbt:00005516
in subset: cur

Axiom
annotated source: embryonic primordium of adult muscle precursor
annotated property: definition
annotated target: Primordium of the late extended germ band and dorsal closure embryo that will give rise to the embryonic precursor of the adult muscle.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

somatic muscle primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: somatic trunk mesoderm derivative
subclass of: Restriction
  on property: part of
  some values from: presumptive embryonic/larval muscle system
subclass of: Restriction
  on property: develops into
  some values from: larval somatic muscle
definition: Primordium of the larval segmentally-repeated body wall musculature. It arises from the outer layer of the trunk mesoderm. During germ band shortening (stage 13), it segregates into loose segmental clusters. Within these clusters, muscle formation proceeds by fusion of fusion competent myoblasts to muscle founder cells. Formation of the embryonic/larval somatic musculature is complete by stage 17.
has OBO namespace: fly_anatomy.ontology
has related synonym: P1 SoMus
has related synonym: SoMusP2
has related synonym: somatic muscle specific anlage
id: FBbt:00005518
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: somatic muscle primordium
annotated property: definition
annotated target: Primordium of the larval segmentally-repeated body wall musculature. It arises from the outer layer of the trunk mesoderm. During germ band shortening (stage 13), it segregates into loose segmental clusters. Within these clusters, muscle formation proceeds by fusion of fusion competent myoblasts to muscle founder cells. Formation of the embryonic/larval somatic musculature is complete by stage 17.
database_cross_reference: FlyBase:FBrf0064793
database_cross_reference: FlyBase:FBrf0064803
database_cross_reference: FlyBase:FBrf0089570

Axiom
annotated source: somatic muscle primordium
annotated property: hasRelatedSynonym
annotated target: P1 SoMus
database_cross_reference: https://orcid.org/0000-0002-7073-9172

fat body/gonad primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: somatic trunk mesoderm derivative
subclass of: Class
  intersection of: Restriction
    on property: develops into
    some values from: fat body primordium
  intersection of: Restriction
    on property: develops into
    some values from: gonadal sheath proper primordium
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
definition: Primordium which develops into the fat body and gonadal sheath. The cells that comprise it are specified from stage 10 (Jemc, 2010), though the first morphological sign of its development comes during stage 11, when the outer of the two layers of the trunk mesoderm thickens medially to become 2-3 cells thick. Segmentally arranged groups of cells split off from inner most layer of this thickening, becoming sandwiched between the somatic muscle primordium and the circular visceral muscle primordium. By stage 13, these segmental clusters have fused into continuous columns on either side of the embryo. These bands split into dorsal and ventral subdivisions. A sub-population of cells in the dorsal subdivision in parasegments 10-12 split off to form the gonadal sheath primordium during stage 14-15. The other cells then form the fat body primordium proper.
has exact synonym: bipotential lateral mesoderm
has narrow synonym: gonadal mesoderm
has OBO namespace: fly_anatomy.ontology
has related synonym: FaB/GP2
has related synonym: P2 FaB/GP
id: FBbt:00005520
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: fat body/gonad primordium
annotated property: definition
annotated target: Primordium which develops into the fat body and gonadal sheath. The cells that comprise it are specified from stage 10 (Jemc, 2010), though the first morphological sign of its development comes during stage 11, when the outer of the two layers of the trunk mesoderm thickens medially to become 2-3 cells thick. Segmentally arranged groups of cells split off from inner most layer of this thickening, becoming sandwiched between the somatic muscle primordium and the circular visceral muscle primordium. By stage 13, these segmental clusters have fused into continuous columns on either side of the embryo. These bands split into dorsal and ventral subdivisions. A sub-population of cells in the dorsal subdivision in parasegments 10-12 split off to form the gonadal sheath primordium during stage 14-15. The other cells then form the fat body primordium proper.
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0092473
database_cross_reference: FlyBase:FBrf0216740

Axiom
annotated source: fat body/gonad primordium
annotated property: hasExactSynonym
annotated target: bipotential lateral mesoderm
database_cross_reference: FlyBase:FBrf0102832

Axiom
annotated source: fat body/gonad primordium
annotated property: hasRelatedSynonym
annotated target: P2 FaB/GP
database_cross_reference: https://orcid.org/0000-0002-7073-9172

inclusive hindgut primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: Class
  intersection of: Restriction
    on property: develops into
    some values from: hindgut proper primordium
  intersection of: Restriction
    on property: develops into
    some values from: Malpighian tubule primordium
subclass of: Restriction
  on property: part of
  some values from: posterior ectoderm
subclass of: Restriction
  on property: part of
  some values from: amnioproctodeal invagination
subclass of: Restriction
  on property: develops from
  some values from: hindgut anlage
definition: A(n) primordium that develops into some hindgut proper primordium and some Malpighian tubule primordium. It develops from some hindgut anlage.
has OBO namespace: fly_anatomy.ontology
has related synonym: iHiGP2
id: FBbt:00005523
in subset: cur

Axiom
annotated source: inclusive hindgut primordium
annotated property: definition
annotated target: A(n) primordium that develops into some hindgut proper primordium and some Malpighian tubule primordium. It develops from some hindgut anlage.
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: inclusive hindgut primordium
annotated property: hasRelatedSynonym
annotated target: iHiGP2
database_cross_reference: https://orcid.org/0000-0002-7073-9172

dorsal epidermis primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: dorsal ectoderm derivative
subclass of: Class
  intersection of: Restriction
    on property: develops into
    some values from: embryonic leading edge cell primordium
  intersection of: Restriction
    on property: develops into
    some values from: dorsal sensory complex primordium
  intersection of: Restriction
    on property: develops into
    some values from: dorsal trunk epidermis primordium
  intersection of: Restriction
    on property: develops into
    some values from: dorsal apodeme anlage
  intersection of: Restriction
    on property: develops into
    some values from: oenocyte primordium
  intersection of: Restriction
    on property: develops into
    some values from: abdominal histoblast anlage
subclass of: Restriction
  on property: part of
  some values from: early extended germ band embryo
definition: A(n) primordium that develops into some dorsal apodeme anlage and some oenocyte primordium and some dorsal trunk epidermis primordium and some embryonic leading edge cell primordium and some dorsal sensory complex primordium and some abdominal histoblast anlage. It develops from some dorsal ectoderm.
database_cross_reference: UBERON:6005526
has OBO namespace: fly_anatomy.ontology
has related synonym: dorEpiP2
has related synonym: dorsal epidermis specific anlage
id: FBbt:00005526
in subset: cur

Axiom
annotated source: dorsal epidermis primordium
annotated property: definition
annotated target: A(n) primordium that develops into some dorsal apodeme anlage and some oenocyte primordium and some dorsal trunk epidermis primordium and some embryonic leading edge cell primordium and some dorsal sensory complex primordium and some abdominal histoblast anlage. It develops from some dorsal ectoderm.
database_cross_reference: FBC:Autogenerated

salivary gland duct primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: presumptive embryonic salivary gland
subclass of: Restriction
  on property: part of
  some values from: early extended germ band embryo
subclass of: Restriction
  on property: develops from
  some values from: salivary gland duct anlage
subclass of: Restriction
  on property: develops into
  some values from: embryonic/larval salivary gland duct
definition: A(n) primordium that develops into some embryonic/larval salivary gland duct. It develops from some salivary gland duct anlage.
has OBO namespace: fly_anatomy.ontology
has related synonym: P1 SalD
has related synonym: SalDP2
has related synonym: salivary gland duct specific anlage
id: FBbt:00005531
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: salivary gland duct primordium
annotated property: definition
annotated target: A(n) primordium that develops into some embryonic/larval salivary gland duct. It develops from some salivary gland duct anlage.
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: salivary gland duct primordium
annotated property: hasRelatedSynonym
annotated target: P1 SalD
database_cross_reference: https://orcid.org/0000-0002-7073-9172

ventral epidermis primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: ventral ectoderm derivative
subclass of: Class
  intersection of: Restriction
    on property: develops into
    some values from: imaginal disc primordium
  intersection of: Restriction
    on property: develops into
    some values from: embryonic ventral epidermis
  intersection of: Restriction
    on property: develops into
    some values from: ventral trunk epidermis primordium
  intersection of: Restriction
    on property: develops into
    some values from: anal pad primordium
  intersection of: Restriction
    on property: develops into
    some values from: ventral apodeme anlage
  intersection of: Restriction
    on property: develops into
    some values from: denticle field anlage
subclass of: Restriction
  on property: part of
  some values from: early extended germ band embryo
subclass of: Restriction
  on property: develops from
  some values from: ventral neurectoderm
definition: A(n) primordium that develops into some denticle field anlage and some anal pad primordium and some embryonic ventral epidermis and some imaginal disc primordium and some ventral apodeme anlage and some ventral trunk epidermis primordium. It develops from some ventral neurectoderm.
database_cross_reference: UBERON:6005533
has OBO namespace: fly_anatomy.ontology
has related synonym: P2 iVenEp
has related synonym: venEpiP2
id: FBbt:00005533
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: ventral epidermis primordium
annotated property: definition
annotated target: A(n) primordium that develops into some denticle field anlage and some anal pad primordium and some embryonic ventral epidermis and some imaginal disc primordium and some ventral apodeme anlage and some ventral trunk epidermis primordium. It develops from some ventral neurectoderm.
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: ventral epidermis primordium
annotated property: hasRelatedSynonym
annotated target: P2 iVenEp
database_cross_reference: https://orcid.org/0000-0002-7073-9172

cardiogenic mesoderm
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: Restriction
  on property: part of
  some values from: trunk mesoderm
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
definition: Dorsal-most region of the trunk mesoderm that gives rise to the dorsal vessel (Campos-Ortega and Hartenstein, 1997). It forms a leading edge as the invaginated trunk mesoderm spreads from ventral to dorsal (Campos-Ortega and Hartenstein, 1997). The left and right regions eventually fuse at the dorsal midline and their cells differentiate into cardioblasts and pericardial cells (Campos-Ortega and Hartenstein, 1997).
has alternative id: FBbt:00005561
has exact synonym: CardMes
has exact synonym: CardMesP2
has exact synonym: P2 CardMes
has exact synonym: cardiac mesoderm
has exact synonym: mesodermal crest
has OBO namespace: fly_anatomy.ontology
has related synonym: cardiac mesoderm primordium
id: FBbt:00005541
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: cardiogenic mesoderm
annotated property: definition
annotated target: Dorsal-most region of the trunk mesoderm that gives rise to the dorsal vessel (Campos-Ortega and Hartenstein, 1997). It forms a leading edge as the invaginated trunk mesoderm spreads from ventral to dorsal (Campos-Ortega and Hartenstein, 1997). The left and right regions eventually fuse at the dorsal midline and their cells differentiate into cardioblasts and pericardial cells (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0253577

Axiom
annotated source: cardiogenic mesoderm
annotated property: hasExactSynonym
annotated target: P2 CardMes
database_cross_reference: https://orcid.org/0000-0002-7073-9172

Axiom
annotated source: cardiogenic mesoderm
annotated property: hasExactSynonym
annotated target: mesodermal crest
database_cross_reference: FlyBase:FBrf0089570

sensory nervous system primordium
type: Class
subclass of: primordium
has OBO namespace: fly_anatomy.ontology
has related synonym: sensory nervous system specific anlage
id: FBbt:00005551
in subset: cur

dorsal sensory complex primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: dorsal ectoderm derivative
subclass of: Class
  intersection of: Restriction
    on property: develops into
    some values from: peripheral nervous system precursor cluster
  intersection of: Restriction
    on property: develops into
    some values from: prothoracic gland primordium
  intersection of: Restriction
    on property: develops into
    some values from: dorsal sensory complex proper primordium
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: develops from
  some values from: dorsal epidermis primordium
definition: A(n) primordium that develops into some dorsal sensory complex proper primordium and some peripheral nervous system precursor cluster and some prothoracic gland primordium. It develops from some dorsal epidermis primordium.
has OBO namespace: fly_anatomy.ontology
has related synonym: A/P4 DorSens
id: FBbt:00005553
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: dorsal sensory complex primordium
annotated property: definition
annotated target: A(n) primordium that develops into some dorsal sensory complex proper primordium and some peripheral nervous system precursor cluster and some prothoracic gland primordium. It develops from some dorsal epidermis primordium.
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: dorsal sensory complex primordium
annotated property: hasRelatedSynonym
annotated target: A/P4 DorSens
database_cross_reference: https://orcid.org/0000-0002-7073-9172

ventral nerve cord primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: portion of tissue
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: extended germ band embryo
subclass of: Restriction
  on property: develops from
  some values from: ventral neurectoderm
subclass of: Restriction
  on property: develops into
  some values from: larval ventral nerve cord
definition: Primordium which is formed by the delamination of neuroblasts from the ventral neurogenic region. The first of five waves of delamination starts towards the end of embryonic stage 8. During stage 11, the mesectoderm loses contact with the outer surface and forms neuronal and glial precursors in the midline of this primordium.
has alternative id: FBbt:00000115
has alternative id: FBbt:00005430
has OBO namespace: fly_anatomy.ontology
has related synonym: AvenNeur
has related synonym: P3 venNeur
has related synonym: venNeurP3
has related synonym: ventral neurectoderm
has related synonym: ventral neuroderm primordium
has related synonym: ventral neuroectoderm
id: FBbt:00005554
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: ventral nerve cord primordium
annotated property: definition
annotated target: Primordium which is formed by the delamination of neuroblasts from the ventral neurogenic region. The first of five waves of delamination starts towards the end of embryonic stage 8. During stage 11, the mesectoderm loses contact with the outer surface and forms neuronal and glial precursors in the midline of this primordium.
database_cross_reference: FlyBase:FBrf0089570

Axiom
annotated source: ventral nerve cord primordium
annotated property: hasRelatedSynonym
annotated target: P3 venNeur
database_cross_reference: https://orcid.org/0000-0002-7073-9172

ventral ectoderm
type: Class
subclass of: developing embryonic structure
subclass of: Restriction
  on property: part of
  some values from: trunk ectoderm
subclass of: Restriction
  on property: develops from
  some values from: ventral ectoderm anlage
definition: Ventral region of the trunk ectoderm, which gives rise to the ventral epidermis and the central nervous system (Stathopoulos and Newcomb, 2020).
database_cross_reference: UBERON:6005558
has exact synonym: neuroectoderm
has exact synonym: neurogenic ectoderm
has OBO namespace: fly_anatomy.ontology
has related synonym: P2 VenEc
has related synonym: venEc
id: FBbt:00005558
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: ventral ectoderm
annotated property: definition
annotated target: Ventral region of the trunk ectoderm, which gives rise to the ventral epidermis and the central nervous system (Stathopoulos and Newcomb, 2020).
database_cross_reference: FlyBase:FBrf0244630
database_cross_reference: FlyBase:FBrf0246683

Axiom
annotated source: ventral ectoderm
annotated property: hasExactSynonym
annotated target: neuroectoderm
database_cross_reference: FlyBase:FBrf0244630

Axiom
annotated source: ventral ectoderm
annotated property: hasExactSynonym
annotated target: neurogenic ectoderm
database_cross_reference: FlyBase:FBrf0246683

Axiom
annotated source: ventral ectoderm
annotated property: hasRelatedSynonym
annotated target: P2 VenEc
database_cross_reference: https://orcid.org/0000-0002-7073-9172

posterior endoderm
type: Class
subclass of: developing embryonic structure
subclass of: Restriction
  on property: part of
  some values from: endoderm
subclass of: Restriction
  on property: part of
  some values from: stage 7 embryo
subclass of: Restriction
  on property: part of
  some values from: stage 8 embryo
subclass of: Restriction
  on property: part of
  some values from: early extended germ band embryo
subclass of: Restriction
  on property: develops from
  some values from: posterior endoderm anlage
definition: The posterior part of the endoderm from its invagination as part of the amnioproctodeal invagination during stage 7, until it becomes morphologically distinct from the hindgut primordium due to a epithelial-to-mesenchymal transition at the end of stage 10 (Reuter et al., 1993). This epithelial-to-mesenchymal transition is also the transition from posterior endoderm to posterior midgut primordium.
has alternative id: FBbt:00005522
has alternative id: FBbt:00005525
has exact synonym: PMG
has exact synonym: posterior midgut rudiment
has OBO namespace: fly_anatomy.ontology
has related synonym: P2 postEndo
has related synonym: postEndo
has related synonym: postEndoP2
has related synonym: postMGRudP2
has related synonym: posterior endoderm primordium P2
has related synonym: posterior midgut primordium rudiment
id: FBbt:00005560
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: posterior endoderm
annotated property: definition
annotated target: The posterior part of the endoderm from its invagination as part of the amnioproctodeal invagination during stage 7, until it becomes morphologically distinct from the hindgut primordium due to a epithelial-to-mesenchymal transition at the end of stage 10 (Reuter et al., 1993). This epithelial-to-mesenchymal transition is also the transition from posterior endoderm to posterior midgut primordium.
database_cross_reference: FlyBase:FBrf0068651
database_cross_reference: FlyBase:FBrf0089570

Axiom
annotated source: posterior endoderm
annotated property: hasExactSynonym
annotated target: PMG
database_cross_reference: FlyBase:FBrf0064803

Axiom
annotated source: posterior endoderm
annotated property: hasRelatedSynonym
annotated target: P2 postEndo
database_cross_reference: https://orcid.org/0000-0002-7073-9172

presumptive embryonic/larval tracheal system
type: Class
subclass of: presumptive embryonic/larval system
definition: The sum of all the structures in the embryo that will develop into the embryonic/larval tracheal system. This corresponds to the tracheal primordia and their component tracheal branch primordia along with primordia of the spiracles.
database_cross_reference: UBERON:6005569
has OBO namespace: fly_anatomy.ontology
has related synonym: embryonic tracheal system
id: FBbt:00005569
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: presumptive embryonic/larval tracheal system
annotated property: definition
annotated target: The sum of all the structures in the embryo that will develop into the embryonic/larval tracheal system. This corresponds to the tracheal primordia and their component tracheal branch primordia along with primordia of the spiracles.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

Axiom
annotated source: presumptive embryonic/larval tracheal system
annotated property: hasRelatedSynonym
annotated target: embryonic tracheal system
database_cross_reference: https://orcid.org/0000-0002-7073-9172

embryonic foregut
type: Class
subclass of: foregut
subclass of: anterior ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: presumptive embryonic/larval digestive system
subclass of: Restriction
  on property: develops from
  some values from: foregut anlage
definition: Foregut of the embryo.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005606
in subset: cur

Axiom
annotated source: embryonic foregut
annotated property: definition
annotated target: Foregut of the embryo.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

presumptive embryonic salivary gland
type: Class
subclass of: disconnected anatomical group
subclass of: Restriction
  on property: part of
  some values from: embryonic foregut
definition: The sum of the primordia in the embryo that will contribute to the embryonic/larval salivary gland.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005620
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: presumptive embryonic salivary gland
annotated property: definition
annotated target: The sum of the primordia in the embryo that will contribute to the embryonic/larval salivary gland.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

embryonic hindgut
type: Class
subclass of: hindgut
subclass of: Restriction
  on property: part of
  some values from: presumptive embryonic/larval digestive system
definition: Posterior region of the embryonic gut, posterior to the embryonic midgut. It is divided into 3 domains: small and large intestine and rectum. Border cells separate these three regions.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005630
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic hindgut
annotated property: definition
annotated target: Posterior region of the embryonic gut, posterior to the embryonic midgut. It is divided into 3 domains: small and large intestine and rectum. Border cells separate these three regions.
database_cross_reference: FlyBase:FBrf0134749

embryonic small intestine
type: Class
subclass of: posterior ectoderm derivative
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: embryonic hindgut
subclass of: Restriction
  on property: develops from
  some values from: small intestine primordium
definition: Anterior and small domain of the embryonic hindgut, posterior to the midgut.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005631
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic small intestine
annotated property: definition
annotated target: Anterior and small domain of the embryonic hindgut, posterior to the midgut.
database_cross_reference: FlyBase:FBrf0134749

embryonic large intestine
type: Class
subclass of: posterior ectoderm derivative
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: embryonic hindgut
subclass of: Restriction
  on property: develops from
  some values from: large intestine primordium
definition: Middle and long domain of the embryonic hindgut, posterior to the small intestine.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005632
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic large intestine
annotated property: definition
annotated target: Middle and long domain of the embryonic hindgut, posterior to the small intestine.
database_cross_reference: FlyBase:FBrf0134749

embryonic Malpighian tubule
type: Class
subclass of: Malpighian tubule
subclass of: Restriction
  on property: continuous with
  some values from: embryonic hindgut
definition: Malpighian tubule of the embryo. By mid-embryogenesis when cell division ceases, a phase of tubule elongation starts, and the number of cells surrounding the lumen decreases from 6 to 10 to only 2.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005634
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic Malpighian tubule
annotated property: definition
annotated target: Malpighian tubule of the embryo. By mid-embryogenesis when cell division ceases, a phase of tubule elongation starts, and the number of cells surrounding the lumen decreases from 6 to 10 to only 2.
database_cross_reference: FlyBase:FBrf0064792

embryonic posterior Malpighian tubule
type: Class
subclass of: embryonic Malpighian tubule
subclass of: posterior Malpighian tubule
subclass of: posterior ectoderm derivative
subclass of: Restriction
  on property: develops from
  some values from: Malpighian tubule main body primordium
definition: Posterior Malpighian tubule of the embryo.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005635
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic posterior Malpighian tubule
annotated property: definition
annotated target: Posterior Malpighian tubule of the embryo.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

embryonic specialized Malpighian tubule cell
type: Class
subclass of: specialized Malpighian tubule cell
subclass of: Restriction
  on property: part of
  some values from: embryonic Malpighian tubule
definition: Specialized cell of the embryonic Malpighian tubules.
has exact synonym: embryonic specialised Malpighian tubule cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005642
in subset: cur

Axiom
annotated source: embryonic specialized Malpighian tubule cell
annotated property: definition
annotated target: Specialized cell of the embryonic Malpighian tubules.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

embryonic Malpighian tubule tip cell
type: Class
subclass of: embryonic specialized Malpighian tubule cell
subclass of: Malpighian tubule tip cell
subclass of: posterior ectoderm derivative
subclass of: Restriction
  on property: develops from
  some values from: Malpighian tubule tip cell primordium
definition: Tip cell of the embryonic Malpighian tubule. It persists throughout tubule elongation during stages 13-16 and contacts a specific target by the end of the process (Weavers and Skaer, 2013). It adopts a specialized morphology with the cell body projecting from the tubule tip on the end of a microtubule-enriched stalk (Weavers and Skaer, 2013). It can extend filopodia and lamellipodia to explore its environment and remains free of basement membrane (Weavers and Skaer, 2013).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005643
in subset: cur

Axiom
annotated source: embryonic Malpighian tubule tip cell
annotated property: definition
annotated target: Tip cell of the embryonic Malpighian tubule. It persists throughout tubule elongation during stages 13-16 and contacts a specific target by the end of the process (Weavers and Skaer, 2013). It adopts a specialized morphology with the cell body projecting from the tubule tip on the end of a microtubule-enriched stalk (Weavers and Skaer, 2013). It can extend filopodia and lamellipodia to explore its environment and remains free of basement membrane (Weavers and Skaer, 2013).
database_cross_reference: FlyBase:FBrf0223292

embryonic precursor of adult hindgut
type: Class
subclass of: developing embryonic structure
subclass of: somatic precursor cell
subclass of: posterior ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: embryonic hindgut
subclass of: Restriction
  on property: overlaps
  some values from: larval hindgut imaginal ring
subclass of: Restriction
  on property: overlaps
  some values from: anal imaginal ring
subclass of: Restriction
  on property: develops from
  some values from: embryonic primordium of adult hindgut precursor
definition: Imaginal cell, set aside during embryonic development, that will give rise to the adult hindgut. These cells are found in two rings of the hindgut; immediately posterior to the ureters of the Malpighian tubules, and at the anus. These two rings grow out and eventually unite.
has exact synonym: adult hindgut precursor
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005646
in subset: cur

Axiom
annotated source: embryonic precursor of adult hindgut
annotated property: definition
annotated target: Imaginal cell, set aside during embryonic development, that will give rise to the adult hindgut. These cells are found in two rings of the hindgut; immediately posterior to the ureters of the Malpighian tubules, and at the anus. These two rings grow out and eventually unite.
database_cross_reference: FlyBase:FBrf0064792

presumptive embryonic/larval muscle system
type: Class
subclass of: presumptive embryonic/larval system
definition: The sum of all the structures in the embryo that will develop into the embryonic/larval muscle system.
has OBO namespace: fly_anatomy.ontology
has related synonym: embryonic muscle system
id: FBbt:00005647
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: presumptive embryonic/larval muscle system
annotated property: definition
annotated target: The sum of all the structures in the embryo that will develop into the embryonic/larval muscle system.
database_cross_reference: FlyBase:FBrf0031016
database_cross_reference: FlyBase:FBrf0041814
database_cross_reference: FlyBase:FBrf0044229
database_cross_reference: FlyBase:FBrf0064793

Axiom
annotated source: presumptive embryonic/larval muscle system
annotated property: hasRelatedSynonym
annotated target: embryonic muscle system
database_cross_reference: https://orcid.org/0000-0002-7073-9172

embryonic somatic muscle cell
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: part of
    some values from: embryonic somatic muscle
subclass of: somatic muscle cell
subclass of: Restriction
  on property: part of
  some values from: embryonic somatic muscle
subclass of: Restriction
  on property: develops from
  some values from: myoblast
definition: Any muscle cell (FBbt:00005074) that is part of some embryonic somatic muscle (FBbt:00059033).
has exact synonym: embryonic skeletal muscle cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005649
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic somatic muscle cell
annotated property: definition
annotated target: Any muscle cell (FBbt:00005074) that is part of some embryonic somatic muscle (FBbt:00059033).
database_cross_reference: FBC:Autogenerated

larval excretory system
type: Class
equivalent class: Class
  intersection of: excretory system
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: excretory system
subclass of: Restriction
  on property: part of
  some values from: larva
definition: Excretory system of the late embryo or larva.
has exact synonym: embryonic/larval excretory system
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005718
in subset: cur

Axiom
annotated source: larval excretory system
annotated property: definition
annotated target: Excretory system of the late embryo or larva.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

adult excretory system
type: Class
equivalent class: Class
  intersection of: excretory system
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: excretory system
subclass of: Restriction
  on property: part of
  some values from: adult
definition: Any excretory system of the adult.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005724
in subset: cur

Axiom
annotated source: adult excretory system
annotated property: definition
annotated target: Any excretory system of the adult.
database_cross_reference: FBC:Autogenerated

adult Malpighian tubule
type: Class
subclass of: Malpighian tubule
subclass of: Restriction
  on property: part of
  some values from: adult excretory system
subclass of: Restriction
  on property: continuous with
  some values from: adult hindgut
definition: Malpighian tubule of the adult. It is very similar to that of the larva, except that the initial segment of the anterior tubule is much smaller in the adult.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005725
in subset: cur

Axiom
annotated source: adult Malpighian tubule
annotated property: definition
annotated target: Malpighian tubule of the adult. It is very similar to that of the larva, except that the initial segment of the anterior tubule is much smaller in the adult.
database_cross_reference: FlyBase:FBrf0222532

adult specialized Malpighian tubule cell
type: Class
equivalent class: Class
  intersection of: specialized Malpighian tubule cell
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: specialized Malpighian tubule cell
subclass of: Restriction
  on property: part of
  some values from: adult Malpighian tubule
definition: Specialized cell of the adult Malpighian tubules.
has exact synonym: adult specialised Malpighian tubule cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005733
in subset: cur

Axiom
annotated source: adult specialized Malpighian tubule cell
annotated property: definition
annotated target: Specialized cell of the adult Malpighian tubules.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

adult Malpighian tubule tip cell
type: Class
equivalent class: Class
  intersection of: Malpighian tubule tip cell
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: adult specialized Malpighian tubule cell
subclass of: Malpighian tubule tip cell
definition: Tip cell of the adult Malpighian tubule. The tip cell of the adult anterior tubules makes contact with alary muscles of the heart, whereas the tip cell of the posterior tubules contacts the a9 hindgut visceral nerve on the surface of the hindgut.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005734
in subset: cur

Axiom
annotated source: adult Malpighian tubule tip cell
annotated property: definition
annotated target: Tip cell of the adult Malpighian tubule. The tip cell of the adult anterior tubules makes contact with alary muscles of the heart, whereas the tip cell of the posterior tubules contacts the a9 hindgut visceral nerve on the surface of the hindgut.
database_cross_reference: FlyBase:FBrf0222532
database_cross_reference: FlyBase:FBrf0223292

embryonic dorsal epidermis
type: Class
subclass of: epidermis
subclass of: dorsal ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: embryonic epidermis
subclass of: Restriction
  on property: develops from
  some values from: dorsal trunk epidermis primordium
definition: Epidermis of the dorsal region of the embryo.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005744
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic dorsal epidermis
annotated property: definition
annotated target: Epidermis of the dorsal region of the embryo.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

embryonic dorsal apodeme
type: Class
subclass of: apodeme
subclass of: dorsal ectoderm derivative
subclass of: Restriction
  on property: develops from
  some values from: dorsal apodeme primordium
definition: Dorsal halve of an embryonic apodeme. The discontinuity between dorsal and ventral halves is visible on a lateral view.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005745
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic dorsal apodeme
annotated property: definition
annotated target: Dorsal halve of an embryonic apodeme. The discontinuity between dorsal and ventral halves is visible on a lateral view.
database_cross_reference: FlyBase:FBrf0089570

embryonic ventral epidermis
type: Class
subclass of: ventral ectoderm derivative
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: embryonic epidermis
subclass of: Restriction
  on property: develops from
  some values from: ventral epidermis primordium
definition: Epidermis of the ventral region of the embryo.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005747
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic ventral epidermis
annotated property: definition
annotated target: Epidermis of the ventral region of the embryo.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

embryonic anal pad
type: Class
subclass of: anal pad
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: embryonic ventral epidermis
subclass of: Restriction
  on property: develops from
  some values from: anal pad primordium
definition: Anal pad of the embryo.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005748
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic anal pad
annotated property: definition
annotated target: Anal pad of the embryo.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

embryonic ventral apodeme
type: Class
subclass of: apodeme
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: embryonic ventral epidermis
subclass of: Restriction
  on property: develops from
  some values from: ventral apodeme primordium
definition: Ventral halve of an embryonic apodeme. The discontinuity between dorsal and ventral halves is visible on a lateral view.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005749
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic ventral apodeme
annotated property: definition
annotated target: Ventral halve of an embryonic apodeme. The discontinuity between dorsal and ventral halves is visible on a lateral view.
database_cross_reference: FlyBase:FBrf0089570

rectum
type: Class
subclass of: gut section
subclass of: Restriction
  on property: part of
  some values from: hindgut
definition: Posterior-most portion of the alimentary canal, terminating in the anus.
database_cross_reference: UBERON:0006866
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005756
in subset: cur

Axiom
annotated source: rectum
annotated property: definition
annotated target: Posterior-most portion of the alimentary canal, terminating in the anus.
database_cross_reference: FlyBase:FBrf0064792
database_cross_reference: FlyBase:FBrf0186027

neurohemal organ
type: Class
subclass of: cell cluster organ
subclass of: endocrine system component
subclass of: gland
definition: Gland of the endocrine system from which neurosecretory substances are released into the hemolymph.
database_cross_reference: UBERON:0001053
has exact synonym: neurohaemal organ
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005757
in subset: cur

Axiom
annotated source: neurohemal organ
annotated property: definition
annotated target: Gland of the endocrine system from which neurosecretory substances are released into the hemolymph.
database_cross_reference: FlyBase:FBrf0239231

anal pad
type: Class
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: hindgut
definition: Plate or plates that surrounds the anus.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005785
in subset: cur

Axiom
annotated source: anal pad
annotated property: definition
annotated target: Plate or plates that surrounds the anus.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

Malpighian tubule
type: Class
subclass of: epithelial tube
subclass of: Restriction
  on property: part of
  some values from: excretory system
subclass of: Restriction
  on property: continuous with
  some values from: hindgut
definition: Epithelial tube with excretory and osmoregulatory roles connected, via a ureter, to the alimentary canal at the junction of the hindgut and midgut. At mid-embryogenesis, there are 6 to 10 cells encircling the lumen, whereas later on, after a phase of tubule elongation, only 2 cells encircle the lumen. There are two pairs of Malpighian tubules: one pair arises from the dorsal part of the hindgut and lies at the anterior end of the abdomen; the other pair arises from the ventral part of the hindgut and lies at the posterior end of the abdomen. Each pair shares a common ureter. The anterior pair is longer than the posterior pair.
database_cross_reference: UBERON:0001054
has exact synonym: renal tubule
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005786
in subset: FB gloss
in subset: cur

Axiom
annotated source: Malpighian tubule
annotated property: definition
annotated target: Epithelial tube with excretory and osmoregulatory roles connected, via a ureter, to the alimentary canal at the junction of the hindgut and midgut. At mid-embryogenesis, there are 6 to 10 cells encircling the lumen, whereas later on, after a phase of tubule elongation, only 2 cells encircle the lumen. There are two pairs of Malpighian tubules: one pair arises from the dorsal part of the hindgut and lies at the anterior end of the abdomen; the other pair arises from the ventral part of the hindgut and lies at the posterior end of the abdomen. Each pair shares a common ureter. The anterior pair is longer than the posterior pair.
database_cross_reference: FlyBase:FBrf0030988
database_cross_reference: FlyBase:FBrf0160493
database_cross_reference: FlyBase:FBrf0166419

Axiom
annotated source: Malpighian tubule
annotated property: hasExactSynonym
annotated target: renal tubule
database_cross_reference: FlyBase:FBrf0209268

posterior Malpighian tubule
type: Class
subclass of: Malpighian tubule
definition: Posterior Malpighian tubule that extends from the midgut hindgut border. It is formed from the ventral part of the hindgut. There is a pair of these that are connected to a common ureter that is on the midgut/hindgut border. The posterior tubules extend towards the tail of the embryo, with each tubule positioned on opposite sides within the body cavity. At the end of embryogenesis, the distal ends switch sides by crossing over the posterior region of the hindgut. In the mature tubules, the tip cell of the posterior tubules makes contact with the a9 abdominal visceral nerve. The posterior tubule pair is shorter than the posterior one.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005787
in subset: cur

Axiom
annotated source: posterior Malpighian tubule
annotated property: definition
annotated target: Posterior Malpighian tubule that extends from the midgut hindgut border. It is formed from the ventral part of the hindgut. There is a pair of these that are connected to a common ureter that is on the midgut/hindgut border. The posterior tubules extend towards the tail of the embryo, with each tubule positioned on opposite sides within the body cavity. At the end of embryogenesis, the distal ends switch sides by crossing over the posterior region of the hindgut. In the mature tubules, the tip cell of the posterior tubules makes contact with the a9 abdominal visceral nerve. The posterior tubule pair is shorter than the posterior one.
database_cross_reference: FlyBase:FBrf0075100
database_cross_reference: FlyBase:FBrf0222532

specialized Malpighian tubule cell
type: Class
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: Malpighian tubule
definition: Specialized cell of the Malpighian tubules. There are four different types: type I, type II, tip and tiny cell.
has exact synonym: specialised Malpighian tubule cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005794
in subset: cur
in subset: scrnaseq slim
comment: Other cell types are known to exist, but have yet not been identified (personal communication by Helen Skaer).

Axiom
annotated source: specialized Malpighian tubule cell
annotated property: definition
annotated target: Specialized cell of the Malpighian tubules. There are four different types: type I, type II, tip and tiny cell.
database_cross_reference: FlyBase:FBrf0184042

Malpighian tubule tip cell
type: Class
subclass of: specialized Malpighian tubule cell
definition: Cell at the distal tip of each Malpighian tubule. It is involved in tube elongation in embryogenesis by stimulating cell proliferation in neighboring cells and in positioning the tubules.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005795
in subset: cur

Axiom
annotated source: Malpighian tubule tip cell
annotated property: definition
annotated target: Cell at the distal tip of each Malpighian tubule. It is involved in tube elongation in embryogenesis by stimulating cell proliferation in neighboring cells and in positioning the tubules.
database_cross_reference: FlyBase:FBrf0050653
database_cross_reference: FlyBase:FBrf0075100
database_cross_reference: FlyBase:FBrf0222532

corpus cardiacum
type: Class
subclass of: neurohemal organ
subclass of: Restriction
  on property: part of
  some values from: retrocerebral complex
subclass of: Restriction
  on property: continuous with
  some values from: nervus corporis cardiaci
definition: Neuroendocrine structure that forms part of the ring gland. In the embryo and larva it is found around the floor of the aorta, just anterior to the brain (Dai and Gilbert, 1991; de Velasco et al., 2004, Nassel and Zandawala, 2020). It migrates posteriorly during metamorphosis (Dai and Gilbert, 1991) and is found posterior to the brain, near the proventriculus, in the adult (Nassel and Zandawala, 2020). It produces Adipokinetic hormone from late embryo to adult stages (Lee and Park, 2004).
database_cross_reference: UBERON:0001056
has exact synonym: CC
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005799
in subset: cur

Axiom
annotated source: corpus cardiacum
annotated property: definition
annotated target: Neuroendocrine structure that forms part of the ring gland. In the embryo and larva it is found around the floor of the aorta, just anterior to the brain (Dai and Gilbert, 1991; de Velasco et al., 2004, Nassel and Zandawala, 2020). It migrates posteriorly during metamorphosis (Dai and Gilbert, 1991) and is found posterior to the brain, near the proventriculus, in the adult (Nassel and Zandawala, 2020). It produces Adipokinetic hormone from late embryo to adult stages (Lee and Park, 2004).
database_cross_reference: FlyBase:FBrf0053727
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0178933
database_cross_reference: FlyBase:FBrf0247015

Axiom
annotated source: corpus cardiacum
annotated property: hasExactSynonym
annotated target: CC
database_cross_reference: FlyBase:FBrf0247015

corpus allatum
type: Class
subclass of: neurohemal organ
subclass of: Restriction
  on property: part of
  some values from: retrocerebral complex
definition: Neuroendocrine structure that forms part of the ring gland. In the embryo and larva it is found dorsal the aorta, anterior to the brain (Dai and Gilbert, 1991; de Velasco et al., 2004, Nassel and Zandawala, 2020). It migrates posteriorly during metamorphosis (Dai and Gilbert, 1991) and in the adult it is found posterior to the brain, dorsal to the corpus cardiacum (Nassel and Zandawala, 2020). It produces juvenile hormone (Dai and Gilbert, 1991; Hartenstein, 1993; Nassel and Zandawala, 2020).
database_cross_reference: UBERON:0001057
has exact synonym: CA
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005800
in subset: cur

Axiom
annotated source: corpus allatum
annotated property: definition
annotated target: Neuroendocrine structure that forms part of the ring gland. In the embryo and larva it is found dorsal the aorta, anterior to the brain (Dai and Gilbert, 1991; de Velasco et al., 2004, Nassel and Zandawala, 2020). It migrates posteriorly during metamorphosis (Dai and Gilbert, 1991) and in the adult it is found posterior to the brain, dorsal to the corpus cardiacum (Nassel and Zandawala, 2020). It produces juvenile hormone (Dai and Gilbert, 1991; Hartenstein, 1993; Nassel and Zandawala, 2020).
database_cross_reference: FlyBase:FBrf0053727
database_cross_reference: FlyBase:FBrf0064803
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0179777
database_cross_reference: FlyBase:FBrf0247015

Axiom
annotated source: corpus allatum
annotated property: hasExactSynonym
annotated target: CA
database_cross_reference: FlyBase:FBrf0247015

dorsal imaginal tissue
type: Class
subclass of: imaginal tissue
definition: Imaginal tissue that has a dorsal location.
database_cross_reference: UBERON:6005831
has OBO namespace: fly_anatomy.ontology
has related synonym: dorsal imaginal precursor
id: FBbt:00005831
in subset: cur

adult peripheral nervous system
type: Class
equivalent class: Class
  intersection of: peripheral nervous system
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: peripheral nervous system
subclass of: Restriction
  on property: part of
  some values from: adult nervous system
definition: Peripheral nervous system of the adult.
database_cross_reference: VFB:FBbt_00005892
has exact synonym: adult PNS
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005892
in subset: cur

Axiom
annotated source: adult peripheral nervous system
annotated property: definition
annotated target: Peripheral nervous system of the adult.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

larval peripheral nervous system
type: Class
equivalent class: Class
  intersection of: peripheral nervous system
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: peripheral nervous system
subclass of: Restriction
  on property: part of
  some values from: larval nervous system
definition: Peripheral nervous system of the embryo or larva.
database_cross_reference: VFB:FBbt_00005893
has exact synonym: embryonic/larval PNS
has exact synonym: embryonic/larval peripheral nervous system
has exact synonym: larval PNS
has OBO namespace: fly_anatomy.ontology
id: FBbt:00005893
in subset: cur
in subset: larval OF

Axiom
annotated source: larval peripheral nervous system
annotated property: definition
annotated target: Peripheral nervous system of the embryo or larva.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

somatic trunk mesoderm derivative
type: Class
equivalent class: Class
  intersection of: anatomical entity
  intersection of: Restriction
    on property: develops from
    some values from: somatic trunk mesoderm
subclass of: trunk mesoderm derivative
subclass of: Restriction
  on property: develops from
  some values from: somatic trunk mesoderm
definition: Any anatomical entity (FBbt:10000000) that develops from some somatic trunk mesoderm (FBbt:00000129).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00006001
in subset: cur

Axiom
annotated source: somatic trunk mesoderm derivative
annotated property: definition
annotated target: Any anatomical entity (FBbt:10000000) that develops from some somatic trunk mesoderm (FBbt:00000129).
database_cross_reference: https://orcid.org/0000-0002-7073-9172

gonadal somatic stem cell
type: Class
equivalent class: Class
  intersection of: somatic stem cell
  intersection of: Restriction
    on property: part of
    some values from: gonad
subclass of: somatic stem cell
subclass of: Restriction
  on property: part of
  some values from: gonad
definition: Any somatic stem cell (FBbt:00007344) that is part of some gonad (FBbt:00004858).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00006010
in subset: cur

Axiom
annotated source: gonadal somatic stem cell
annotated property: definition
annotated target: Any somatic stem cell (FBbt:00007344) that is part of some gonad (FBbt:00004858).
database_cross_reference: FBC:Autogenerated

pharate adult
type: Class
subclass of: organism
subclass of: Restriction
  on property: develops from
  some values from: pupa
definition: The developing adult after pupal-adult apolysis, i.e. from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion.
database_cross_reference: UBERON:6006011
has OBO namespace: fly_anatomy.ontology
id: FBbt:00006011
in subset: FB gloss
in subset: cur

Axiom
annotated source: pharate adult
annotated property: definition
annotated target: The developing adult after pupal-adult apolysis, i.e. from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion.
database_cross_reference: FlyBase:FBrf0049147

anatomical structure
type: Class
subclass of: material anatomical entity
definition: Material anatomical entity that has inherent 3D shape, whose parts are all connected and that is generated by coordinated expression of the organism's own genome.
database_cross_reference: CARO:0000003
database_cross_reference: UBERON:0000061
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007001
in subset: cur
in subset: larval OF

Axiom
annotated source: anatomical structure
annotated property: definition
annotated target: Material anatomical entity that has inherent 3D shape, whose parts are all connected and that is generated by coordinated expression of the organism's own genome.
database_cross_reference: https://orcid.org/0000-0001-9114-8737
database_cross_reference: https://orcid.org/0000-0002-7073-9172

cell
type: Class
subclass of: anatomical structure
definition: Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
database_cross_reference: CARO:0000013
database_cross_reference: CL:0000000
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007002
in subset: FB gloss
in subset: cur
in subset: larval OF

Axiom
annotated source: cell
annotated property: definition
annotated target: Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
database_cross_reference: https://orcid.org/0000-0001-9114-8737

portion of tissue
type: Class
subclass of: multicellular structure
definition: Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships.
database_cross_reference: CARO:0000043
database_cross_reference: UBERON:0000479
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007003
in subset: cur

Axiom
annotated source: portion of tissue
annotated property: definition
annotated target: Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships.
database_cross_reference: https://orcid.org/0000-0001-9114-8737

male organism
type: Class
subclass of: organism
definition: Gonochoristic organism that can produce male gametes.
database_cross_reference: CARO:0000027
database_cross_reference: UBERON:0003101
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007004
in subset: cur

Axiom
annotated source: male organism
annotated property: definition
annotated target: Gonochoristic organism that can produce male gametes.
database_cross_reference: https://orcid.org/0000-0001-9114-8737

epithelium
type: Class
subclass of: portion of tissue
definition: Portion of tissue, that consists of one or more layers of cells with distinct apical-basal polarity, connected to each other by cell junctions.
database_cross_reference: UBERON:0000483
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007005
in subset: cur

Axiom
annotated source: epithelium
annotated property: definition
annotated target: Portion of tissue, that consists of one or more layers of cells with distinct apical-basal polarity, connected to each other by cell junctions.
database_cross_reference: https://orcid.org/0000-0001-9114-8737

developing material anatomical entity
type: Class
subclass of: material anatomical entity
database_cross_reference: CARO:0000066
database_cross_reference: UBERON:0005423
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007006
in subset: cur

somatic precursor cell
type: Class
subclass of: developing material anatomical entity
subclass of: somatic cell
definition: Somatic cell that is a precursor to a mature cell.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007008
in subset: cur
in subset: scrnaseq slim

Axiom
annotated source: somatic precursor cell
annotated property: definition
annotated target: Somatic cell that is a precursor to a mature cell.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

organism subdivision
type: Class
subclass of: multicellular structure
definition: Anatomical structure that is a primary subdivision of whole organism. The mereological sum of these is the whole organism.
database_cross_reference: CARO:0000032
database_cross_reference: UBERON:0000475
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007009
in subset: cur
in subset: larval OF

Axiom
annotated source: organism subdivision
annotated property: definition
annotated target: Anatomical structure that is a primary subdivision of whole organism. The mereological sum of these is the whole organism.
database_cross_reference: https://orcid.org/0000-0001-9114-8737

multi-tissue structure
type: Class
subclass of: multicellular structure
definition: Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which, through specific morphogenetic processes, forms a single distinct structural unit demarcated by bona fide boundaries from other distinct structural units of different types.
database_cross_reference: CARO:0000055
database_cross_reference: UBERON:0000481
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007010
in subset: cur
in subset: larval OF

Axiom
annotated source: multi-tissue structure
annotated property: definition
annotated target: Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which, through specific morphogenetic processes, forms a single distinct structural unit demarcated by bona fide boundaries from other distinct structural units of different types.
database_cross_reference: https://orcid.org/0000-0001-9114-8737

acellular anatomical structure
type: Class
subclass of: anatomical structure
database_cross_reference: CARO:0000040
database_cross_reference: UBERON:0000476
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007013
in subset: cur

stem cell
type: Class
subclass of: cell
definition: Undifferentiated cell which retains its identity while budding off cells which differentiate.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007014
in subset: cur
in subset: expressionslim flybase ribbon

Axiom
annotated source: stem cell
annotated property: definition
annotated target: Undifferentiated cell which retains its identity while budding off cells which differentiate.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

material anatomical entity
type: Class
subclass of: anatomical entity
database_cross_reference: CARO:0000006
database_cross_reference: UBERON:0000465
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007016
in subset: cur
in subset: larval OF

cuboidal/columnar epithelium
type: Class
subclass of: epithelium
definition: An epithelium consisting of columnar shaped cells.
database_cross_reference: UBERON:0000485
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007027
in subset: cur

Axiom
annotated source: cuboidal/columnar epithelium
annotated property: definition
annotated target: An epithelium consisting of columnar shaped cells.
database_cross_reference: FlyBase:FBrf0239342

trunk ectoderm
type: Class
subclass of: developing embryonic structure
subclass of: Restriction
  on property: part of
  some values from: ectoderm
definition: The region of the ectoderm posterior to the cephalic furrow.
database_cross_reference: UBERON:6007045
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007045

Axiom
annotated source: trunk ectoderm
annotated property: definition
annotated target: The region of the ectoderm posterior to the cephalic furrow.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

dorsal ectoderm derivative
type: Class
equivalent class: Class
  intersection of: anatomical entity
  intersection of: Restriction
    on property: develops from
    some values from: dorsal ectoderm
subclass of: ectodermal derivative
subclass of: Restriction
  on property: develops from
  some values from: dorsal ectoderm
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007046

multi-cell-component structure
type: Class
subclass of: anatomical structure
definition: A structure mainly consisting of cell components, rather than complete cells.
database_cross_reference: UBERON:0005162
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007060
in subset: larval OF
comment: May contain some complete cells in addition to partial ones (e.g. glia in nervous system regions).

Axiom
annotated source: multi-cell-component structure
annotated property: definition
annotated target: A structure mainly consisting of cell components, rather than complete cells.
database_cross_reference: https://orcid.org/0000-0002-1373-1705
database_cross_reference: https://orcid.org/0000-0002-7073-9172

perineurial glial sheath
type: Class
subclass of: portion of tissue
subclass of: Restriction
  on property: part of
  some values from: perineurium
subclass of: Restriction
  on property: attached to
  some values from: subperineurial glial sheath
definition: The outermost cellular layer of the nervous system, probably of mesodermal origin (Hartenstein and Jan, 1992). This layer consists of glial cells, which participate in nutrient uptake and establish a first diffusion barrier (Limmer et al., 2014).
database_cross_reference: VFB:FBbt_00007089
has exact synonym: apical glial cell
has exact synonym: perineural sheath
has exact synonym: perineurial sheath
has OBO namespace: fly_anatomy.ontology
has related synonym: neural lamella
id: FBbt:00007089
comment: Evidence of mesodermal origin comes from the observation that embryos lacking mesoderm lack this cell layer and the overlying neural lamella (Edwards et al., 1993).

Axiom
annotated source: perineurial glial sheath
annotated property: definition
annotated target: The outermost cellular layer of the nervous system, probably of mesodermal origin (Hartenstein and Jan, 1992). This layer consists of glial cells, which participate in nutrient uptake and establish a first diffusion barrier (Limmer et al., 2014).
database_cross_reference: FlyBase:FBrf0057603
database_cross_reference: FlyBase:FBrf0058936
database_cross_reference: FlyBase:FBrf0226917

Axiom
annotated source: perineurial glial sheath
annotated property: hasExactSynonym
annotated target: apical glial cell
database_cross_reference: FlyBase:FBrf0206543

Axiom
annotated source: perineurial glial sheath
annotated property: hasRelatedSynonym
annotated target: neural lamella
database_cross_reference: FlyBase:FBrf0214261

perineurium
type: Class
subclass of: multi-tissue structure
subclass of: Restriction
  on property: part of
  some values from: nervous system
definition: The outer two layers of glial cells that cover the central nervous system and the nerves. The outer layer is the perineurial glial sheath (sometimes referred to as the perineurial sheath outer layer); the inner layer is the subperineurial glial sheath (sometimes referred to as the perineurial sheath inner layer).
database_cross_reference: VFB:FBbt_00007090
has OBO namespace: fly_anatomy.ontology
has related synonym: blood-brain barrier
id: FBbt:00007090
comment: Some authors use this term only to refer to the double layer of cells covering the CNS (e.g. Hartenstein and Jan, 1992), while other authors use it more broadly to include the covering of nerves (e.g. Banerjee et al., 2006). This ontology uses the term in its broad sense. 'Blood-brain barrier' may refer to this (e.g. Limmer et al., 2014) or the subperineurial glial sheath alone (e.g. Morante et al., 2013).

Axiom
annotated source: perineurium
annotated property: definition
annotated target: The outer two layers of glial cells that cover the central nervous system and the nerves. The outer layer is the perineurial glial sheath (sometimes referred to as the perineurial sheath outer layer); the inner layer is the subperineurial glial sheath (sometimes referred to as the perineurial sheath inner layer).
database_cross_reference: FlyBase:FBrf0057603
database_cross_reference: FlyBase:FBrf0191040
database_cross_reference: FlyBase:FBrf0226917
database_cross_reference: FlyBase:FBrf0239343

Axiom
annotated source: perineurium
annotated property: hasRelatedSynonym
annotated target: blood-brain barrier
database_cross_reference: FlyBase:FBrf0226917

subperineurial glial sheath
type: Class
subclass of: portion of tissue
subclass of: Restriction
  on property: part of
  some values from: perineurium
subclass of: Restriction
  on property: attached to
  some values from: perineurial glial sheath
definition: Inner glial cell layer of the perineurium that is probably not derived from the mesoderm (Edwards et al., 1994). This layer form an ion permeability barrier, functionally similar to the endothelial cells of the mammalian blood-brain barrier (Limmer et al., 2014).
database_cross_reference: VFB:FBbt_00007091
has exact synonym: barrier glial cell layer
has exact synonym: sub-perineurial glial sheath
has OBO namespace: fly_anatomy.ontology
has related synonym: blood-brain barrier
id: FBbt:00007091
comment: That the subperineurial glial cells do not derive from the mesoderm is suggested by Edwards et al. (1994), in which they show the presence of these cells in delta (FBgn0000463) mutant embryos. 'Blood-brain barrier' may refer to this (e.g. Morante et al., 2013) or the perineurium (e.g. Limmer et al., 2014), which includes this and the perineurial glial sheath.

Axiom
annotated source: subperineurial glial sheath
annotated property: definition
annotated target: Inner glial cell layer of the perineurium that is probably not derived from the mesoderm (Edwards et al., 1994). This layer form an ion permeability barrier, functionally similar to the endothelial cells of the mammalian blood-brain barrier (Limmer et al., 2014).
database_cross_reference: FlyBase:FBrf0057603
database_cross_reference: FlyBase:FBrf0058936
database_cross_reference: FlyBase:FBrf0226917
database_cross_reference: FlyBase:FBrf0239343

Axiom
annotated source: subperineurial glial sheath
annotated property: hasRelatedSynonym
annotated target: blood-brain barrier
database_cross_reference: FlyBase:FBrf0223187

cell body rind of the central nervous system
type: Class
subclass of: multi-tissue structure
subclass of: Restriction
  on property: part of
  some values from: central nervous system
definition: Superficial neuronal layer of the central nervous system, composed of glia and the cell bodies of neurons (soma). The cell body rind lies under the perineurium.
database_cross_reference: VFB:FBbt_00007114
has exact synonym: cortex of the central nervous system
has exact synonym: perikaryal rind
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007114

Axiom
annotated source: cell body rind of the central nervous system
annotated property: definition
annotated target: Superficial neuronal layer of the central nervous system, composed of glia and the cell bodies of neurons (soma). The cell body rind lies under the perineurium.
database_cross_reference: FlyBase:FBrf0239343

Axiom
annotated source: cell body rind of the central nervous system
annotated property: hasExactSynonym
annotated target: perikaryal rind
database_cross_reference: FlyBase:FBrf0207181

larval neuroblast
type: Class
equivalent class: Class
  intersection of: neuroblast
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: neuroblast
subclass of: Restriction
  on property: part of
  some values from: larval central nervous system
definition: Any neuroblast of the larva.
has broad synonym: embryonic/larval neuroblast
database_cross_reference: VFB:FBbt_00007115
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007115
in subset: cur

Axiom
annotated source: larval neuroblast
annotated property: definition
annotated target: Any neuroblast of the larva.
database_cross_reference: FlyBase:FBrf0047815

presumptive embryonic/larval system
type: Class
equivalent class: Class
  intersection of: non-connected developing system
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: developing embryonic structure
subclass of: non-connected developing system
definition: The sum of all the developing presumptive components of a specific embryonic/larval system in an embryo.
database_cross_reference: UBERON:6007116
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007116

Axiom
annotated source: presumptive embryonic/larval system
annotated property: definition
annotated target: The sum of all the developing presumptive components of a specific embryonic/larval system in an embryo.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

sensillum
type: Class
equivalent class: Class
  intersection of: cell cluster organ
  intersection of: Restriction
    on property: capable of
    some values from: GO_0050906
subclass of: sense organ
subclass of: cell cluster organ
definition: A sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organized unit with a largely bona fide boundary.
database_cross_reference: UBERON:0002536
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007152
in subset: FB gloss
in subset: larval OF

Axiom
annotated source: sensillum
annotated property: definition
annotated target: A sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organized unit with a largely bona fide boundary.
database_cross_reference: FlyBase:FBrf0111704

cell cluster organ
type: Class
subclass of: multicellular structure
definition: A cluster of cells of various types which form a discrete structure with a largely bona fide boundary.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-10-21T12:18:17Z
database_cross_reference: UBERON:0010001
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007229

Axiom
annotated source: cell cluster organ
annotated property: definition
annotated target: A cluster of cells of various types which form a discrete structure with a largely bona fide boundary.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

external sensillum
type: Class
subclass of: external sensory organ
subclass of: sensillum
subclass of: Restriction
  on property: develops from
  some values from: external sensory organ precursor cell I
definition: Sensillum which is embedded in the body wall and has a specific cuticular structure involved in the transduction of some sensory signal as a part.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-10-21T01:57:59Z
database_cross_reference: UBERON:6007231
database_cross_reference: VFB:FBbt_00007231
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007231
comment: This is a parent term for the mechanosensory bristles referred to as external sensilla (es) in some references e.g. Tsubouchi et al., 2017 (FBrf0237124), but also includes other modalities.

Axiom
annotated source: external sensillum
annotated property: definition
annotated target: Sensillum which is embedded in the body wall and has a specific cuticular structure involved in the transduction of some sensory signal as a part.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

eo-type sensillum
type: Class
subclass of: external sensillum
definition: Sensillum with an innervated external cuticular sensory structure consisting of one or more bipolar sensory neurons, and 3 support cells: a trichogen cell which makes the external cuticular sensory structure, a thecogen cell which makes the socket that holds the base of the external sensory structure and a tormogen cell which makes the cuticular matrix (cap) at the tip of the innervating dendrite(s).
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-10-21T02:02:05Z
database_cross_reference: UBERON:6007232
database_cross_reference: VFB:FBbt_00007232
has OBO namespace: fly_anatomy.ontology
has related synonym: eso
id: FBbt:00007232

Axiom
annotated source: eo-type sensillum
annotated property: definition
annotated target: Sensillum with an innervated external cuticular sensory structure consisting of one or more bipolar sensory neurons, and 3 support cells: a trichogen cell which makes the external cuticular sensory structure, a thecogen cell which makes the socket that holds the base of the external sensory structure and a tormogen cell which makes the cuticular matrix (cap) at the tip of the innervating dendrite(s).
database_cross_reference: FlyBase:FBrf0089570

adult sensillum
type: Class
equivalent class: Class
  intersection of: sensillum
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: adult sense organ
subclass of: sensillum
definition: Any sensillum of the adult.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-10-22T09:42:58Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007239

Axiom
annotated source: adult sensillum
annotated property: definition
annotated target: Any sensillum of the adult.
database_cross_reference: FBC:Autogenerated

larval sensillum
type: Class
equivalent class: Class
  intersection of: sensillum
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: larval sense organ
subclass of: sensillum
definition: Any sensillum of the larva.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-10-22T09:42:58Z
database_cross_reference: UBERON:6007240
has exact synonym: embryonic/larval sensillum
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007240

Axiom
annotated source: larval sensillum
annotated property: definition
annotated target: Any sensillum of the larva.
database_cross_reference: FBC:Autogenerated

adult head sensillum
type: Class
equivalent class: Class
  intersection of: sensillum
  intersection of: Restriction
    on property: part of
    some values from: adult head
subclass of: head sensillum
subclass of: adult sensillum
subclass of: Restriction
  on property: part of
  some values from: adult head
definition: Any sensillum (FBbt:00007152) that is part of some adult head (FBbt:00003007).
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-10-22T09:42:58Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007241

Axiom
annotated source: adult head sensillum
annotated property: definition
annotated target: Any sensillum (FBbt:00007152) that is part of some adult head (FBbt:00003007).
database_cross_reference: FBC:Autogenerated

embryonic/larval head sensillum
type: Class
equivalent class: Class
  intersection of: sensillum
  intersection of: Restriction
    on property: part of
    some values from: larval head
subclass of: head sensillum
subclass of: larval sensillum
subclass of: embryonic/larval head sense organ
definition: Any sensillum (FBbt:00007152) that is part of some larval head (FBbt:00001730).
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-10-22T09:42:58Z
database_cross_reference: UBERON:6007242
has exact synonym: larval head sensillum
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007242

Axiom
annotated source: embryonic/larval head sensillum
annotated property: definition
annotated target: Any sensillum (FBbt:00007152) that is part of some larval head (FBbt:00001730).
database_cross_reference: FBC:Autogenerated

embryonic/larval thoracic sensillum
type: Class
equivalent class: Class
  intersection of: sensillum
  intersection of: Restriction
    on property: part of
    some values from: larval thorax
subclass of: larval sensillum
subclass of: Restriction
  on property: part of
  some values from: larval thorax
definition: Any sensillum (FBbt:00007152) that is part of some larval thorax (FBbt:00001741).
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-10-22T10:46:09Z
has exact synonym: larval thoracic sensillum
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007244

Axiom
annotated source: embryonic/larval thoracic sensillum
annotated property: definition
annotated target: Any sensillum (FBbt:00007152) that is part of some larval thorax (FBbt:00001741).
database_cross_reference: FBC:Autogenerated

cuticular specialization
type: Class
subclass of: acellular anatomical structure
subclass of: Restriction
  on property: part of
  some values from: cuticle
definition: Specialized structure that is found on the cuticle.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-10-22T02:20:05Z
database_cross_reference: UBERON:6007245
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007245

Axiom
annotated source: cuticular specialization
annotated property: definition
annotated target: Specialized structure that is found on the cuticle.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

disconnected anatomical group
type: Class
subclass of: material anatomical entity
definition: Material anatomical entity generated by coordinated expression of the organism's own genome and whose component parts are not all continuous with each other.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-04T03:09:28Z
database_cross_reference: UBERON:0034923
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007276

Axiom
annotated source: disconnected anatomical group
annotated property: definition
annotated target: Material anatomical entity generated by coordinated expression of the organism's own genome and whose component parts are not all continuous with each other.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

anatomical cluster
type: Class
subclass of: disconnected anatomical group
definition: Anatomical group whose component anatomical structures lie in close proximity to each other.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-04T03:13:41Z
database_cross_reference: UBERON:0000477
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007277

Axiom
annotated source: anatomical cluster
annotated property: definition
annotated target: Anatomical group whose component anatomical structures lie in close proximity to each other.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

non-connected functional system
type: Class
subclass of: disconnected anatomical group
definition: An anatomical group whose component structures share a common function.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-04T03:18:01Z
database_cross_reference: UBERON:0015203
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007278

Axiom
annotated source: non-connected functional system
annotated property: definition
annotated target: An anatomical group whose component structures share a common function.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

embryonic/larval head sense organ
type: Class
equivalent class: Class
  intersection of: sense organ
  intersection of: Restriction
    on property: part of
    some values from: larval head
subclass of: larval sense organ
subclass of: Restriction
  on property: part of
  some values from: larval head
definition: Any sense organ (FBbt:00005155) that is part of some larval head (FBbt:00001730).
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-05T10:34:14Z
database_cross_reference: UBERON:6007280
database_cross_reference: VFB:FBbt_00007280
has exact synonym: larval head sense organ
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007280

Axiom
annotated source: embryonic/larval head sense organ
annotated property: definition
annotated target: Any sense organ (FBbt:00005155) that is part of some larval head (FBbt:00001730).
database_cross_reference: FBC:Autogenerated

region of integument
type: Class
subclass of: organ system subdivision
subclass of: Restriction
  on property: part of
  some values from: integumentary system
definition: A region of cuticle and its underlying epidermis.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-06T02:05:25Z
database_cross_reference: UBERON:6007284
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007284

Axiom
annotated source: region of integument
annotated property: definition
annotated target: A region of cuticle and its underlying epidermis.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

segmental subdivision of integument
type: Class
subclass of: segmental subdivision of organ system
subclass of: Restriction
  on property: part of
  some values from: integumentary system
definition: A segmental subdivision of the integument of the whole animal.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-06T02:12:48Z
database_cross_reference: UBERON:6007285
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007285

Axiom
annotated source: segmental subdivision of integument
annotated property: definition
annotated target: A segmental subdivision of the integument of the whole animal.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

integumentary specialization
type: Class
subclass of: anatomical entity
subclass of: Restriction
  on property: part of
  some values from: integumentary system
definition: Specialized structure that is found on the integument.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-06T03:13:52Z
database_cross_reference: UBERON:6007288
has exact synonym: integumentary specialisation
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007288

Axiom
annotated source: integumentary specialization
annotated property: definition
annotated target: Specialized structure that is found on the integument.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

tagmatic subdivision of integument
type: Class
subclass of: region of integument
subclass of: Restriction
  on property: part of
  some values from: tagma
definition: Region of integument with boundaries corresponding to those of a tagma.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-06T03:48:27Z
database_cross_reference: UBERON:6007289
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007289

Axiom
annotated source: tagmatic subdivision of integument
annotated property: definition
annotated target: Region of integument with boundaries corresponding to those of a tagma.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

syncytium
type: Class
subclass of: cell
definition: A multi-nucleate cell having no internal boundaries between nuclei.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-06T05:12:28Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007290

Axiom
annotated source: syncytium
annotated property: definition
annotated target: A multi-nucleate cell having no internal boundaries between nuclei.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

endocrine cell
type: Class
equivalent class: Class
  intersection of: cell
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: GO_0046879
      intersection of: Restriction
        on property: has target end location
        some values from: circulatory system
subclass of: cell
subclass of: endocrine system component
definition: Any cell (FBbt:00007002) that is capable of has target end location some hormone secretion (GO:0046879) that has target end location some circulatory system (FBbt:00005057).
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-17T03:42:33Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007294

Axiom
annotated source: endocrine cell
annotated property: definition
annotated target: Any cell (FBbt:00007002) that is capable of has target end location some hormone secretion (GO:0046879) that has target end location some circulatory system (FBbt:00005057).
database_cross_reference: FBC:Autogenerated

larval ventral sensory cluster group
type: Class
subclass of: sensory cluster
subclass of: Restriction
  on property: part of
  some values from: larva
subclass of: Restriction
  on property: develops from
  some values from: embryonic ventral sensory organ precursor cluster group
definition: Group of sense organs, and the somas and dendrites of sensory neurons, located ventrally in a larval segment (Campos-Ortega and Hartenstein, 1997). It lies outside the ventrolateral and ventral muscles, beneath the ventral insertion of the lateral transverse muscles (Campos-Ortega and Hartenstein, 1997). It can be divided into two smaller clusters (ventral and ventral'), with the axons of neurons of each cluster following a different branch of the segmental nerve (Willams and Shepherd, 1999). The pattern of sense organs and neurons is highly similar in segments A1-7, and slightly modified in the thoracic segments (Campos-Ortega and Hartenstein, 1997).
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-18T01:31:32Z
has exact synonym: ventral group of sensory organs
has OBO namespace: fly_anatomy.ontology
has related synonym: embryonic/larval thoracic/abdominal ventral sensory cluster
has related synonym: larval thoracic/abdominal ventral sensory cluster
id: FBbt:00007295
comment: Terminal (A8-10) segments have substantially different morphology, such that no 'ventral cluster' is present as seen in more anterior segments.

Axiom
annotated source: larval ventral sensory cluster group
annotated property: definition
annotated target: Group of sense organs, and the somas and dendrites of sensory neurons, located ventrally in a larval segment (Campos-Ortega and Hartenstein, 1997). It lies outside the ventrolateral and ventral muscles, beneath the ventral insertion of the lateral transverse muscles (Campos-Ortega and Hartenstein, 1997). It can be divided into two smaller clusters (ventral and ventral'), with the axons of neurons of each cluster following a different branch of the segmental nerve (Willams and Shepherd, 1999). The pattern of sense organs and neurons is highly similar in segments A1-7, and slightly modified in the thoracic segments (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0108300
database_cross_reference: FlyBase:FBrf0183734

Axiom
annotated source: larval ventral sensory cluster group
annotated property: hasExactSynonym
annotated target: ventral group of sensory organs
database_cross_reference: FlyBase:FBrf0089570

larval prothoracic ventral sensory cluster group
type: Class
equivalent class: Class
  intersection of: larval ventral sensory cluster group
  intersection of: Restriction
    on property: part of
    some values from: prothoracic segment
subclass of: larval thoracic ventral sensory cluster group
subclass of: Restriction
  on property: part of
  some values from: larval prothoracic segment
subclass of: Restriction
  on property: overlaps
  some values from: integument of larval prothoracic segment
definition: Any larval ventral sensory cluster group (FBbt:00007295) that is part of some prothoracic segment (FBbt:00000017).
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-18T02:00:12Z
has exact synonym: embryonic/larval prothoracic ventral sensory cluster group
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007306

Axiom
annotated source: larval prothoracic ventral sensory cluster group
annotated property: definition
annotated target: Any larval ventral sensory cluster group (FBbt:00007295) that is part of some prothoracic segment (FBbt:00000017).
database_cross_reference: FlyBase:FBrf0089570

larval mesothoracic ventral sensory cluster group
type: Class
equivalent class: Class
  intersection of: larval ventral sensory cluster group
  intersection of: Restriction
    on property: part of
    some values from: mesothoracic segment
subclass of: larval thoracic ventral sensory cluster group
subclass of: Restriction
  on property: part of
  some values from: larval mesothoracic segment
subclass of: Restriction
  on property: overlaps
  some values from: integument of larval mesothoracic segment
definition: Any larval ventral sensory cluster group (FBbt:00007295) that is part of some mesothoracic segment (FBbt:00000018).
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-18T02:00:12Z
has exact synonym: embryonic/larval mesothoracic ventral sensory cluster group
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007307

Axiom
annotated source: larval mesothoracic ventral sensory cluster group
annotated property: definition
annotated target: Any larval ventral sensory cluster group (FBbt:00007295) that is part of some mesothoracic segment (FBbt:00000018).
database_cross_reference: FlyBase:FBrf0089570

larval ventral sensory cluster group of A1-7
type: Class
equivalent class: Class
  intersection of: larval ventral sensory cluster group
  intersection of: Restriction
    on property: part of
    some values from: anterior abdominal segment
subclass of: larval ventral sensory cluster group
subclass of: Restriction
  on property: part of
  some values from: larval abdominal segment A1-7
subclass of: Restriction
  on property: overlaps
  some values from: integument of larval segment A1-7
subclass of: Restriction
  on property: develops from
  some values from: embryonic abdominal ventral sensory organ precursor cluster group
definition: Any larval ventral sensory cluster group (FBbt:00007295) that is part of some anterior abdominal segment (FBbt:00052393).
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-18T02:00:12Z
has OBO namespace: fly_anatomy.ontology
has related synonym: embryonic/larval ventral sensory cluster of A1-7
id: FBbt:00007309

Axiom
annotated source: larval ventral sensory cluster group of A1-7
annotated property: definition
annotated target: Any larval ventral sensory cluster group (FBbt:00007295) that is part of some anterior abdominal segment (FBbt:00052393).
database_cross_reference: FlyBase:FBrf0089570

integument of larval mesothoracic segment
type: Class
equivalent class: Class
  intersection of: segmental subdivision of larval integument
  intersection of: Restriction
    on property: part of
    some values from: mesothoracic segment
subclass of: integument of larval thoracic segment
subclass of: Restriction
  on property: part of
  some values from: larval mesothoracic segment
definition: The integument of the larval mesothoracic segment.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-18T02:11:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007310

Axiom
annotated source: integument of larval mesothoracic segment
annotated property: definition
annotated target: The integument of the larval mesothoracic segment.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

integument of larval prothoracic segment
type: Class
equivalent class: Class
  intersection of: segmental subdivision of larval integument
  intersection of: Restriction
    on property: part of
    some values from: prothoracic segment
subclass of: integument of larval thoracic segment
subclass of: Restriction
  on property: part of
  some values from: larval prothoracic segment
definition: The integument of the larval prothoracic segment.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-18T02:11:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007312

Axiom
annotated source: integument of larval prothoracic segment
annotated property: definition
annotated target: The integument of the larval prothoracic segment.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

integument of larval segment A1-7
type: Class
equivalent class: Class
  intersection of: segmental subdivision of larval integument
  intersection of: Restriction
    on property: part of
    some values from: anterior abdominal segment
subclass of: segmental subdivision of larval integument
subclass of: Restriction
  on property: part of
  some values from: larval abdominal segment A1-7
definition: The integument of the larval abdominal segments.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-18T02:11:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007313

Axiom
annotated source: integument of larval segment A1-7
annotated property: definition
annotated target: The integument of the larval abdominal segments.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

sensory cluster
type: Class
subclass of: BFO_0000040
subclass of: anatomical cluster
subclass of: Restriction
  on property: capable of
  some values from: GO_0050906
subclass of: Restriction
  on property: composed primarily of
  some values from: sensillum
definition: A cluster of sense organs in the integument or connected to it.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-20T03:51:03Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007316

Axiom
annotated source: sensory cluster
annotated property: definition
annotated target: A cluster of sense organs in the integument or connected to it.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

embryonic/larval head nerve
type: Class
equivalent class: Class
  intersection of: nerve
  intersection of: Restriction
    on property: part of
    some values from: larval head
subclass of: nerve
subclass of: Restriction
  on property: part of
  some values from: larval head
definition: Any nerve (FBbt:00005105) that is part of some larval head (FBbt:00001730).
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-11-20T07:54:36Z
database_cross_reference: VFB:FBbt_00007318
has exact synonym: larval head nerve
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007318

Axiom
annotated source: embryonic/larval head nerve
annotated property: definition
annotated target: Any nerve (FBbt:00005105) that is part of some larval head (FBbt:00001730).
database_cross_reference: FBC:Autogenerated

epidermal cell
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: epidermis
subclass of: epithelial cell
subclass of: Restriction
  on property: part of
  some values from: epidermis
definition: Any epithelial cell (FBbt:00000124) that is part of some epidermis (FBbt:00004993).
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-12-05T05:34:12Z
database_cross_reference: CL:0000463
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007325
in subset: scrnaseq slim

Axiom
annotated source: epidermal cell
annotated property: definition
annotated target: Any epithelial cell (FBbt:00000124) that is part of some epidermis (FBbt:00004993).
database_cross_reference: FBC:Autogenerated

organ system subdivision
type: Class
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: organ system
definition: Any subdivision of an organ system.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-12-12T07:22:29Z
database_cross_reference: UBERON:0011216
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007330

Axiom
annotated source: organ system subdivision
annotated property: definition
annotated target: Any subdivision of an organ system.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

segmental subdivision of organ system
type: Class
subclass of: organ system subdivision
definition: The part of some organism that is part of some specified segment.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-12-12T07:22:57Z
database_cross_reference: UBERON:6007331
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007331

Axiom
annotated source: segmental subdivision of organ system
annotated property: definition
annotated target: The part of some organism that is part of some specified segment.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

tagmatic subdivision of organ system
type: Class
subclass of: organ system subdivision
definition: The part of an organ system that is part of some specified tagma.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-12-12T07:23:28Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007332

Axiom
annotated source: tagmatic subdivision of organ system
annotated property: definition
annotated target: The part of an organ system that is part of some specified tagma.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

somatic stem cell
type: Class
subclass of: somatic precursor cell
subclass of: stem cell
definition: Stem cell that is a progenitor of somatic cells.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2009-06-25T05:38:39Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007344

Axiom
annotated source: somatic stem cell
annotated property: definition
annotated target: Stem cell that is a progenitor of somatic cells.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

larval thoracic ventral sensory cluster group
type: Class
equivalent class: Class
  intersection of: larval ventral sensory cluster group
  intersection of: Restriction
    on property: part of
    some values from: thoracic segment
subclass of: larval ventral sensory cluster group
subclass of: Restriction
  on property: part of
  some values from: larval thoracic segment
subclass of: Restriction
  on property: overlaps
  some values from: integument of larval thoracic segment
subclass of: Restriction
  on property: develops from
  some values from: embryonic thoracic ventral sensory organ precursor cluster group
definition: Any larval ventral sensory cluster group (FBbt:00007295) that is part of some thoracic segment (FBbt:00000016).
has exact synonym: embryonic/larval T1-3 ventral sensory cluster group
has exact synonym: embryonic/larval thoracic ventral sensory cluster group
has exact synonym: larval T1-3 ventral sensory cluster group
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007400

Axiom
annotated source: larval thoracic ventral sensory cluster group
annotated property: definition
annotated target: Any larval ventral sensory cluster group (FBbt:00007295) that is part of some thoracic segment (FBbt:00000016).
database_cross_reference: FlyBase:FBrf0089570

endocrine system component
type: Class
equivalent class: Class
  intersection of: material anatomical entity
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: GO_0046879
      intersection of: Restriction
        on property: has target end location
        some values from: circulatory system
subclass of: BFO_0000040
subclass of: material anatomical entity
subclass of: Restriction
  on property: part of
  some values from: endocrine system
subclass of: Restriction
  on property: capable of
  some values from: Class
    intersection of: GO_0046879
    intersection of: Restriction
      on property: has target end location
      some values from: circulatory system
definition: Any material anatomical entity (FBbt:00007016) that is capable of has target end location some hormone secretion (GO:0046879) that has target end location some circulatory system (FBbt:00005057).
has alternative id: FBbt:00007293
has exact synonym: endocrine organ
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007435
in subset: hidden assertion

Axiom
annotated source: endocrine system component
annotated property: definition
annotated target: Any material anatomical entity (FBbt:00007016) that is capable of has target end location some hormone secretion (GO:0046879) that has target end location some circulatory system (FBbt:00005057).
database_cross_reference: FBC:Autogenerated

endocrine neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: capable of
    some values from: Class
      intersection of: GO_0046879
      intersection of: Restriction
        on property: has target end location
        some values from: circulatory system
subclass of: neurosecretory neuron
subclass of: endocrine cell
definition: Any neuron (FBbt:00005106) that is capable of has target end location some hormone secretion (GO:0046879) that has target end location some circulatory system (FBbt:00005057).
contributor: https://orcid.org/0000-0002-7073-9172
date: 2010-03-12T01:16:37Z
database_cross_reference: VFB:FBbt_00007436
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007436

Axiom
annotated source: endocrine neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that is capable of has target end location some hormone secretion (GO:0046879) that has target end location some circulatory system (FBbt:00005057).
database_cross_reference: FBC:Autogenerated

prothoracic gland innervating neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: overlaps
    some values from: prothoracic gland
subclass of: larval neuron
subclass of: Restriction
  on property: overlaps
  some values from: prothoracic gland
definition: Any neuron (FBbt:00005106) that overlaps some prothoracic gland (FBbt:00001724).
database_cross_reference: VFB:FBbt_00007458
has OBO namespace: fly_anatomy.ontology
has related synonym: PG neuron
id: FBbt:00007458

Axiom
annotated source: prothoracic gland innervating neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that overlaps some prothoracic gland (FBbt:00001724).
database_cross_reference: FBC:Autogenerated

embryonic/larval corpus allatum innervating neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: part of
    some values from: larval nervous system
  intersection of: Restriction
    on property: overlaps
    some values from: embryonic/larval corpus allatum
subclass of: larval neuron
subclass of: Restriction
  on property: overlaps
  some values from: embryonic/larval corpus allatum
definition: Any neuron (FBbt:00005106) that is part of some larval nervous system (FBbt:00001911) and overlaps some embryonic/larval corpus allatum (FBbt:00001725).
database_cross_reference: VFB:FBbt_00007459
has OBO namespace: fly_anatomy.ontology
has related synonym: larval CA neuron
id: FBbt:00007459

Axiom
annotated source: embryonic/larval corpus allatum innervating neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that is part of some larval nervous system (FBbt:00001911) and overlaps some embryonic/larval corpus allatum (FBbt:00001725).
database_cross_reference: FBC:Autogenerated

embryonic/larval corpus cardiacum innervating neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: part of
    some values from: larval nervous system
  intersection of: Restriction
    on property: overlaps
    some values from: embryonic/larval corpus cardiacum
subclass of: larval neuron
subclass of: Restriction
  on property: overlaps
  some values from: embryonic/larval corpus cardiacum
definition: Any neuron (FBbt:00005106) that is part of some larval nervous system (FBbt:00001911) and overlaps some embryonic/larval corpus cardiacum (FBbt:00001726).
database_cross_reference: VFB:FBbt_00007460
has OBO namespace: fly_anatomy.ontology
has related synonym: larval CC neuron
id: FBbt:00007460

Axiom
annotated source: embryonic/larval corpus cardiacum innervating neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that is part of some larval nervous system (FBbt:00001911) and overlaps some embryonic/larval corpus cardiacum (FBbt:00001726).
database_cross_reference: FBC:Autogenerated

epithelial tube
type: Class
subclass of: epithelium
definition: A tubular epithelium.
database_cross_reference: UBERON:0003914
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007474

Axiom
annotated source: epithelial tube
annotated property: definition
annotated target: A tubular epithelium.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

nervous system of embryonic/larval thorax
type: Class
subclass of: tagmatic subdivision of organ system
subclass of: Restriction
  on property: part of
  some values from: larval nervous system
definition: The portion of the embryonic/larval nervous system that is part of the thorax.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2010-09-28T05:58:49Z
database_cross_reference: VFB:FBbt_00007485
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007485
in subset: cur

Axiom
annotated source: nervous system of embryonic/larval thorax
annotated property: definition
annotated target: The portion of the embryonic/larval nervous system that is part of the thorax.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

nervous system of embryonic/larval abdomen
type: Class
subclass of: tagmatic subdivision of organ system
subclass of: Restriction
  on property: part of
  some values from: larval nervous system
definition: The portion of the embryonic/larval nervous system that is part of the abdomen.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2010-09-28T06:02:33Z
database_cross_reference: VFB:FBbt_00007486
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007486
in subset: cur

Axiom
annotated source: nervous system of embryonic/larval abdomen
annotated property: definition
annotated target: The portion of the embryonic/larval nervous system that is part of the abdomen.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

embryonic/larval gut
type: Class
equivalent class: Class
  intersection of: gut
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: gut
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval alimentary canal
definition: Structure consisting of the embryonic/larval foregut, midgut and hindgut.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2010-10-04T09:58:25Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007512

Axiom
annotated source: embryonic/larval gut
annotated property: definition
annotated target: Structure consisting of the embryonic/larval foregut, midgut and hindgut.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

adult gut
type: Class
equivalent class: Class
  intersection of: gut
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: gut
subclass of: Restriction
  on property: part of
  some values from: adult alimentary canal
definition: Structure consisting of a simple epithelium surrounded by visceral muscles, nerves and tracheae. The adult gut is divided into the adult foregut, midgut and hindgut regions, based on developmental origin.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2010-10-04T11:02:39Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007513

Axiom
annotated source: adult gut
annotated property: definition
annotated target: Structure consisting of a simple epithelium surrounded by visceral muscles, nerves and tracheae. The adult gut is divided into the adult foregut, midgut and hindgut regions, based on developmental origin.
database_cross_reference: FlyBase:FBrf0223413
database_cross_reference: https://orcid.org/0000-0002-7073-9172

abdominal apodeme
type: Class
equivalent class: Class
  intersection of: apodeme
  intersection of: Restriction
    on property: part of
    some values from: abdomen
subclass of: apodeme
subclass of: Restriction
  on property: part of
  some values from: abdomen
definition: Any apodeme (FBbt:00005091) that is part of some abdomen (FBbt:00000020).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007585

Axiom
annotated source: abdominal apodeme
annotated property: definition
annotated target: Any apodeme (FBbt:00005091) that is part of some abdomen (FBbt:00000020).
database_cross_reference: FBC:Autogenerated

larval abdominal segment A1-7
type: Class
equivalent class: Class
  intersection of: anterior abdominal segment
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: larval abdominal segment
subclass of: anterior abdominal segment
definition: One of the first seven larval abdominal segments (counting from anterior to posterior). Larval segments 1-7 have almost identical musculature, gross tracheal morphology and sensory organ types and distribution.
has exact synonym: larval anterior abdominal segment
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007586

Axiom
annotated source: larval abdominal segment A1-7
annotated property: definition
annotated target: One of the first seven larval abdominal segments (counting from anterior to posterior). Larval segments 1-7 have almost identical musculature, gross tracheal morphology and sensory organ types and distribution.
database_cross_reference: FlyBase:FBrf0089570

CNS perineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: central nervous system
  intersection of: Restriction
    on property: part of
    some values from: perineurial glial sheath
subclass of: CNS surface glial cell
subclass of: perineurial glial cell
definition: Any glial cell (FBbt:00005144) that is part of some central nervous system (FBbt:00005094) and is part of some perineurial glial sheath (FBbt:00007089).
database_cross_reference: VFB:FBbt_00007597
has exact synonym: CNS perineurial sheath cell
has exact synonym: CNS perineurial sheath glial cell
has exact synonym: perineurial surface associated glial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007597

Axiom
annotated source: CNS perineurial glial cell
annotated property: definition
annotated target: Any glial cell (FBbt:00005144) that is part of some central nervous system (FBbt:00005094) and is part of some perineurial glial sheath (FBbt:00007089).
database_cross_reference: FBC:Autogenerated

embryonic/larval CNS subperineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: larval central nervous system
  intersection of: Restriction
    on property: part of
    some values from: subperineurial glial sheath
subclass of: CNS subperineurial glial cell
subclass of: embryonic/larval lateral glial cell
subclass of: embryonic/larval subperineurial glial cell
subclass of: Restriction
  on property: part of
  some values from: larval central nervous system
definition: Glial cell of the embryonic/larval CNS subperineurial glial sheath. These cells are rich in septate junctions and are a principal component of the larval blood-brain-barrier (Edwards and Meinertzhagen, 2010). They derive from the mesoderm (Edwards et al., 1993). In the larval abdomen there are typically 8 (but sometimes 9) subperineural glial cells per abdominal hemineuromere (Ito et al., 1995).
database_cross_reference: VFB:FBbt_00007598
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007598

Axiom
annotated source: embryonic/larval CNS subperineurial glial cell
annotated property: definition
annotated target: Glial cell of the embryonic/larval CNS subperineurial glial sheath. These cells are rich in septate junctions and are a principal component of the larval blood-brain-barrier (Edwards and Meinertzhagen, 2010). They derive from the mesoderm (Edwards et al., 1993). In the larval abdomen there are typically 8 (but sometimes 9) subperineural glial cells per abdominal hemineuromere (Ito et al., 1995).
database_cross_reference: FlyBase:FBrf0057603
database_cross_reference: FlyBase:FBrf0082171
database_cross_reference: FlyBase:FBrf0239343

CNS subperineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: central nervous system
  intersection of: Restriction
    on property: part of
    some values from: subperineurial glial sheath
subclass of: CNS surface glial cell
subclass of: subperineurial glial cell
definition: Subperineurial glia lies beneath the outer surface of the ventral nerve cord. Its nuclei and cell bodies are round and flat. Cytoplasmic extensions sometimes extend a short distance into the underlying cortex and fill the space between the outermost neuronal cell bodies.
database_cross_reference: VFB:FBbt_00007605
has exact synonym: SPG
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007605

Axiom
annotated source: CNS subperineurial glial cell
annotated property: definition
annotated target: Subperineurial glia lies beneath the outer surface of the ventral nerve cord. Its nuclei and cell bodies are round and flat. Cytoplasmic extensions sometimes extend a short distance into the underlying cortex and fill the space between the outermost neuronal cell bodies.
database_cross_reference: FlyBase:FBrf0082171

Axiom
annotated source: CNS subperineurial glial cell
annotated property: hasExactSynonym
annotated target: SPG
database_cross_reference: FlyBase:FBrf0082171

trichome field
type: Class
subclass of: BFO_0000040
subclass of: anatomical cluster
subclass of: Restriction
  on property: composed primarily of
  some values from: trichome
definition: A group of trichomes covering a region of integument.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007658

Axiom
annotated source: trichome field
annotated property: definition
annotated target: A group of trichomes covering a region of integument.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

embryonic/larval motor neuron
type: Class
equivalent class: Class
  intersection of: motor neuron
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: larval efferent neuron
subclass of: primary motor neuron
definition: Any motor neuron of the larva.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2013-03-12T05:13:50Z
database_cross_reference: VFB:FBbt_00007675
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007675
comment: Larval motor neurons are generally named according to the muscle(s) they innervate, meaning that their soma location may be in the same segment (segmental nerve neurons), or the next anterior segment (intersegmental nerve neurons) than given in the motor neuron name.

Axiom
annotated source: embryonic/larval motor neuron
annotated property: definition
annotated target: Any motor neuron of the larva.
database_cross_reference: FBC:Autogenerated

sensory system
type: Class
equivalent class: Class
  intersection of: non-connected functional system
  intersection of: Restriction
    on property: capable of
    some values from: GO_0007600
subclass of: BFO_0000040
subclass of: non-connected functional system
subclass of: Restriction
  on property: overlaps
  some values from: nervous system
subclass of: Restriction
  on property: capable of
  some values from: GO_0007600
definition: An anatomical system consisting of all of the anatomical entities that function in some part of the sensory perception.
database_cross_reference: UBERON:0001032
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007692
in subset: expressionslim flybase ribbon
comment: Note - the relationship of this class to the nervous system is overlap. This allows for sense organ components that function in the transduction of sensory signals but that are not considered to be part of the nervous system to be part of sensory systems.

Axiom
annotated source: sensory system
annotated property: definition
annotated target: An anatomical system consisting of all of the anatomical entities that function in some part of the sensory perception.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

sensory system neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: capable of part of
    some values from: GO_0007600
subclass of: neuron
subclass of: Restriction
  on property: part of
  some values from: sensory system
subclass of: Restriction
  on property: capable of part of
  some values from: GO_0007600
definition: Any neuron (FBbt:00005106) that capable of part of some sensory perception (GO:0007600).
database_cross_reference: VFB:FBbt_00007693
has OBO namespace: fly_anatomy.ontology
id: FBbt:00007693

Axiom
annotated source: sensory system neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that capable of part of some sensory perception (GO:0007600).
database_cross_reference: https://orcid.org/0000-0001-5948-3092

adult salivary gland proper
type: Class
subclass of: epithelial tube
subclass of: gland
subclass of: Restriction
  on property: part of
  some values from: adult salivary gland
subclass of: Restriction
  on property: capable of
  some values from: GO_0046541
definition: The secretory part of the adult salivary gland, located posterior to the left and right salivary gland ducts. It consists of an epithelial tube 5-10 cells around surrounded by a thin basement membrane. The cells are cuboidal cells with small basal nuclei and a single large vacuole which fills most of the cell.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00013137

Axiom
annotated source: adult salivary gland proper
annotated property: definition
annotated target: The secretory part of the adult salivary gland, located posterior to the left and right salivary gland ducts. It consists of an epithelial tube 5-10 cells around surrounded by a thin basement membrane. The cells are cuboidal cells with small basal nuclei and a single large vacuole which fills most of the cell.
database_cross_reference: FlyBase:FBrf0007735

adult gnathal ganglion
type: Class
equivalent class: Class
  intersection of: gnathal ganglion
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: gnathal ganglion
subclass of: Class
  intersection of: Restriction
    on property: part of
    some values from: adult central brain
  intersection of: Restriction
    on property: part of
    some values from: adult subesophageal zone
subclass of: Restriction
  on property: part of
  some values from: adult subesophageal zone
subclass of: Restriction
  on property: develops from
  some values from: larval gnathal ganglion
definition: Ventral region of the adult brain, consisting of the fused ganglia of the three gnathal neuromeres; mandibular, maxillary and labial (Ito et al., 2014). It is found beneath the esophagus in the ventral part of the subesophageal zone (Ito et al., 2014).
database_cross_reference: VFB:FBbt_00014013
has exact synonym: GNG
has OBO namespace: fly_anatomy.ontology
has related synonym: SEG
has related synonym: SOG
has related synonym: adult subesophageal ganglion
has related synonym: ipsl
has related synonym: suboesophageal ganglion
id: FBbt:00014013
in subset: BrainName
in subset: cur
comment: This term refers to what used to be called subesophageal ganglion (SOG). The new name, together with cerebral ganglia (CRG), denote the segmental neuromeres of the brain (the 3 caudal and 3 rostral, respectively). These are distinguishable from supra- and subesophageal zones, as these refer to the neuropil masses above and below the esophagus and do not respect neuromere boundaries (Ito et al., 2014). The posterior part of the GNG also corresponds to part of the inferior ipsl of Otsuna and Ito (2006) and to the ventral part of the subesophageal ganglion (SOG) of Chiang et al. (2011) (Ito et al., 2014).

Axiom
annotated source: adult gnathal ganglion
annotated property: definition
annotated target: Ventral region of the adult brain, consisting of the fused ganglia of the three gnathal neuromeres; mandibular, maxillary and labial (Ito et al., 2014). It is found beneath the esophagus in the ventral part of the subesophageal zone (Ito et al., 2014).
database_cross_reference: FlyBase:FBrf0212704
database_cross_reference: FlyBase:FBrf0224194

Axiom
annotated source: adult gnathal ganglion
annotated property: hasExactSynonym
annotated target: GNG
database_cross_reference: FlyBase:FBrf0224194
has synonym type: BRAIN NAME ABV

Axiom
annotated source: adult gnathal ganglion
annotated property: hasRelatedSynonym
annotated target: SEG
database_cross_reference: FlyBase:FBrf0224194

Axiom
annotated source: adult gnathal ganglion
annotated property: hasRelatedSynonym
annotated target: SOG
database_cross_reference: FlyBase:FBrf0212704

Axiom
annotated source: adult gnathal ganglion
annotated property: hasRelatedSynonym
annotated target: ipsl
database_cross_reference: FlyBase:FBrf0193607

Axiom
annotated source: adult gnathal ganglion
annotated property: hasRelatedSynonym
annotated target: suboesophageal ganglion
database_cross_reference: FlyBase:FBrf0080339

early extended germ band embryo
type: Class
subclass of: extended germ band embryo
definition: A collective term for stages 9 and 10.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00014201
in subset: cur

Axiom
annotated source: early extended germ band embryo
annotated property: definition
annotated target: A collective term for stages 9 and 10.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

salivary gland common duct anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: salivary gland duct inclusive primordium
subclass of: Restriction
  on property: develops into
  some values from: salivary gland common duct primordium
definition: A(n) anlage that develops into some salivary gland common duct primordium. It develops from some salivary gland duct inclusive primordium.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00016004
in subset: cur

Axiom
annotated source: salivary gland common duct anlage
annotated property: definition
annotated target: A(n) anlage that develops into some salivary gland common duct primordium. It develops from some salivary gland duct inclusive primordium.
database_cross_reference: FBC:Autogenerated

salivary gland common duct primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: part of
  some values from: presumptive embryonic salivary gland
subclass of: Restriction
  on property: develops from
  some values from: salivary gland common duct anlage
subclass of: Restriction
  on property: develops into
  some values from: embryonic/larval salivary gland common duct
definition: Primordium of the dorsal closure embryo that will give rise to the salivary gland common duct.
has alternative id: FBbt:00005623
has exact synonym: P1 SalCD
has exact synonym: embryonic salivary gland common duct
has OBO namespace: fly_anatomy.ontology
id: FBbt:00016005
in subset: cur

Axiom
annotated source: salivary gland common duct primordium
annotated property: definition
annotated target: Primordium of the dorsal closure embryo that will give rise to the salivary gland common duct.
database_cross_reference: FlyBase:FBrf0064792

Axiom
annotated source: salivary gland common duct primordium
annotated property: hasExactSynonym
annotated target: P1 SalCD
database_cross_reference: https://orcid.org/0000-0002-7073-9172

adult salivary gland anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: develops from
  some values from: salivary gland duct inclusive primordium
subclass of: Restriction
  on property: develops into
  some values from: embryonic primordium of adult salivary gland
definition: Primordium of the late extended germ band embryo that will give rise to the embryonic primordium of the adult salivary gland.
has exact synonym: A AdSal
has exact synonym: adult salivary gland specific anlage
has OBO namespace: fly_anatomy.ontology
id: FBbt:00016006
in subset: cur

Axiom
annotated source: adult salivary gland anlage
annotated property: definition
annotated target: Primordium of the late extended germ band embryo that will give rise to the embryonic primordium of the adult salivary gland.
database_cross_reference: FBC:VH
database_cross_reference: https://orcid.org/0000-0001-5948-3092

Axiom
annotated source: adult salivary gland anlage
annotated property: hasExactSynonym
annotated target: A AdSal
database_cross_reference: https://orcid.org/0000-0002-7073-9172

Axiom
annotated source: adult salivary gland anlage
annotated property: hasExactSynonym
annotated target: adult salivary gland specific anlage
database_cross_reference: https://orcid.org/0000-0002-7073-9172

ventral trunk epidermis primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: ventral epidermis primordium
subclass of: Restriction
  on property: develops into
  some values from: embryonic ventral trunk epidermis
definition: Primordium of the ventral trunk epidermis of the late extended germ band and dorsal closure embryo that will give rise to the embryonic ventral trunk epidermis.
has exact synonym: P1 VenEp
has OBO namespace: fly_anatomy.ontology
id: FBbt:00016007
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: ventral trunk epidermis primordium
annotated property: definition
annotated target: Primordium of the ventral trunk epidermis of the late extended germ band and dorsal closure embryo that will give rise to the embryonic ventral trunk epidermis.
database_cross_reference: FBC:VH

Axiom
annotated source: ventral trunk epidermis primordium
annotated property: hasExactSynonym
annotated target: P1 VenEp
database_cross_reference: https://orcid.org/0000-0002-7073-9172

anal pad primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: ventral epidermis primordium
subclass of: Restriction
  on property: develops into
  some values from: embryonic anal pad
definition: Primordium of the anal pad of the late extended germ band and dorsal closure embryo that will give rise to the embryonic anal pads.
has OBO namespace: fly_anatomy.ontology
has related synonym: A/P1 AnPd
has related synonym: anal pad specific anlage
id: FBbt:00016008
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: anal pad primordium
annotated property: definition
annotated target: Primordium of the anal pad of the late extended germ band and dorsal closure embryo that will give rise to the embryonic anal pads.
database_cross_reference: FBC:VH

Axiom
annotated source: anal pad primordium
annotated property: hasRelatedSynonym
annotated target: A/P1 AnPd
database_cross_reference: https://orcid.org/0000-0002-7073-9172

ventral apodeme anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: develops from
  some values from: ventral epidermis primordium
subclass of: Restriction
  on property: develops into
  some values from: ventral apodeme primordium
definition: Anlage of the ventral apodeme of the late extended germ band embryo that will give rise to the ventral apodeme primordium.
has exact synonym: A venApo
has OBO namespace: fly_anatomy.ontology
id: FBbt:00016009
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: ventral apodeme anlage
annotated property: definition
annotated target: Anlage of the ventral apodeme of the late extended germ band embryo that will give rise to the ventral apodeme primordium.
database_cross_reference: FBC:VH

Axiom
annotated source: ventral apodeme anlage
annotated property: hasExactSynonym
annotated target: A venApo
database_cross_reference: https://orcid.org/0000-0002-7073-9172

ventral apodeme primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: ventral apodeme anlage
subclass of: Restriction
  on property: develops into
  some values from: embryonic ventral apodeme
definition: Primordium of the ventral apodeme of the dorsal closure embryo that will give rise to the ventral apodemes.
has exact synonym: P1 venApo
has OBO namespace: fly_anatomy.ontology
has related synonym: ventral apodeme specific primordium
id: FBbt:00016010
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: ventral apodeme primordium
annotated property: definition
annotated target: Primordium of the ventral apodeme of the dorsal closure embryo that will give rise to the ventral apodemes.
database_cross_reference: FBC:VH

Axiom
annotated source: ventral apodeme primordium
annotated property: hasExactSynonym
annotated target: P1 venApo
database_cross_reference: https://orcid.org/0000-0002-7073-9172

denticle field primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: denticle field anlage
subclass of: Restriction
  on property: develops into
  some values from: denticle field
definition: Primordium of the denticle field of the dorsal closure embryo that will give rise to the larval denticle fields.
has exact synonym: P DenBl
has OBO namespace: fly_anatomy.ontology
id: FBbt:00016011
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: denticle field primordium
annotated property: definition
annotated target: Primordium of the denticle field of the dorsal closure embryo that will give rise to the larval denticle fields.
database_cross_reference: FBC:VH

Axiom
annotated source: denticle field primordium
annotated property: hasExactSynonym
annotated target: P DenBl
database_cross_reference: https://orcid.org/0000-0002-7073-9172

denticle field
type: Class
subclass of: trichome field
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval cuticle
subclass of: Restriction
  on property: develops from
  some values from: denticle field primordium
definition: Region of embryonic and larval ventral cuticle that displays denticle belts. It develops from the denticle field primordium.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00016012
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: denticle field
annotated property: definition
annotated target: Region of embryonic and larval ventral cuticle that displays denticle belts. It develops from the denticle field primordium.
database_cross_reference: FBC:VH
database_cross_reference: FlyBase:FBrf0089570

dorsal trunk epidermis primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: dorsal ectoderm derivative
subclass of: Restriction
  on property: develops from
  some values from: dorsal epidermis primordium
subclass of: Restriction
  on property: develops into
  some values from: embryonic dorsal epidermis
definition: A(n) primordium that develops into some embryonic dorsal epidermis. It develops from some dorsal epidermis primordium.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00016019
in subset: cur

Axiom
annotated source: dorsal trunk epidermis primordium
annotated property: definition
annotated target: A(n) primordium that develops into some embryonic dorsal epidermis. It develops from some dorsal epidermis primordium.
database_cross_reference: FBC:Autogenerated

dorsal apodeme anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: dorsal ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: develops from
  some values from: dorsal epidermis primordium
subclass of: Restriction
  on property: develops into
  some values from: dorsal apodeme primordium
definition: Anlage of the embryonic dorsal apodeme in the late extended germ band embryo.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00016020
in subset: cur

Axiom
annotated source: dorsal apodeme anlage
annotated property: definition
annotated target: Anlage of the embryonic dorsal apodeme in the late extended germ band embryo.
database_cross_reference: FBC:VH

dorsal apodeme primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: dorsal ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: dorsal apodeme anlage
subclass of: Restriction
  on property: develops into
  some values from: embryonic dorsal apodeme
definition: Primordium of the embryonic dorsal apodeme in the dorsal closure embryo.
has OBO namespace: fly_anatomy.ontology
has related synonym: dorsal apodeme specific anlage
id: FBbt:00016021
in subset: cur

Axiom
annotated source: dorsal apodeme primordium
annotated property: definition
annotated target: Primordium of the embryonic dorsal apodeme in the dorsal closure embryo.
database_cross_reference: FBC:VH

abdominal histoblast primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: dorsal ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: abdominal histoblast anlage
subclass of: Restriction
  on property: develops into
  some values from: histoblast
definition: A(n) primordium that develops into some histoblast. It develops from some abdominal histoblast anlage.
database_cross_reference: UBERON:6016022
has OBO namespace: fly_anatomy.ontology
has related synonym: abdominal histoblast specific anlage
id: FBbt:00016022
in subset: cur

Axiom
annotated source: abdominal histoblast primordium
annotated property: definition
annotated target: A(n) primordium that develops into some histoblast. It develops from some abdominal histoblast anlage.
database_cross_reference: FBC:Autogenerated

dorsal sensory complex proper primordium
type: Class
subclass of: developing embryonic structure
subclass of: sensory nervous system primordium
subclass of: dorsal ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: dorsal sensory complex primordium
subclass of: Restriction
  on property: develops into
  some values from: embryonic dorsal sensory organ precursor cluster
definition: A(n) primordium that develops into some embryonic dorsal sensory organ precursor cluster. It develops from some dorsal sensory complex primordium.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00016023
in subset: cur

Axiom
annotated source: dorsal sensory complex proper primordium
annotated property: definition
annotated target: A(n) primordium that develops into some embryonic dorsal sensory organ precursor cluster. It develops from some dorsal sensory complex primordium.
database_cross_reference: FBC:Autogenerated

ring gland primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: Restriction
  on property: develops into
  some values from: larval ring gland
definition: Primordium that develops into some component of the larval ring gland.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00017009
in subset: cur

salivary gland duct inclusive primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: ventral ectoderm derivative
subclass of: Class
  intersection of: Restriction
    on property: develops into
    some values from: salivary gland common duct anlage
  intersection of: Restriction
    on property: develops into
    some values from: adult salivary gland anlage
subclass of: Restriction
  on property: part of
  some values from: early extended germ band embryo
definition: A(n) primordium that develops into some adult salivary gland anlage and some salivary gland common duct anlage. It develops from some ventral ectoderm.
has OBO namespace: fly_anatomy.ontology
has related synonym: P2 iSalD
has related synonym: salivary gland duct specific anlage
id: FBbt:00017018
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: salivary gland duct inclusive primordium
annotated property: definition
annotated target: A(n) primordium that develops into some adult salivary gland anlage and some salivary gland common duct anlage. It develops from some ventral ectoderm.
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: salivary gland duct inclusive primordium
annotated property: hasRelatedSynonym
annotated target: P2 iSalD
database_cross_reference: https://orcid.org/0000-0002-7073-9172

oenocyte primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: dorsal ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: part of
  some values from: dorsal closure embryo
subclass of: Restriction
  on property: develops from
  some values from: dorsal epidermis primordium
subclass of: Restriction
  on property: develops into
  some values from: abdominal larval oenocyte group
definition: A 'whorl' of larval oenocyte precursors which forms transiently around each 'chordotonal precursor cell C1' during stage 11. It ceases to exist when these cells delaminate during stages 11 and 12.
has OBO namespace: fly_anatomy.ontology
has related synonym: oenocyte specific anlage
id: FBbt:00017020
in subset: cur

Axiom
annotated source: oenocyte primordium
annotated property: definition
annotated target: A 'whorl' of larval oenocyte precursors which forms transiently around each 'chordotonal precursor cell C1' during stage 11. It ceases to exist when these cells delaminate during stages 11 and 12.
database_cross_reference: FlyBase:FBrf0180129

abdominal histoblast anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: dorsal ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: develops from
  some values from: dorsal epidermis primordium
subclass of: Restriction
  on property: develops into
  some values from: abdominal histoblast primordium
definition: A(n) anlage that develops into some abdominal histoblast primordium. It develops from some dorsal epidermis primordium.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00017021
in subset: cur

Axiom
annotated source: abdominal histoblast anlage
annotated property: definition
annotated target: A(n) anlage that develops into some abdominal histoblast primordium. It develops from some dorsal epidermis primordium.
database_cross_reference: FBC:Autogenerated

ectodermal derivative
type: Class
equivalent class: Class
  intersection of: anatomical entity
  intersection of: Restriction
    on property: develops from
    some values from: ectoderm
subclass of: germ layer derivative
subclass of: Restriction
  on property: develops from
  some values from: ectoderm
definition: Any anatomical entity (FBbt:10000000) that develops from some ectoderm (FBbt:00000111).
has alternative id: FBbt:00005253
has OBO namespace: fly_anatomy.ontology
id: FBbt:00025990
in subset: cur

Axiom
annotated source: ectodermal derivative
annotated property: definition
annotated target: Any anatomical entity (FBbt:10000000) that develops from some ectoderm (FBbt:00000111).
database_cross_reference: FlyBase:FBrf0043441
database_cross_reference: FlyBase:FBrf0053832

anterior ectoderm derivative
type: Class
equivalent class: Class
  intersection of: anatomical entity
  intersection of: Restriction
    on property: develops from
    some values from: anterior ectoderm
subclass of: ectodermal derivative
subclass of: Restriction
  on property: develops from
  some values from: anterior ectoderm
definition: Any anatomical entity (FBbt:10000000) that develops from some anterior ectoderm (FBbt:00000119).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00025991
in subset: cur

Axiom
annotated source: anterior ectoderm derivative
annotated property: definition
annotated target: Any anatomical entity (FBbt:10000000) that develops from some anterior ectoderm (FBbt:00000119).
database_cross_reference: https://orcid.org/0000-0002-7073-9172

posterior ectoderm derivative
type: Class
equivalent class: Class
  intersection of: anatomical entity
  intersection of: Restriction
    on property: develops from
    some values from: posterior ectoderm
subclass of: ectodermal derivative
subclass of: Restriction
  on property: develops from
  some values from: posterior ectoderm
definition: Any anatomical entity (FBbt:10000000) that develops from some posterior ectoderm (FBbt:00000122).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00025992
in subset: cur

Axiom
annotated source: posterior ectoderm derivative
annotated property: definition
annotated target: Any anatomical entity (FBbt:10000000) that develops from some posterior ectoderm (FBbt:00000122).
database_cross_reference: https://orcid.org/0000-0002-7073-9172

ventral ectoderm derivative
type: Class
equivalent class: Class
  intersection of: anatomical entity
  intersection of: Restriction
    on property: develops from
    some values from: ventral ectoderm
subclass of: ectodermal derivative
subclass of: Restriction
  on property: develops from
  some values from: ventral ectoderm
definition: Any anatomical entity (FBbt:10000000) that develops from some ventral ectoderm (FBbt:00005558).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00025993
in subset: cur

Axiom
annotated source: ventral ectoderm derivative
annotated property: definition
annotated target: Any anatomical entity (FBbt:10000000) that develops from some ventral ectoderm (FBbt:00005558).
database_cross_reference: https://orcid.org/0000-0002-7073-9172

endodermal derivative
type: Class
equivalent class: Class
  intersection of: anatomical entity
  intersection of: Restriction
    on property: develops from
    some values from: endoderm
subclass of: germ layer derivative
subclass of: Restriction
  on property: develops from
  some values from: endoderm
definition: Any anatomical entity (FBbt:10000000) that develops from some endoderm (FBbt:00000125).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00025994
in subset: cur

Axiom
annotated source: endodermal derivative
annotated property: definition
annotated target: Any anatomical entity (FBbt:10000000) that develops from some endoderm (FBbt:00000125).
database_cross_reference: FlyBase:FBrf0043441
database_cross_reference: FlyBase:FBrf0053832

posterior endoderm derivative
type: Class
equivalent class: Class
  intersection of: anatomical entity
  intersection of: Restriction
    on property: develops from
    some values from: posterior endoderm
subclass of: endodermal derivative
subclass of: Restriction
  on property: develops from
  some values from: posterior endoderm
definition: Any anatomical entity (FBbt:10000000) that develops from some posterior endoderm (FBbt:00005560).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00025995
in subset: cur

Axiom
annotated source: posterior endoderm derivative
annotated property: definition
annotated target: Any anatomical entity (FBbt:10000000) that develops from some posterior endoderm (FBbt:00005560).
database_cross_reference: https://orcid.org/0000-0002-7073-9172

mesodermal derivative
type: Class
equivalent class: Class
  intersection of: anatomical entity
  intersection of: Restriction
    on property: develops from
    some values from: mesoderm
subclass of: germ layer derivative
subclass of: Restriction
  on property: develops from
  some values from: mesoderm
definition: Any anatomical entity (FBbt:10000000) that develops from some mesoderm (FBbt:00000126).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00025998
in subset: cur

Axiom
annotated source: mesodermal derivative
annotated property: definition
annotated target: Any anatomical entity (FBbt:10000000) that develops from some mesoderm (FBbt:00000126).
database_cross_reference: FlyBase:FBrf0043441
database_cross_reference: FlyBase:FBrf0053832

trunk mesoderm derivative
type: Class
equivalent class: Class
  intersection of: anatomical entity
  intersection of: Restriction
    on property: develops from
    some values from: trunk mesoderm
subclass of: mesodermal derivative
subclass of: Restriction
  on property: develops from
  some values from: trunk mesoderm
definition: Any anatomical entity (FBbt:10000000) that develops from some trunk mesoderm (FBbt:00000128).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00026000
in subset: cur

Axiom
annotated source: trunk mesoderm derivative
annotated property: definition
annotated target: Any anatomical entity (FBbt:10000000) that develops from some trunk mesoderm (FBbt:00000128).
database_cross_reference: https://orcid.org/0000-0002-7073-9172

visceral trunk mesoderm derivative
type: Class
equivalent class: Class
  intersection of: anatomical entity
  intersection of: Restriction
    on property: develops from
    some values from: visceral trunk mesoderm
subclass of: trunk mesoderm derivative
subclass of: Restriction
  on property: develops from
  some values from: visceral trunk mesoderm
definition: Any anatomical entity (FBbt:10000000) that develops from some visceral trunk mesoderm (FBbt:00000130).
has OBO namespace: fly_anatomy.ontology
id: FBbt:00026002
in subset: cur

Axiom
annotated source: visceral trunk mesoderm derivative
annotated property: definition
annotated target: Any anatomical entity (FBbt:10000000) that develops from some visceral trunk mesoderm (FBbt:00000130).
database_cross_reference: https://orcid.org/0000-0002-7073-9172

non-connected developing system
type: Class
subclass of: developing material anatomical entity
subclass of: disconnected anatomical group
definition: The sum of all the anlagen and primordia that will develop into a single system.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2010-04-29T07:57:11Z
database_cross_reference: UBERON:6040003
has OBO namespace: fly_anatomy.ontology
id: FBbt:00040003
comment: Note - this may be the precursor of a connected system that starts out non-connected, such as the tracheal system, or of a system that remains disconnected, e.g. functionally defined systems such as the endocrine system.

Axiom
annotated source: non-connected developing system
annotated property: definition
annotated target: The sum of all the anlagen and primordia that will develop into a single system.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

tract neuropil
type: Class
subclass of: disconnected anatomical group
subclass of: Restriction
  on property: part of
  some values from: neuropil
definition: The part of the neuropil consisting largely of neuron projections without synapses.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2009-08-12T06:11:19Z
database_cross_reference: VFB:FBbt_00040004
has OBO namespace: fly_anatomy.ontology
has related synonym: fibrous neuropil
id: FBbt:00040004

Axiom
annotated source: tract neuropil
annotated property: definition
annotated target: The part of the neuropil consisting largely of neuron projections without synapses.
database_cross_reference: FlyBase:FBrf0224194

fat cell
type: Class
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: adipose system
subclass of: Restriction
  on property: expresses
  some values from: FBgn0002565
subclass of: Restriction
  on property: expresses
  some values from: FBgn0027945
subclass of: Restriction
  on property: expresses
  some values from: FBgn0087002
definition: A cell that is the principal cell type of the fat body and is filled with lipid droplets.
contributor: https://orcid.org/0000-0002-0027-0858
date: 2017-09-05T16:19:14Z
has exact synonym: adipocyte
has exact synonym: adipose cell
has exact synonym: fat body cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00046052
in subset: scrnaseq slim
comment: Adult and larval fat cells are specifically marked by Lsp2 expression, with greater expression at the larval stage (Lazareva et al., 2007 - FBrf0192478; Chintapalli et al., 2007 - FBrf0200485; Armstrong et al., 2014 - FBrf0226784). There is also relatively high expression of ppl and apollp in adult and larval fat cells (Colombani et al., 2003 - FBrf0161991; Chintapalli et al., 2007; Brankatschk and Eaton, 2010 - FBrf0211445).

Axiom
annotated source: fat cell
annotated property: definition
annotated target: A cell that is the principal cell type of the fat body and is filled with lipid droplets.
database_cross_reference: FlyBase:FBrf0017184
database_cross_reference: FlyBase:FBrf0238315

Axiom
annotated source: fat cell
annotated property: hasExactSynonym
annotated target: adipose cell
database_cross_reference: FlyBase:FBrf0017184

adult neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: neuron
subclass of: Restriction
  on property: part of
  some values from: adult nervous system
definition: A neuron that is part of the adult nervous system. These can be born during the postembryonic phase of neurogenesis (Lacin and Truman, 2016) or they can develop from larval neurons during the pupal stage (Veverytsa and Allan, 2013).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-02-19T16:52:12Z
database_cross_reference: VFB:FBbt_00047095
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047095

Axiom
annotated source: adult neuron
annotated property: definition
annotated target: A neuron that is part of the adult nervous system. These can be born during the postembryonic phase of neurogenesis (Lacin and Truman, 2016) or they can develop from larval neurons during the pupal stage (Veverytsa and Allan, 2013).
database_cross_reference: FlyBase:FBrf0221900
database_cross_reference: FlyBase:FBrf0231327

primary neuron
type: Class
subclass of: neuron
definition: A neuron that is born during the embryonic phase of neurogenesis. These have functions in the larva (Lacin and Truman, 2016) and may be remodeled during metamorphosis to function during the adult stage (Veverytsa and Allan, 2013). In the larva, neurons of the same primary lineage have stereotyped cell body positions, with later-born primary neurons positioned further from the neuropil, and they share 1-2 fascicles by which they enter the neuropil (Mark et al., 2021).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-02-21T09:20:52Z
database_cross_reference: VFB:FBbt_00047097
has exact synonym: embryonic neuron
has exact synonym: primary lineage neuron
has OBO namespace: fly_anatomy.ontology
has related synonym: embryonic lineage neuron
has related synonym: larval neuron
id: FBbt:00047097

Axiom
annotated source: primary neuron
annotated property: definition
annotated target: A neuron that is born during the embryonic phase of neurogenesis. These have functions in the larva (Lacin and Truman, 2016) and may be remodeled during metamorphosis to function during the adult stage (Veverytsa and Allan, 2013). In the larva, neurons of the same primary lineage have stereotyped cell body positions, with later-born primary neurons positioned further from the neuropil, and they share 1-2 fascicles by which they enter the neuropil (Mark et al., 2021).
database_cross_reference: FlyBase:FBrf0221900
database_cross_reference: FlyBase:FBrf0231327
database_cross_reference: FlyBase:FBrf0249021

Axiom
annotated source: primary neuron
annotated property: hasExactSynonym
annotated target: embryonic neuron
database_cross_reference: FlyBase:FBrf0231327

Axiom
annotated source: primary neuron
annotated property: hasRelatedSynonym
annotated target: embryonic lineage neuron
database_cross_reference: FlyBase:FBrf0090460

gut
type: Class
subclass of: multi-tissue structure
subclass of: Restriction
  on property: part of
  some values from: alimentary canal
definition: Structure consisting of a simple epithelium surrounded by visceral muscles, nerves and tracheae. The gut is divided into foregut, midgut and hindgut regions, based on developmental origin.
contributor: https://orcid.org/0000-0002-1373-1705
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047143

Axiom
annotated source: gut
annotated property: definition
annotated target: Structure consisting of a simple epithelium surrounded by visceral muscles, nerves and tracheae. The gut is divided into foregut, midgut and hindgut regions, based on developmental origin.
database_cross_reference: FlyBase:FBrf0223413

anus
type: Class
subclass of: gut section
subclass of: Restriction
  on property: part of
  some values from: rectum
definition: Posterior opening of the hindgut.
contributor: https://orcid.org/0000-0002-1373-1705
database_cross_reference: UBERON:0001245
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047153

Axiom
annotated source: anus
annotated property: definition
annotated target: Posterior opening of the hindgut.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

gonadal sheath epithelium
type: Class
equivalent class: Class
  intersection of: epithelium
  intersection of: Restriction
    on property: part of
    some values from: gonadal sheath
subclass of: epithelium
subclass of: Restriction
  on property: part of
  some values from: gonadal sheath
definition: Epithelial component of the gonadal sheath.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2018-05-30T13:30:55Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047208

Axiom
annotated source: gonadal sheath epithelium
annotated property: definition
annotated target: Epithelial component of the gonadal sheath.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

flight muscle motor neuron
type: Class
equivalent class: Class
  intersection of: motor neuron
  intersection of: Restriction
    on property: sends synaptic output to cell
    some values from: flight muscle cell
subclass of: adult motor neuron
subclass of: adult VNC neuron
subclass of: Restriction
  on property: sends synaptic output to cell
  some values from: flight muscle cell
definition: Any motor neuron (FBbt:00005123) that sends synaptic output to some flight muscle cell (FBbt:00003360).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2018-06-14T13:59:26Z
database_cross_reference: VFB:FBbt_00047247
has exact synonym: wing MN
has exact synonym: wing motoneuron
has exact synonym: wing motor neuron
has exact synonym: wing muscle motor neuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047247

Axiom
annotated source: flight muscle motor neuron
annotated property: definition
annotated target: Any motor neuron (FBbt:00005123) that sends synaptic output to some flight muscle cell (FBbt:00003360).
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: flight muscle motor neuron
annotated property: hasExactSynonym
annotated target: wing motoneuron
database_cross_reference: doi:10.1101/2023.05.31.542897

adult abdominal nerve
type: Class
equivalent class: Class
  intersection of: abdominal nerve
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: abdominal nerve
subclass of: Class
  intersection of: Restriction
    on property: part of
    some values from: adult abdomen
  intersection of: Restriction
    on property: part of
    some values from: adult peripheral nervous system
definition: Nerve of the adult abdomen.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-01-13T12:50:51Z
database_cross_reference: VFB:FBbt_00047357
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047357

Axiom
annotated source: adult abdominal nerve
annotated property: definition
annotated target: Nerve of the adult abdomen.
database_cross_reference: FlyBase:FBrf0007196
database_cross_reference: FlyBase:FBrf0246815

larval abdominal nerve
type: Class
equivalent class: Class
  intersection of: abdominal nerve
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: abdominal nerve
subclass of: Class
  intersection of: Restriction
    on property: part of
    some values from: larval abdomen
  intersection of: Restriction
    on property: part of
    some values from: larval peripheral nervous system
definition: Nerve of the larval abdomen.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-01-13T13:19:16Z
database_cross_reference: VFB:FBbt_00047362
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047362

Axiom
annotated source: larval abdominal nerve
annotated property: definition
annotated target: Nerve of the larval abdomen.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

adult persistent motor neuron
type: Class
equivalent class: Class
  intersection of: motor neuron
  intersection of: Restriction
    on property: part of
    some values from: adult
  intersection of: Restriction
    on property: develops from
    some values from: embryonic/larval motor neuron
subclass of: adult motor neuron
subclass of: primary motor neuron
subclass of: Restriction
  on property: develops from
  some values from: embryonic/larval motor neuron
definition: Motor neuron of the adult that has persisted from the larva, usually with some remodeling (Banerjee et al., 2016).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2018-08-07T13:23:42Z
database_cross_reference: VFB:FBbt_00047487
has exact synonym: persistent larval motor neuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047487

Axiom
annotated source: adult persistent motor neuron
annotated property: definition
annotated target: Motor neuron of the adult that has persisted from the larva, usually with some remodeling (Banerjee et al., 2016).
database_cross_reference: FlyBase:FBrf0234013

Axiom
annotated source: adult persistent motor neuron
annotated property: hasExactSynonym
annotated target: persistent larval motor neuron
database_cross_reference: FlyBase:FBrf0234013

adult descending neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: adult head
  intersection of: Restriction
    on property: fasciculates with
    some values from: adult cervical connective
subclass of: adult neuron
subclass of: Restriction
  on property: has soma location
  some values from: adult head
subclass of: Restriction
  on property: fasciculates with
  some values from: adult cervical connective
definition: Any neuron with a cell body in the head and a process in the cervical connective. There are approximately 350 of these on each side of the brain (Namiki et al., 2018).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2018-08-09T07:54:53Z
database_cross_reference: VFB:FBbt_00047511
has exact synonym: DN
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047511
comment: Namiki et al. (2018) operationally define a descending neuron as having a cell body in the brain and a process in the cervical connective, however, they include one neuron with a cell body in the head, but not the brain. This term encompasses such neurons - https://orcid.org/0000-0002-1373-1705.

Axiom
annotated source: adult descending neuron
annotated property: definition
annotated target: Any neuron with a cell body in the head and a process in the cervical connective. There are approximately 350 of these on each side of the brain (Namiki et al., 2018).
database_cross_reference: FlyBase:FBrf0239335

Axiom
annotated source: adult descending neuron
annotated property: hasExactSynonym
annotated target: DN
database_cross_reference: FlyBase:FBrf0239335

descending neuron of the gnathal ganglion
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: cell body rind of adult gnathal ganglion
  intersection of: Restriction
    on property: fasciculates with
    some values from: adult cervical connective
subclass of: adult descending neuron
subclass of: gnathal ganglion neuron
subclass of: adult CNS neuron
subclass of: Restriction
  on property: has soma location
  some values from: cell body rind of adult gnathal ganglion
IAO_0000028: DNg
definition: Adult descending neuron with a cell body in the gnathal ganglion.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2018-08-09T08:59:09Z
database_cross_reference: VFB:FBbt_00047516
has exact synonym: DNg
has exact synonym: DSOG
has exact synonym: descending neuron of the GNG
has exact synonym: descending subesophageal neuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047516

Axiom
annotated source: descending neuron of the gnathal ganglion
annotated property: IAO_0000028
annotated target: DNg
database_cross_reference: FlyBase:FBrf0239335

Axiom
annotated source: descending neuron of the gnathal ganglion
annotated property: definition
annotated target: Adult descending neuron with a cell body in the gnathal ganglion.
database_cross_reference: FlyBase:FBrf0239335

Axiom
annotated source: descending neuron of the gnathal ganglion
annotated property: hasExactSynonym
annotated target: DNg
database_cross_reference: FlyBase:FBrf0239335
has synonym type: VFB SYMBOL

Axiom
annotated source: descending neuron of the gnathal ganglion
annotated property: hasExactSynonym
annotated target: DSOG
database_cross_reference: FlyBase:FBrf0225542

Axiom
annotated source: descending neuron of the gnathal ganglion
annotated property: hasExactSynonym
annotated target: descending subesophageal neuron
database_cross_reference: FlyBase:FBrf0225542

neuron projection bundle of adult ventral nerve cord
type: Class
equivalent class: Class
  intersection of: neuron projection bundle
  intersection of: Restriction
    on property: overlaps
    some values from: adult ventral nerve cord
subclass of: neuron projection bundle
subclass of: Restriction
  on property: part of
  some values from: adult nervous system
subclass of: Restriction
  on property: overlaps
  some values from: adult ventral nerve cord
definition: Any neuron projection bundle that carries fibers through part of the ventral nerve cord of the adult.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2018-08-10T09:16:32Z
database_cross_reference: VFB:FBbt_00047528
has exact synonym: neuron projection bundle of thoracico-abdominal ganglion
has exact synonym: neuron projection bundle of ventral nervous system
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047528

Axiom
annotated source: neuron projection bundle of adult ventral nerve cord
annotated property: definition
annotated target: Any neuron projection bundle that carries fibers through part of the ventral nerve cord of the adult.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

neuron projection bundle of larval ventral nerve cord
type: Class
equivalent class: Class
  intersection of: neuron projection bundle
  intersection of: Restriction
    on property: overlaps
    some values from: larval ventral nerve cord
subclass of: neuron projection bundle
subclass of: Restriction
  on property: part of
  some values from: larval nervous system
subclass of: Restriction
  on property: overlaps
  some values from: larval ventral nerve cord
definition: Any neuron projection bundle that carries fibers through part of the ventral nerve cord of the larva.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2018-08-14T15:21:08Z
database_cross_reference: VFB:FBbt_00047551
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047551

Axiom
annotated source: neuron projection bundle of larval ventral nerve cord
annotated property: definition
annotated target: Any neuron projection bundle that carries fibers through part of the ventral nerve cord of the larva.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

imaginal tissue
type: Class
subclass of: developing material anatomical entity
definition: Any group of similar imaginal cells, such as an imaginal disc, imaginal ring or imaginal island, or a precursor tissue that forms one of them. These tissues develop separately from other embryonic and larval tissues and they generate adult structures during metamorphosis.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2018-08-15T09:31:08Z
has exact synonym: imaginal structure
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047552
in subset: expressionslim flybase ribbon

Axiom
annotated source: imaginal tissue
annotated property: definition
annotated target: Any group of similar imaginal cells, such as an imaginal disc, imaginal ring or imaginal island, or a precursor tissue that forms one of them. These tissues develop separately from other embryonic and larval tissues and they generate adult structures during metamorphosis.
database_cross_reference: FlyBase:FBrf0064789

Axiom
annotated source: imaginal tissue
annotated property: hasExactSynonym
annotated target: imaginal structure
database_cross_reference: FlyBase:FBrf0053815

cell body rind of larval gnathal ganglion
type: Class
subclass of: cell body rind region
subclass of: Restriction
  on property: part of
  some values from: cell body rind of larval central nervous system
subclass of: Restriction
  on property: part of
  some values from: larval gnathal ganglion
definition: Region of the larval cell body rind that overlies the neuropil of the larval gnathal ganglion.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2018-10-01T08:07:20Z
database_cross_reference: VFB:FBbt_00047751
has exact synonym: cell body rind of larval subesophageal ganglion
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047751

Axiom
annotated source: cell body rind of larval gnathal ganglion
annotated property: definition
annotated target: Region of the larval cell body rind that overlies the neuropil of the larval gnathal ganglion.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

embryonic/larval lateral glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: larval nervous system
  intersection of: Restriction
    on property: expresses
    some values from: FBgn0011701
subclass of: larval glial cell
subclass of: Restriction
  on property: expresses
  some values from: FBgn0011701
definition: Any glial cell of the embryo or larva that derives from the neurogenic region of the ectoderm. Their identity is established by the expression of the gene glial cells missing (gcm), which results in expression of reversed polarity (repo), often used as a marker for lateral glia (Jacobs, 2000). This includes perineurial and subperineurial glia of the central and peripheral nervous systems, cell body (cortex) glia, wrapping glia and some of the neuropil associated glia (Beckervordersandforth et al., 2008). There are around 25 of these per abdominal hemisegment in a stage 16 embryo (Beckervordersandforth et al., 2008).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2018-10-22T12:36:01Z
database_cross_reference: VFB:FBbt_00047861
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047861

Axiom
annotated source: embryonic/larval lateral glial cell
annotated property: definition
annotated target: Any glial cell of the embryo or larva that derives from the neurogenic region of the ectoderm. Their identity is established by the expression of the gene glial cells missing (gcm), which results in expression of reversed polarity (repo), often used as a marker for lateral glia (Jacobs, 2000). This includes perineurial and subperineurial glia of the central and peripheral nervous systems, cell body (cortex) glia, wrapping glia and some of the neuropil associated glia (Beckervordersandforth et al., 2008). There are around 25 of these per abdominal hemisegment in a stage 16 embryo (Beckervordersandforth et al., 2008).
database_cross_reference: FlyBase:FBrf0128507
database_cross_reference: FlyBase:FBrf0205499

adult central brain
type: Class
subclass of: central brain
subclass of: Restriction
  on property: part of
  some values from: adult brain
definition: Adult brain excluding the optic lobes. This consists of the cerebrum and the gnathal ganglion.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2018-10-24T14:35:45Z
database_cross_reference: VFB:FBbt_00047887
has exact synonym: midbrain
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047887

Axiom
annotated source: adult central brain
annotated property: definition
annotated target: Adult brain excluding the optic lobes. This consists of the cerebrum and the gnathal ganglion.
database_cross_reference: FlyBase:FBrf0224194

Axiom
annotated source: adult central brain
annotated property: hasExactSynonym
annotated target: midbrain
database_cross_reference: FlyBase:FBrf0224194

central brain
type: Class
subclass of: multi-tissue structure
subclass of: Restriction
  on property: part of
  some values from: brain
definition: Brain excluding the optic lobes.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2018-10-24T15:11:55Z
database_cross_reference: VFB:FBbt_00047888
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047888

Axiom
annotated source: central brain
annotated property: definition
annotated target: Brain excluding the optic lobes.
database_cross_reference: FlyBase:FBrf0224194
database_cross_reference: https://orcid.org/0000-0002-1373-1705

larval abdominal nerve sensory neuron
type: Class
equivalent class: Class
  intersection of: sensory neuron
  intersection of: Restriction
    on property: fasciculates with
    some values from: larval abdominal nerve
subclass of: embryonic/larval sensory neuron
subclass of: larval PNS neuron
subclass of: Restriction
  on property: part of
  some values from: larval peripheral nervous system
subclass of: Restriction
  on property: fasciculates with
  some values from: larval abdominal nerve
definition: Any sensory neuron that enters the larval central nervous system via an abdominal nerve. These neurons receive sensory input from internal and external sensory organs of the peripheral nervous system. They may respond to proprioceptive, tactile, nociceptive or other stimuli.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2018-11-14T11:29:15Z
database_cross_reference: VFB:FBbt_00047944
has OBO namespace: fly_anatomy.ontology
id: FBbt:00047944

Axiom
annotated source: larval abdominal nerve sensory neuron
annotated property: definition
annotated target: Any sensory neuron that enters the larval central nervous system via an abdominal nerve. These neurons receive sensory input from internal and external sensory organs of the peripheral nervous system. They may respond to proprioceptive, tactile, nociceptive or other stimuli.
database_cross_reference: FlyBase:FBrf0234450

adult motor neuron
type: Class
equivalent class: Class
  intersection of: motor neuron
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: motor neuron
subclass of: adult efferent neuron
definition: Any motor neuron of the adult.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2019-03-01T18:49:04Z
database_cross_reference: VFB:FBbt_00048235
has OBO namespace: fly_anatomy.ontology
id: FBbt:00048235

Axiom
annotated source: adult motor neuron
annotated property: definition
annotated target: Any motor neuron of the adult.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

male-specific neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has characteristic
    some values from: PATO_0060002
subclass of: male-specific anatomical entity
subclass of: sexually-dimorphic neuron
definition: Neuron of the male that is not found in the female.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2019-03-14T09:36:37Z
database_cross_reference: VFB:FBbt_00048239
has OBO namespace: fly_anatomy.ontology
id: FBbt:00048239

Axiom
annotated source: male-specific neuron
annotated property: definition
annotated target: Neuron of the male that is not found in the female.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

adult ascending neuron
type: Class
subclass of: adult neuron
subclass of: Restriction
  on property: fasciculates with
  some values from: adult cervical connective
subclass of: Restriction
  on property: overlaps
  some values from: adult brain
definition: Any adult neuron with its cell body in the thorax or abdomen (including appendages and ventral nerve cord) that passes through the cervical connective to the brain.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2019-04-29T15:20:25Z
database_cross_reference: VFB:FBbt_00048301
has OBO namespace: fly_anatomy.ontology
id: FBbt:00048301

Axiom
annotated source: adult ascending neuron
annotated property: definition
annotated target: Any adult neuron with its cell body in the thorax or abdomen (including appendages and ventral nerve cord) that passes through the cervical connective to the brain.
database_cross_reference: FlyBase:FBrf0237124

thoracic limb primordium
type: Class
subclass of: developing embryonic structure
subclass of: primordium
subclass of: Class
  intersection of: Restriction
    on property: develops into
    some values from: dorsal thoracic disc primordium
  intersection of: Restriction
    on property: develops into
    some values from: ventral thoracic disc primordium
  intersection of: Restriction
    on property: develops into
    some values from: Keilin organ
subclass of: Restriction
  on property: part of
  some values from: ectoderm
subclass of: Restriction
  on property: part of
  some values from: embryonic thoracic segment
definition: Cluster of cells in the ventrolateral ectoderm in the embryonic thorax that will eventually give rise to a dorsal imaginal disc, a ventral (leg) imaginal disc and a Keilin organ in the larva. The three different cellular identities cannot be distinguished at stage 11, but can by stage 14. There is one per thoracic hemisegment (six total).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2019-08-23T09:38:06Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00048408

Axiom
annotated source: thoracic limb primordium
annotated property: definition
annotated target: Cluster of cells in the ventrolateral ectoderm in the embryonic thorax that will eventually give rise to a dorsal imaginal disc, a ventral (leg) imaginal disc and a Keilin organ in the larva. The three different cellular identities cannot be distinguished at stage 11, but can by stage 14. There is one per thoracic hemisegment (six total).
database_cross_reference: FlyBase:FBrf0183907

male-specific anatomical entity
type: Class
equivalent class: Class
  intersection of: anatomical entity
  intersection of: Restriction
    on property: has characteristic
    some values from: PATO_0060002
subclass of: anatomical entity
subclass of: Restriction
  on property: part of
  some values from: male organism
subclass of: Restriction
  on property: has characteristic
  some values from: PATO_0060002
definition: Anatomical entity of the male that is not found in the same form in the female. If there is a counterpart in the female, the male and female types are substantially different.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2019-11-11T10:56:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00048490
comment: For example, the testis is male-specific since it is substantially different to the ovary, which may be considered to be the female-specific counterpart. A male wing is not substantially different to a female wing, so is not considered male-specific.

Axiom
annotated source: male-specific anatomical entity
annotated property: definition
annotated target: Anatomical entity of the male that is not found in the same form in the female. If there is a counterpart in the female, the male and female types are substantially different.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

larval ring gland
type: Class
subclass of: ring gland
subclass of: Restriction
  on property: part of
  some values from: larval endocrine system
definition: A closely associated cluster of three neuroendocrine glands of the late embryo or larva, located anterior to the brain and dorsal to the esophagus (de Velasco et al., 2004). It consists of the corpus cardiacum posteroventrally (closest to the brain), the prothoracic gland laterally (forming most of the ring gland) and the corpus allatum anterodorsally (furthest from the brain) (de Velasco et al., 2004). It is innervated by neurons of the nerve of the corpus cardiacum and the aorta passes through it (de Velasco et al., 2004).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-02-08T14:06:45Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049277

Axiom
annotated source: larval ring gland
annotated property: definition
annotated target: A closely associated cluster of three neuroendocrine glands of the late embryo or larva, located anterior to the brain and dorsal to the esophagus (de Velasco et al., 2004). It consists of the corpus cardiacum posteroventrally (closest to the brain), the prothoracic gland laterally (forming most of the ring gland) and the corpus allatum anterodorsally (furthest from the brain) (de Velasco et al., 2004). It is innervated by neurons of the nerve of the corpus cardiacum and the aorta passes through it (de Velasco et al., 2004).
database_cross_reference: FlyBase:FBrf0064803
database_cross_reference: FlyBase:FBrf0179777
database_cross_reference: FlyBase:FBrf0194938
database_cross_reference: FlyBase:FBrf0239029

adult VNC perineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: adult ventral nerve cord
  intersection of: Restriction
    on property: part of
    some values from: perineurial glial sheath
subclass of: CNS perineurial glial cell
subclass of: adult perineurial glial cell
subclass of: adult CNS glial cell
subclass of: Restriction
  on property: part of
  some values from: adult ventral nerve cord
definition: Perineurial glial cell of the adult ventral nerve cord. These cells have a varied morphology, ranging from elongated to square-shaped, with orientation mostly along the medial-lateral axis (Kremer et al., 2017).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-05-13T15:41:00Z
database_cross_reference: VFB:FBbt_00049485
has exact synonym: adult TAG perineurial glial cell
has exact synonym: adult VNC PNG
has exact synonym: adult VNS PNG
has exact synonym: adult VNS perineurial glial cell
has exact synonym: adult thoracico-abdominal ganglion perineurial glial cell
has exact synonym: adult ventral nerve cord PNG
has exact synonym: adult ventral nervous system PNG
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049485

Axiom
annotated source: adult VNC perineurial glial cell
annotated property: definition
annotated target: Perineurial glial cell of the adult ventral nerve cord. These cells have a varied morphology, ranging from elongated to square-shaped, with orientation mostly along the medial-lateral axis (Kremer et al., 2017).
database_cross_reference: FlyBase:FBrf0234767

Axiom
annotated source: adult VNC perineurial glial cell
annotated property: hasExactSynonym
annotated target: adult ventral nerve cord PNG
database_cross_reference: FlyBase:FBrf0234767

adult PNS perineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: adult peripheral nervous system
  intersection of: Restriction
    on property: part of
    some values from: perineurial glial sheath
subclass of: adult perineurial glial cell
subclass of: PNS perineurial glial cell
subclass of: adult PNS glial cell
definition: Perineurial glial cell of the peripheral nervous system. Each cell forms a narrow strip along the long axis of the nerve, without covering its entire circumference (Kremer et al., 2017).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-05-14T08:24:47Z
database_cross_reference: VFB:FBbt_00049487
has exact synonym: adult PNS PNG
has exact synonym: adult peripheral nervous system perineurial glial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049487

Axiom
annotated source: adult PNS perineurial glial cell
annotated property: definition
annotated target: Perineurial glial cell of the peripheral nervous system. Each cell forms a narrow strip along the long axis of the nerve, without covering its entire circumference (Kremer et al., 2017).
database_cross_reference: FlyBase:FBrf0234767

Axiom
annotated source: adult PNS perineurial glial cell
annotated property: hasExactSynonym
annotated target: adult PNS PNG
database_cross_reference: FlyBase:FBrf0234767

adult PNS subperineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: adult peripheral nervous system
  intersection of: Restriction
    on property: part of
    some values from: subperineurial glial sheath
subclass of: adult subperineurial glial cell
subclass of: PNS subperineurial glial cell
subclass of: adult PNS glial cell
definition: Subperineurial glial cell of the peripheral nervous system. These cells can individually form elongated tubes around small peripheral nerves, but larger nerves are enclosed by multiple subperineurial cells (Kremer et al., 2017).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-05-14T09:21:18Z
database_cross_reference: VFB:FBbt_00049488
has exact synonym: adult PNS SPG
has exact synonym: adult peripheral nervous system subperineurial glial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049488

Axiom
annotated source: adult PNS subperineurial glial cell
annotated property: definition
annotated target: Subperineurial glial cell of the peripheral nervous system. These cells can individually form elongated tubes around small peripheral nerves, but larger nerves are enclosed by multiple subperineurial cells (Kremer et al., 2017).
database_cross_reference: FlyBase:FBrf0234767

Axiom
annotated source: adult PNS subperineurial glial cell
annotated property: hasExactSynonym
annotated target: adult PNS SPG
database_cross_reference: FlyBase:FBrf0234767

adult central brain cell body glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: adult brain cell body rind
  intersection of: Restriction
    on property: part of
    some values from: adult central brain
subclass of: adult brain cell body glial cell
subclass of: Restriction
  on property: part of
  some values from: adult central brain
definition: Glial cell of the adult that is associated with the cell body rind of the central brain. One cell can wrap around 20 to 100 cell bodies, but some cell bodies are wrapped by two neighboring glial cells (Kremer et al., 2017). They have an overall globular shape with fine lamellae protruding into surrounding areas (Kremer et al., 2017).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-05-14T10:16:17Z
database_cross_reference: VFB:FBbt_00049489
has exact synonym: adult central brain CG
has exact synonym: adult central brain cortex associated glial cell
has OBO namespace: fly_anatomy.ontology
has related synonym: adult central brain cortex glial cell
id: FBbt:00049489

Axiom
annotated source: adult central brain cell body glial cell
annotated property: definition
annotated target: Glial cell of the adult that is associated with the cell body rind of the central brain. One cell can wrap around 20 to 100 cell bodies, but some cell bodies are wrapped by two neighboring glial cells (Kremer et al., 2017). They have an overall globular shape with fine lamellae protruding into surrounding areas (Kremer et al., 2017).
database_cross_reference: FlyBase:FBrf0234767

Axiom
annotated source: adult central brain cell body glial cell
annotated property: hasExactSynonym
annotated target: adult central brain CG
database_cross_reference: FlyBase:FBrf0234767

larval descending neuron to VNC
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: cell body rind of larval brain
  intersection of: Restriction
    on property: has synaptic IO in region
    some values from: larval ventral nerve cord
subclass of: larval descending neuron
subclass of: Restriction
  on property: has synaptic IO in region
  some values from: larval ventral nerve cord
definition: Descending neuron of the larva with its soma in the brain and processes extending into the ventral nerve cord (Winding et al. (2023).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-05-26T11:44:42Z
database_cross_reference: VFB:FBbt_00049517
has exact synonym: larval DNVNC
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049517

Axiom
annotated source: larval descending neuron to VNC
annotated property: definition
annotated target: Descending neuron of the larva with its soma in the brain and processes extending into the ventral nerve cord (Winding et al. (2023).
database_cross_reference: FlyBase:FBrf0255988

Axiom
annotated source: larval descending neuron to VNC
annotated property: hasExactSynonym
annotated target: larval DNVNC
database_cross_reference: FlyBase:FBrf0255988

cell body rind of larval central nervous system
type: Class
subclass of: cell body rind of the central nervous system
subclass of: Restriction
  on property: part of
  some values from: larval central nervous system
definition: Superficial layer of neuronal cell bodies and glia that overlies the neuropil of the larval central nervous system.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-06-15T13:37:38Z
database_cross_reference: VFB:FBbt_00049602
has exact synonym: larval cortex
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049602

Axiom
annotated source: cell body rind of larval central nervous system
annotated property: definition
annotated target: Superficial layer of neuronal cell bodies and glia that overlies the neuropil of the larval central nervous system.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

cell body rind of adult central nervous system
type: Class
subclass of: cell body rind of the central nervous system
subclass of: Restriction
  on property: part of
  some values from: adult central nervous system
definition: Superficial layer of neuronal cell bodies and glia that overlies the neuropil of the adult central nervous system (brain or ventral nerve cord).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-06-15T13:45:27Z
database_cross_reference: VFB:FBbt_00049603
has exact synonym: adult cortex
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049603

Axiom
annotated source: cell body rind of adult central nervous system
annotated property: definition
annotated target: Superficial layer of neuronal cell bodies and glia that overlies the neuropil of the adult central nervous system (brain or ventral nerve cord).
database_cross_reference: https://orcid.org/0000-0002-1373-1705

larval brain cell body glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: cell body rind of larval brain
subclass of: embryonic/larval cell body glial cell
subclass of: Restriction
  on property: part of
  some values from: cell body rind of larval brain
definition: Glial cell located amongst neuronal cell bodies in the cortex of the embryonic/larval brain.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-06-15T14:20:49Z
database_cross_reference: VFB:FBbt_00049604
has exact synonym: embryonic/larval brain cortex glial cell
has exact synonym: larval brain CBG
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049604

Axiom
annotated source: larval brain cell body glial cell
annotated property: definition
annotated target: Glial cell located amongst neuronal cell bodies in the cortex of the embryonic/larval brain.
database_cross_reference: FlyBase:FBrf0237238

larval VNC cell body glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: cell body rind of larval ventral nerve cord
subclass of: embryonic/larval cell body glial cell
subclass of: Restriction
  on property: part of
  some values from: cell body rind of larval ventral nerve cord
definition: Glial cell located amongst neuronal cell bodies in the cortex of the embryonic/larval ventral nerve cord (VNC). In the early larva, there are around 4 cell body glia per hemineuromere (Ito et al., 1995), but they increase in number during later larval stages, particularly in thoracic and anterior abdominal segments (Coutinho-Budd et al., 2017). The nuclei and cell bodies of the VNC cell body glial cells have quite irregular shapes, and cytoplasmic protrusions fill the space between neighboring neuronal cell bodies (Ito et al., 1995), with no morphological stereotypy by VNC region (Coutinho-Budd et al., 2017). These cells are not found in the dorsal portion of the cell body rind, with neuronal somas instead being wrapped by ensheathing glia (Pogodalla et al., 2021).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-06-15T14:22:51Z
database_cross_reference: VFB:FBbt_00049605
has exact synonym: embryonic/larval VNC cortex glial cell
has exact synonym: larval ventral nerve cord CBG
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049605

Axiom
annotated source: larval VNC cell body glial cell
annotated property: definition
annotated target: Glial cell located amongst neuronal cell bodies in the cortex of the embryonic/larval ventral nerve cord (VNC). In the early larva, there are around 4 cell body glia per hemineuromere (Ito et al., 1995), but they increase in number during later larval stages, particularly in thoracic and anterior abdominal segments (Coutinho-Budd et al., 2017). The nuclei and cell bodies of the VNC cell body glial cells have quite irregular shapes, and cytoplasmic protrusions fill the space between neighboring neuronal cell bodies (Ito et al., 1995), with no morphological stereotypy by VNC region (Coutinho-Budd et al., 2017). These cells are not found in the dorsal portion of the cell body rind, with neuronal somas instead being wrapped by ensheathing glia (Pogodalla et al., 2021).
database_cross_reference: FlyBase:FBrf0082171
database_cross_reference: FlyBase:FBrf0237238
database_cross_reference: FlyBase:FBrf0251788

larval retrocerebral complex
type: Class
subclass of: retrocerebral complex
subclass of: Restriction
  on property: part of
  some values from: larval ring gland
definition: The endocrine complex which consists of the larval corpus cardiacum and corpus allatum.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-02-10T16:49:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049635
comment: More often referred to in combination with the prothoracic gland as the 'ring gland'. The term 'retrocerebral complex' is more often used for adult anatomy.

Axiom
annotated source: larval retrocerebral complex
annotated property: definition
annotated target: The endocrine complex which consists of the larval corpus cardiacum and corpus allatum.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

nervus corporis cardiaci
type: Class
subclass of: nerve
subclass of: Restriction
  on property: innervates
  some values from: brain
subclass of: Restriction
  on property: continuous with
  some values from: corpus cardiacum
definition: Nerve that connects the corpus cardiacum to the brain (de Velasco et al., 2004; Dirksen et al., 2008; Mahishi and Huetteroth, 2019). These nerves contain the axons of neurosecretory cells of the central nervous system projecting to the ring gland and aorta (Hartenstein, 2006; de Velasco et al., 2007; Dirksen et al., 2008; Huckesfeld et al., 2021).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-02-11T13:18:08Z
database_cross_reference: VFB:FBbt_00049645
has exact synonym: NCC
has exact synonym: nerve of the corpus cardiacum
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049645

Axiom
annotated source: nervus corporis cardiaci
annotated property: definition
annotated target: Nerve that connects the corpus cardiacum to the brain (de Velasco et al., 2004; Dirksen et al., 2008; Mahishi and Huetteroth, 2019). These nerves contain the axons of neurosecretory cells of the central nervous system projecting to the ring gland and aorta (Hartenstein, 2006; de Velasco et al., 2007; Dirksen et al., 2008; Huckesfeld et al., 2021).
database_cross_reference: FlyBase:FBrf0179777
database_cross_reference: FlyBase:FBrf0193772
database_cross_reference: FlyBase:FBrf0194938
database_cross_reference: FlyBase:FBrf0204742
database_cross_reference: FlyBase:FBrf0224194
database_cross_reference: FlyBase:FBrf0244208
database_cross_reference: FlyBase:FBrf0249161

Axiom
annotated source: nervus corporis cardiaci
annotated property: hasExactSynonym
annotated target: NCC
database_cross_reference: FlyBase:FBrf0179777

Axiom
annotated source: nervus corporis cardiaci
annotated property: hasExactSynonym
annotated target: nerve of the corpus cardiacum
database_cross_reference: FlyBase:FBrf0179777

cell body rind of adult subesophageal zone
type: Class
subclass of: cell body rind region
subclass of: Restriction
  on property: part of
  some values from: adult brain cell body rind
subclass of: Restriction
  on property: part of
  some values from: adult subesophageal zone
definition: Region of the adult brain cell body rind that overlies the neuropil found in the subesophageal zone.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-08-19T12:11:15Z
database_cross_reference: VFB:FBbt_00049781
has exact synonym: cell body rind around the SEZ
has exact synonym: cortex of adult subesophageal zone
has exact synonym: rSEZ
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049781

Axiom
annotated source: cell body rind of adult subesophageal zone
annotated property: definition
annotated target: Region of the adult brain cell body rind that overlies the neuropil found in the subesophageal zone.
database_cross_reference: FlyBase:FBrf0224194

Axiom
annotated source: cell body rind of adult subesophageal zone
annotated property: hasExactSynonym
annotated target: cell body rind around the SEZ
database_cross_reference: FlyBase:FBrf0224194

Axiom
annotated source: cell body rind of adult subesophageal zone
annotated property: hasExactSynonym
annotated target: rSEZ
database_cross_reference: FlyBase:FBrf0224194
has synonym type: BRAIN NAME ABV

adult fat cell
type: Class
equivalent class: Class
  intersection of: fat cell
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: fat cell
subclass of: Restriction
  on property: part of
  some values from: adult fat body
definition: Fat cell of the adult fat body. These cells are derived from cells of the larval body wall and adepithelial cells associated with imaginal discs (Hoshizaki et al., 1995; Musselman and Kuhnlein, 2018). Fully-differentiated adult fat cells are found from around 3-4 days after eclosion (Aguila et al., 2007). Unlike the larval fat cells, they are diploid (Musselman and Kuhnlein, 2018).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-12-08T10:32:24Z
has exact synonym: adult adipose cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049949

Axiom
annotated source: adult fat cell
annotated property: definition
annotated target: Fat cell of the adult fat body. These cells are derived from cells of the larval body wall and adepithelial cells associated with imaginal discs (Hoshizaki et al., 1995; Musselman and Kuhnlein, 2018). Fully-differentiated adult fat cells are found from around 3-4 days after eclosion (Aguila et al., 2007). Unlike the larval fat cells, they are diploid (Musselman and Kuhnlein, 2018).
database_cross_reference: FlyBase:FBrf0083200
database_cross_reference: FlyBase:FBrf0191901
database_cross_reference: FlyBase:FBrf0238315

larval fat cell
type: Class
subclass of: fat cell
subclass of: Restriction
  on property: develops from
  some values from: precursor fat cell
definition: Fat cell that, during larval development, is flat, polygonal and tightly associated with other fat cells in the larval fat body (Nelliot et al., 2006). They accumulate nutrient reserves to act as a reservoir to support the animal through the non-feeding period of development (Aguila et al., 2007). Unlike the adult fat cells, they are endoreplicative (Musselman and Kuhnlein, 2018). After pupation, the larval fat cells adopt a more rounded shape and detach from each other in an anterior to posterior wave, leaving free-floating larval fat cells (Nelliot et al., 2006). The dissociated larval fat cells persist into the newly-eclosed adult to provide a food source (Aguila et al., 2007).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-12-08T11:09:08Z
has exact synonym: larval adipose cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049950

Axiom
annotated source: larval fat cell
annotated property: definition
annotated target: Fat cell that, during larval development, is flat, polygonal and tightly associated with other fat cells in the larval fat body (Nelliot et al., 2006). They accumulate nutrient reserves to act as a reservoir to support the animal through the non-feeding period of development (Aguila et al., 2007). Unlike the adult fat cells, they are endoreplicative (Musselman and Kuhnlein, 2018). After pupation, the larval fat cells adopt a more rounded shape and detach from each other in an anterior to posterior wave, leaving free-floating larval fat cells (Nelliot et al., 2006). The dissociated larval fat cells persist into the newly-eclosed adult to provide a food source (Aguila et al., 2007).
database_cross_reference: FlyBase:FBrf0191901
database_cross_reference: FlyBase:FBrf0193562
database_cross_reference: FlyBase:FBrf0238315

larval fat cell of larval fat body
type: Class
equivalent class: Class
  intersection of: fat cell
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: larval fat cell
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval fat body
definition: Fat cell of the late embryo, larva or early pupa that is part of the mature larval fat body. These cells are flat, polygonal and tightly associated with one another in single-layer sheets (Nelliot et al., 2006). They accumulate nutrient reserves to act as a reservoir to support the animal through the non-feeding period of development (Aguila et al., 2007). There are approximately 2200 of these cells (Butterworth et al., 1988).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-12-08T12:28:26Z
has exact synonym: embryonic/larval fat cell of fat body
has exact synonym: larval adipose cell of larval fat body
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049952

Axiom
annotated source: larval fat cell of larval fat body
annotated property: definition
annotated target: Fat cell of the late embryo, larva or early pupa that is part of the mature larval fat body. These cells are flat, polygonal and tightly associated with one another in single-layer sheets (Nelliot et al., 2006). They accumulate nutrient reserves to act as a reservoir to support the animal through the non-feeding period of development (Aguila et al., 2007). There are approximately 2200 of these cells (Butterworth et al., 1988).
database_cross_reference: FlyBase:FBrf0049074
database_cross_reference: FlyBase:FBrf0191901
database_cross_reference: FlyBase:FBrf0193562

precursor fat cell
type: Class
subclass of: developing embryonic structure
subclass of: somatic precursor cell
subclass of: Restriction
  on property: expresses
  some values from: FBgn0003507
definition: Precursor cell of the embryo that will develop into a larval fat cell. These can first be detected around stage 10 in segmentally-repeated clusters (primary clusters) in the eve-expressing domain of parasegments (PS) 4-9 and PS13, just ventral to the midgut visceral mesoderm (Riechmann et al., 1998). In PS10-12, gonadal precursors are instead found in this position (Riechmann et al., 1998). In PS13, precursor fat cells are also found in the dorsal mesoderm that would be occupied by heart and midgut precursors in other segments (Riechmann et al., 1998). Secondary clusters of precursors arise in two positions, directly posterior to, and ventral and anterior to, the primary cluster (or gonadal precursors) in PS4-13 (Riechmann et al., 1998). At the onset of germ band retraction, these cells begin to divide and form a continuous layer between the midgut visceral mesoderm and the somatic mesoderm, losing their segmental appearance (Riechmann et al., 1998). These cells do not accumulate lipids (Campos-Ortega and Hartenstein, 1997).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2020-12-08T12:35:51Z
has exact synonym: developing fat-body cell
has exact synonym: embryonic adipose cell
has exact synonym: embryonic fat cell
has exact synonym: progenitor fat cell
has exact synonym: progenitor fat-body cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00049953
comment: Earliest marker is srp (Sam et al., 1996).

Axiom
annotated source: precursor fat cell
annotated property: definition
annotated target: Precursor cell of the embryo that will develop into a larval fat cell. These can first be detected around stage 10 in segmentally-repeated clusters (primary clusters) in the eve-expressing domain of parasegments (PS) 4-9 and PS13, just ventral to the midgut visceral mesoderm (Riechmann et al., 1998). In PS10-12, gonadal precursors are instead found in this position (Riechmann et al., 1998). In PS13, precursor fat cells are also found in the dorsal mesoderm that would be occupied by heart and midgut precursors in other segments (Riechmann et al., 1998). Secondary clusters of precursors arise in two positions, directly posterior to, and ventral and anterior to, the primary cluster (or gonadal precursors) in PS4-13 (Riechmann et al., 1998). At the onset of germ band retraction, these cells begin to divide and form a continuous layer between the midgut visceral mesoderm and the somatic mesoderm, losing their segmental appearance (Riechmann et al., 1998). These cells do not accumulate lipids (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0092674
database_cross_reference: FlyBase:FBrf0101991

Axiom
annotated source: precursor fat cell
annotated property: hasExactSynonym
annotated target: developing fat-body cell
database_cross_reference: FlyBase:FBrf0092674

Axiom
annotated source: precursor fat cell
annotated property: hasExactSynonym
annotated target: progenitor fat cell
database_cross_reference: FlyBase:FBrf0092674

Axiom
annotated source: precursor fat cell
annotated property: hasExactSynonym
annotated target: progenitor fat-body cell
database_cross_reference: FlyBase:FBrf0092674

larval subesophageal zone
type: Class
equivalent class: Class
  intersection of: subesophageal zone
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: subesophageal zone
subclass of: Restriction
  on property: part of
  some values from: larval central nervous system
definition: Neuropil mass below the larval esophagus consisting of the gnathal ganglion and part of the tritocerebrum.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-02-26T11:25:02Z
database_cross_reference: VFB:FBbt_00051067
has exact synonym: larval SEZ
has OBO namespace: fly_anatomy.ontology
has related synonym: larval subesophageal ganglion
id: FBbt:00051067
comment: This is analogous to the adult term based on Ito et al. (2014), reflecting location relative to the esophagus, rather than segmental identity.

Axiom
annotated source: larval subesophageal zone
annotated property: definition
annotated target: Neuropil mass below the larval esophagus consisting of the gnathal ganglion and part of the tritocerebrum.
database_cross_reference: FlyBase:FBrf0224194
database_cross_reference: FlyBase:FBrf0229672
database_cross_reference: FlyBase:FBrf0237252

Axiom
annotated source: larval subesophageal zone
annotated property: hasExactSynonym
annotated target: larval SEZ
database_cross_reference: FlyBase:FBrf0237252

subesophageal zone
type: Class
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: central nervous system
definition: Neuropil mass below the esophagus encompassing the three gnathal neuromeres and any regions of the cephalic (supraesophageal) neuromeres situated below the esophagus (Ito et al., 2014).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-02-26T11:59:59Z
database_cross_reference: VFB:FBbt_00051068
has exact synonym: SEZ
has OBO namespace: fly_anatomy.ontology
has related synonym: subesophageal ganglion
id: FBbt:00051068

Axiom
annotated source: subesophageal zone
annotated property: definition
annotated target: Neuropil mass below the esophagus encompassing the three gnathal neuromeres and any regions of the cephalic (supraesophageal) neuromeres situated below the esophagus (Ito et al., 2014).
database_cross_reference: FlyBase:FBrf0224194

Axiom
annotated source: subesophageal zone
annotated property: hasExactSynonym
annotated target: SEZ
database_cross_reference: FlyBase:FBrf0224194

embryonic/larval PNS subperineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: larval peripheral nervous system
  intersection of: Restriction
    on property: part of
    some values from: subperineurial glial sheath
subclass of: embryonic/larval lateral glial cell
subclass of: embryonic/larval subperineurial glial cell
subclass of: PNS subperineurial glial cell
subclass of: larval PNS glial cell
definition: Subperineurial glial cell of the embryonic/larval peripheral nervous system. These cells form a layer around the peripheral nerves, below the layer formed by the perineurial glial cells (Freeman, 2015).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-03-15T14:08:07Z
database_cross_reference: VFB:FBbt_00051073
has exact synonym: larval SPG-based BBB of PNS
has exact synonym: larval peripheral SPG
has exact synonym: larval peripheral nervous system subperineurial glial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00051073

Axiom
annotated source: embryonic/larval PNS subperineurial glial cell
annotated property: definition
annotated target: Subperineurial glial cell of the embryonic/larval peripheral nervous system. These cells form a layer around the peripheral nerves, below the layer formed by the perineurial glial cells (Freeman, 2015).
database_cross_reference: FlyBase:FBrf0229998

sexually-dimorphic neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has characteristic
    some values from: PATO_0002451
subclass of: neuron
subclass of: Restriction
  on property: has characteristic
  some values from: PATO_0002451
definition: Any neuron (FBbt:00005106) that has characteristic some sexually dimorphic (PATO:0002451).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-04-01T12:50:00Z
database_cross_reference: VFB:FBbt_00051203
has OBO namespace: fly_anatomy.ontology
id: FBbt:00051203

Axiom
annotated source: sexually-dimorphic neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that has characteristic some sexually dimorphic (PATO:0002451).
database_cross_reference: FBC:Autogenerated

larval descending neuron to SEZ
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: cell body rind of larval brain
  intersection of: Restriction
    on property: has synaptic IO in region
    some values from: larval subesophageal zone
subclass of: larval descending neuron
subclass of: Restriction
  on property: has synaptic IO in region
  some values from: larval subesophageal zone
definition: Descending neuron of the larva with its soma in the brain and processes extending into the subesophageal zone (Winding et al. (2023).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2023-08-17T13:08:04Z
database_cross_reference: VFB:FBbt_00051301
has exact synonym: larval DNSEZ
has OBO namespace: fly_anatomy.ontology
id: FBbt:00051301
comment: Winding et al. (2023) appear to exclude neurons that continue to the VNC, but these are not excluded from this class.

Axiom
annotated source: larval descending neuron to SEZ
annotated property: definition
annotated target: Descending neuron of the larva with its soma in the brain and processes extending into the subesophageal zone (Winding et al. (2023).
database_cross_reference: FlyBase:FBrf0255988

Axiom
annotated source: larval descending neuron to SEZ
annotated property: hasExactSynonym
annotated target: larval DNSEZ
database_cross_reference: FlyBase:FBrf0255988

larval descending neuron
type: Class
subclass of: supraesophageal ganglion neuron
subclass of: larval CNS neuron
subclass of: Restriction
  on property: has soma location
  some values from: cell body rind of larval brain
definition: Descending neuron of the larva with its soma in the brain and processes extending further into the CNS, reaching the gnathal ganglion or ventral nerve cord (Winding et al. (2023).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2023-08-17T13:13:54Z
database_cross_reference: VFB:FBbt_00051302
has exact synonym: larval DN
has OBO namespace: fly_anatomy.ontology
id: FBbt:00051302
comment: Ignores directionality of information flow, similar to 'adult descending neuron'.

Axiom
annotated source: larval descending neuron
annotated property: definition
annotated target: Descending neuron of the larva with its soma in the brain and processes extending further into the CNS, reaching the gnathal ganglion or ventral nerve cord (Winding et al. (2023).
database_cross_reference: FlyBase:FBrf0255988

larval ascending neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: larval ventral nerve cord
  intersection of: Restriction
    on property: has synaptic IO in region
    some values from: larval brain
subclass of: larval CNS neuron
subclass of: Restriction
  on property: has soma location
  some values from: larval ventral nerve cord
subclass of: Restriction
  on property: has synaptic IO in region
  some values from: larval brain
definition: Ascending neuron of the larva, having its soma in the ventral nerve cord and processes extending into the brain (Winding et al. (2023).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2023-08-17T13:27:11Z
database_cross_reference: VFB:FBbt_00051303
has exact synonym: larval AN
has OBO namespace: fly_anatomy.ontology
id: FBbt:00051303
comment: Ignores directionality of information flow, similar to 'adult ascending neuron'. Excludes neurons that 'ascend' from the gnathal neuromeres.

Axiom
annotated source: larval ascending neuron
annotated property: definition
annotated target: Ascending neuron of the larva, having its soma in the ventral nerve cord and processes extending into the brain (Winding et al. (2023).
database_cross_reference: FlyBase:FBrf0255988

Axiom
annotated source: larval ascending neuron
annotated property: hasExactSynonym
annotated target: larval AN
database_cross_reference: FlyBase:FBrf0255988

segmentally-repeated neuroblast
type: Class
subclass of: neuroblast
subclass of: ectodermal derivative
subclass of: Restriction
  on property: part of
  some values from: central nervous system
subclass of: Restriction
  on property: develops from
  some values from: neurogenic region
definition: Neuroblast that has serial homologues across multiple neuromeres. All neuroblasts of the ventral nerve cord and gnathal ganglia are segmentally-repeated (Urbach et al., 2016). Most neuroblasts of the tritocerebrum and some neuroblasts of the deutocerebrum also have serial homology to neuroblasts of more posterior segments (Urbach et al., 2016).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-06-10T15:10:07Z
database_cross_reference: VFB:FBbt_00051362
has exact synonym: serially-homologous neuroblast
has OBO namespace: fly_anatomy.ontology
id: FBbt:00051362
comment: Applies to neuroblasts at all stages of development.

Axiom
annotated source: segmentally-repeated neuroblast
annotated property: definition
annotated target: Neuroblast that has serial homologues across multiple neuromeres. All neuroblasts of the ventral nerve cord and gnathal ganglia are segmentally-repeated (Urbach et al., 2016). Most neuroblasts of the tritocerebrum and some neuroblasts of the deutocerebrum also have serial homology to neuroblasts of more posterior segments (Urbach et al., 2016).
database_cross_reference: FlyBase:FBrf0232096

Axiom
annotated source: segmentally-repeated neuroblast
annotated property: hasExactSynonym
annotated target: serially-homologous neuroblast
database_cross_reference: FlyBase:FBrf0232096

gnathal neuroblast
type: Class
equivalent class: Class
  intersection of: neuroblast
  intersection of: Restriction
    on property: part of
    some values from: gnathal segment
subclass of: segmentally-repeated neuroblast
subclass of: Restriction
  on property: part of
  some values from: gnathal segment
definition: A neuroblast located in one of the three gnathal segments. These are all homologues of neuroblasts in the thoracic segments (Urbach et al., 2016). The development of neuroblasts in the mandibular segment is significantly delayed compared to more posterior segments (Urbach et al., 2016) and their primary lineages are smaller (Rickert et al., 2018).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-06-11T08:03:23Z
database_cross_reference: VFB:FBbt_00051363
has exact synonym: neuroblast of gnathal ganglion
has exact synonym: neuroblast of gnathal neuromere
has narrow synonym: neuroblast of subesophageal ganglion
has OBO namespace: fly_anatomy.ontology
id: FBbt:00051363

Axiom
annotated source: gnathal neuroblast
annotated property: definition
annotated target: A neuroblast located in one of the three gnathal segments. These are all homologues of neuroblasts in the thoracic segments (Urbach et al., 2016). The development of neuroblasts in the mandibular segment is significantly delayed compared to more posterior segments (Urbach et al., 2016) and their primary lineages are smaller (Rickert et al., 2018).
database_cross_reference: FlyBase:FBrf0232096
database_cross_reference: FlyBase:FBrf0238045

premotor neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: sends synaptic output to cell
    some values from: motor neuron
subclass of: neuron
subclass of: Restriction
  on property: sends synaptic output to cell
  some values from: motor neuron
definition: Any neuron (FBbt:00005106) that sends synaptic output to some motor neuron (FBbt:00005123).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-08-11T10:18:06Z
database_cross_reference: VFB:FBbt_00051436
has OBO namespace: fly_anatomy.ontology
id: FBbt:00051436

Axiom
annotated source: premotor neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that sends synaptic output to some motor neuron (FBbt:00005123).
database_cross_reference: https://orcid.org/0000-0002-1373-1705

adult premotor neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: sends synaptic output to cell
    some values from: adult motor neuron
subclass of: adult neuron
subclass of: premotor neuron
subclass of: Restriction
  on property: sends synaptic output to cell
  some values from: adult motor neuron
definition: Any neuron (FBbt:00005106) that sends synaptic output to some adult motor neuron (FBbt:00048235).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-08-11T10:22:32Z
database_cross_reference: VFB:FBbt_00051437
has OBO namespace: fly_anatomy.ontology
id: FBbt:00051437

Axiom
annotated source: adult premotor neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that sends synaptic output to some adult motor neuron (FBbt:00048235).
database_cross_reference: https://orcid.org/0000-0002-1373-1705

larval premotor neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: sends synaptic output to cell
    some values from: embryonic/larval motor neuron
subclass of: larval neuron
subclass of: premotor neuron
subclass of: Restriction
  on property: sends synaptic output to cell
  some values from: embryonic/larval motor neuron
definition: Any neuron (FBbt:00005106) that sends synaptic output to some embryonic/larval motor neuron (FBbt:00007675).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-08-11T10:22:52Z
database_cross_reference: VFB:FBbt_00051438
has OBO namespace: fly_anatomy.ontology
id: FBbt:00051438

Axiom
annotated source: larval premotor neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that sends synaptic output to some embryonic/larval motor neuron (FBbt:00007675).
database_cross_reference: https://orcid.org/0000-0002-1373-1705

efferent neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: cell body rind of the central nervous system
  intersection of: Restriction
    on property: fasciculates with
    some values from: nerve
subclass of: CNS neuron
subclass of: Restriction
  on property: has soma location
  some values from: cell body rind of the central nervous system
subclass of: Restriction
  on property: fasciculates with
  some values from: nerve
subclass of: Restriction
  on property: receives synaptic input in region
  some values from: central nervous system
definition: Neuron that transmits information out of the central nervous system (CNS). It has its soma in the cell body rind of the CNS, a dendrite in the CNS and an axon projecting through a nerve (Prokop, 2006).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-11-02T13:57:50Z
database_cross_reference: VFB:FBbt_00051963
has OBO namespace: fly_anatomy.ontology
id: FBbt:00051963

Axiom
annotated source: efferent neuron
annotated property: definition
annotated target: Neuron that transmits information out of the central nervous system (CNS). It has its soma in the cell body rind of the CNS, a dendrite in the CNS and an axon projecting through a nerve (Prokop, 2006).
database_cross_reference: FlyBase:FBrf0192553

adult efferent neuron
type: Class
equivalent class: Class
  intersection of: efferent neuron
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: efferent neuron
subclass of: adult CNS neuron
subclass of: Restriction
  on property: has soma location
  some values from: cell body rind of adult central nervous system
subclass of: Restriction
  on property: receives synaptic input in region
  some values from: adult central nervous system
definition: Any efferent neuron of the adult.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-11-02T13:58:18Z
database_cross_reference: VFB:FBbt_00051964
has OBO namespace: fly_anatomy.ontology
id: FBbt:00051964

Axiom
annotated source: adult efferent neuron
annotated property: definition
annotated target: Any efferent neuron of the adult.
database_cross_reference: FBC:Autogenerated

larval efferent neuron
type: Class
equivalent class: Class
  intersection of: efferent neuron
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: efferent neuron
subclass of: larval CNS neuron
subclass of: Restriction
  on property: has soma location
  some values from: cell body rind of larval central nervous system
subclass of: Restriction
  on property: receives synaptic input in region
  some values from: larval central nervous system
definition: Any efferent neuron of the larva.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-11-02T13:58:47Z
database_cross_reference: VFB:FBbt_00051965
has OBO namespace: fly_anatomy.ontology
id: FBbt:00051965

Axiom
annotated source: larval efferent neuron
annotated property: definition
annotated target: Any efferent neuron of the larva.
database_cross_reference: FBC:Autogenerated

larval ring gland projection neuron
type: Class
equivalent class: Class
  intersection of: larval neuron
  intersection of: Restriction
    on property: fasciculates with
    some values from: nervus corporis cardiaci
subclass of: larval peptidergic neuron
subclass of: Restriction
  on property: fasciculates with
  some values from: larval nervus corporis cardiaci
definition: Larval neuron that has its soma in the central nervous system and projects through the nervus corporis cardiaci (Huckesfeld et al., 2021). It releases neuropeptide in the ring gland or aorta via non-synaptic dense core vesicles (Huckesfeld et al., 2021).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-11-11T16:10:22Z
database_cross_reference: VFB:FBbt_00051985
has exact synonym: RPN
has exact synonym: larval RG PN
has exact synonym: larval RGN
has exact synonym: larval ring gland PN
has OBO namespace: fly_anatomy.ontology
id: FBbt:00051985

Axiom
annotated source: larval ring gland projection neuron
annotated property: definition
annotated target: Larval neuron that has its soma in the central nervous system and projects through the nervus corporis cardiaci (Huckesfeld et al., 2021). It releases neuropeptide in the ring gland or aorta via non-synaptic dense core vesicles (Huckesfeld et al., 2021).
database_cross_reference: FlyBase:FBrf0249161

Axiom
annotated source: larval ring gland projection neuron
annotated property: hasExactSynonym
annotated target: RPN
database_cross_reference: FlyBase:FBrf0249161

Axiom
annotated source: larval ring gland projection neuron
annotated property: hasExactSynonym
annotated target: larval RGN
database_cross_reference: FlyBase:FBrf0255988

adult neurosecretory neuron
type: Class
equivalent class: Class
  intersection of: neurosecretory neuron
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: neurosecretory neuron
subclass of: adult neuron
subclass of: Restriction
  on property: part of
  some values from: adult endocrine system
definition: Any neurosecretory neuron of the adult.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-11-23T17:12:03Z
database_cross_reference: VFB:FBbt_00052007
has exact synonym: adult neurosecretory cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052007

Axiom
annotated source: adult neurosecretory neuron
annotated property: definition
annotated target: Any neurosecretory neuron of the adult.
database_cross_reference: FBC:Autogenerated

larval neurosecretory neuron
type: Class
equivalent class: Class
  intersection of: neurosecretory neuron
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: larval neuron
subclass of: neurosecretory neuron
subclass of: Restriction
  on property: part of
  some values from: larval endocrine system
definition: Any neurosecretory neuron of the larva.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-11-23T17:12:58Z
database_cross_reference: VFB:FBbt_00052008
has exact synonym: larval neurosecretory cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052008

Axiom
annotated source: larval neurosecretory neuron
annotated property: definition
annotated target: Any neurosecretory neuron of the larva.
database_cross_reference: FBC:Autogenerated

gnathal ganglion neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: gnathal ganglion
subclass of: subesophageal zone neuron
subclass of: Restriction
  on property: has soma location
  some values from: gnathal ganglion
definition: Any neuron (FBbt:00005106) that has its soma located in some gnathal ganglion (FBbt:00004013).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2021-12-06T15:50:04Z
database_cross_reference: VFB:FBbt_00052032
has exact synonym: GG neuron
has OBO namespace: fly_anatomy.ontology
has related synonym: SEG neuron
has related synonym: SOG neuron
has related synonym: subesophageal ganglion neuron
id: FBbt:00052032

Axiom
annotated source: gnathal ganglion neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that has its soma located in some gnathal ganglion (FBbt:00004013).
database_cross_reference: FBC:Autogenerated

integument of larval thoracic segment
type: Class
equivalent class: Class
  intersection of: segmental subdivision of larval integument
  intersection of: Restriction
    on property: part of
    some values from: thoracic segment
subclass of: segmental subdivision of larval integument
subclass of: Restriction
  on property: part of
  some values from: larval thoracic segment
definition: The integument of a larval thoracic segment.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-02-04T09:59:32Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052111

Axiom
annotated source: integument of larval thoracic segment
annotated property: definition
annotated target: The integument of a larval thoracic segment.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

larval ventral sensory cluster
type: Class
subclass of: sensory cluster
subclass of: Restriction
  on property: part of
  some values from: larval ventral sensory cluster group
subclass of: Restriction
  on property: develops from
  some values from: embryonic ventral sensory organ precursor cluster
definition: Ventralmost cluster of sense organs and sensory neuron somas, located ventrally within the larval ventral sensory cluster group (Bodmer and Jan, 1987; Orgogozo and Grueber, 2005). Axons of neurons in this cluster in abdominal segments follow branch SNc of the segmental nerve (Willams and Shepherd, 1999).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-02-15T14:29:44Z
has exact synonym: larval sensory cluster v
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052115

Axiom
annotated source: larval ventral sensory cluster
annotated property: definition
annotated target: Ventralmost cluster of sense organs and sensory neuron somas, located ventrally within the larval ventral sensory cluster group (Bodmer and Jan, 1987; Orgogozo and Grueber, 2005). Axons of neurons in this cluster in abdominal segments follow branch SNc of the segmental nerve (Willams and Shepherd, 1999).
database_cross_reference: FlyBase:FBrf0047289
database_cross_reference: FlyBase:FBrf0108300
database_cross_reference: FlyBase:FBrf0183734

larval thoracic ventral sensory cluster
type: Class
equivalent class: Class
  intersection of: larval ventral sensory cluster
  intersection of: Restriction
    on property: part of
    some values from: thoracic segment
subclass of: larval ventral sensory cluster
subclass of: Restriction
  on property: part of
  some values from: larval thoracic ventral sensory cluster group
subclass of: Restriction
  on property: overlaps
  some values from: integument of larval thoracic segment
subclass of: Restriction
  on property: develops from
  some values from: embryonic thoracic ventral sensory organ precursor cluster
definition: Any larval ventral sensory cluster (FBbt:00052115) that is part of some thoracic segment (FBbt:00000016).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-02-15T14:45:58Z
has exact synonym: larval T1-3 ventral sensory cluster
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052117

Axiom
annotated source: larval thoracic ventral sensory cluster
annotated property: definition
annotated target: Any larval ventral sensory cluster (FBbt:00052115) that is part of some thoracic segment (FBbt:00000016).
database_cross_reference: FBC:Autogenerated

larval prothoracic ventral sensory cluster
type: Class
equivalent class: Class
  intersection of: larval ventral sensory cluster
  intersection of: Restriction
    on property: part of
    some values from: prothoracic segment
subclass of: larval thoracic ventral sensory cluster
subclass of: Restriction
  on property: part of
  some values from: larval prothoracic ventral sensory cluster group
subclass of: Restriction
  on property: overlaps
  some values from: integument of larval prothoracic segment
definition: Any larval ventral sensory cluster (FBbt:00052115) that is part of some prothoracic segment (FBbt:00000017).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-02-15T14:53:10Z
has exact synonym: larval T1 ventral sensory cluster
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052118

Axiom
annotated source: larval prothoracic ventral sensory cluster
annotated property: definition
annotated target: Any larval ventral sensory cluster (FBbt:00052115) that is part of some prothoracic segment (FBbt:00000017).
database_cross_reference: FBC:Autogenerated

larval mesothoracic ventral sensory cluster
type: Class
equivalent class: Class
  intersection of: larval ventral sensory cluster
  intersection of: Restriction
    on property: part of
    some values from: mesothoracic segment
subclass of: larval thoracic ventral sensory cluster
subclass of: Restriction
  on property: part of
  some values from: larval mesothoracic ventral sensory cluster group
subclass of: Restriction
  on property: overlaps
  some values from: integument of larval mesothoracic segment
definition: Any larval ventral sensory cluster (FBbt:00052115) that is part of some mesothoracic segment (FBbt:00000018).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-02-15T14:54:46Z
has exact synonym: larval T2 ventral sensory cluster
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052119

Axiom
annotated source: larval mesothoracic ventral sensory cluster
annotated property: definition
annotated target: Any larval ventral sensory cluster (FBbt:00052115) that is part of some mesothoracic segment (FBbt:00000018).
database_cross_reference: FBC:Autogenerated

larval ventral sensory cluster of A1-7
type: Class
equivalent class: Class
  intersection of: larval ventral sensory cluster
  intersection of: Restriction
    on property: part of
    some values from: anterior abdominal segment
subclass of: larval ventral sensory cluster
subclass of: Restriction
  on property: part of
  some values from: larval ventral sensory cluster group of A1-7
subclass of: Restriction
  on property: overlaps
  some values from: integument of larval segment A1-7
subclass of: Restriction
  on property: develops from
  some values from: embryonic abdominal ventral sensory organ precursor cluster
definition: Any larval ventral sensory cluster (FBbt:00052115) that is part of some anterior abdominal segment (FBbt:00052393).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-02-15T14:56:26Z
has exact synonym: larval abdominal ventral sensory cluster
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052121

Axiom
annotated source: larval ventral sensory cluster of A1-7
annotated property: definition
annotated target: Any larval ventral sensory cluster (FBbt:00052115) that is part of some anterior abdominal segment (FBbt:00052393).
database_cross_reference: FBC:Autogenerated

gut-innervating neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: overlaps
    some values from: gut
subclass of: neuron
subclass of: Restriction
  on property: overlaps
  some values from: gut
definition: Neuron that innervates any part of the gut. These cells include sensory neurons, as well as efferent neurons that terminate on the visceral muscles and the underlying epithelium (Lemaitre and Miguel-Aliaga, 2013). They are chemically and neuroanatomically diverse, with efferent neurons collectively producing several neuropeptides and serotonin (Lemaitre and Miguel-Aliaga, 2013).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-03-24T13:50:11Z
database_cross_reference: VFB:FBbt_00052149
has narrow synonym: enteric neuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052149
comment: Many recent papers do not count the pharyngeal and labral taste neurons as 'enteric neurons', hence only a narrow synonym.

Axiom
annotated source: gut-innervating neuron
annotated property: definition
annotated target: Neuron that innervates any part of the gut. These cells include sensory neurons, as well as efferent neurons that terminate on the visceral muscles and the underlying epithelium (Lemaitre and Miguel-Aliaga, 2013). They are chemically and neuroanatomically diverse, with efferent neurons collectively producing several neuropeptides and serotonin (Lemaitre and Miguel-Aliaga, 2013).
database_cross_reference: FlyBase:FBrf0223413

adult gut-innervating neuron
type: Class
equivalent class: Class
  intersection of: gut-innervating neuron
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: adult neuron
subclass of: gut-innervating neuron
subclass of: Restriction
  on property: overlaps
  some values from: adult gut
definition: Any gut-innervating neuron of the adult.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-03-24T14:13:41Z
database_cross_reference: VFB:FBbt_00052150
has narrow synonym: adult enteric neuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052150
comment: Many recent papers do not count the pharyngeal and labral taste neurons as 'enteric neurons', hence only a narrow synonym.

Axiom
annotated source: adult gut-innervating neuron
annotated property: definition
annotated target: Any gut-innervating neuron of the adult.
database_cross_reference: FlyBase:FBrf0223413

larval gut-innervating neuron
type: Class
equivalent class: Class
  intersection of: gut-innervating neuron
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: larval neuron
subclass of: gut-innervating neuron
subclass of: Restriction
  on property: overlaps
  some values from: embryonic/larval gut
definition: Any gut-innervating neuron of the larva.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-03-24T14:16:12Z
database_cross_reference: VFB:FBbt_00052151
has narrow synonym: larval enteric neuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052151

Axiom
annotated source: larval gut-innervating neuron
annotated property: definition
annotated target: Any gut-innervating neuron of the larva.
database_cross_reference: FlyBase:FBrf0223413

larval surface glial cell
type: Class
equivalent class: Class
  intersection of: surface glial cell
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: larval glial cell
subclass of: surface glial cell
definition: Any surface glial cell of the larva.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-11-02T08:03:24Z
database_cross_reference: VFB:FBbt_00052386
has exact synonym: larval surface associated glial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052386

Axiom
annotated source: larval surface glial cell
annotated property: definition
annotated target: Any surface glial cell of the larva.
database_cross_reference: FlyBase:FBrf0082171

adult surface glial cell
type: Class
equivalent class: Class
  intersection of: surface glial cell
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: surface glial cell
subclass of: adult glial cell
definition: Any surface glial cell of the adult.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-11-02T08:04:59Z
database_cross_reference: VFB:FBbt_00052387
has exact synonym: larval surface associated glial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052387

Axiom
annotated source: adult surface glial cell
annotated property: definition
annotated target: Any surface glial cell of the adult.
database_cross_reference: FlyBase:FBrf0234767

terminal segment
type: Class
subclass of: abdominal segment
definition: One of abdominal segments 8-11 (Campos-Ortega and Hartenstein, 1997; Birkholz et al., 2013). These segments have different patterns of neuroblasts, neurons, musculature and sense organs to more anterior abdominal segments (Campos-Ortega and Hartenstein, 1997; Birkholz et al., 2013).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-11-03T13:09:13Z
has exact synonym: posterior abdominal segment
has exact synonym: tail region
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052388

Axiom
annotated source: terminal segment
annotated property: definition
annotated target: One of abdominal segments 8-11 (Campos-Ortega and Hartenstein, 1997; Birkholz et al., 2013). These segments have different patterns of neuroblasts, neurons, musculature and sense organs to more anterior abdominal segments (Campos-Ortega and Hartenstein, 1997; Birkholz et al., 2013).
database_cross_reference: FlyBase:FBrf0041814
database_cross_reference: FlyBase:FBrf0221210

Axiom
annotated source: terminal segment
annotated property: hasExactSynonym
annotated target: tail region
database_cross_reference: FlyBase:FBrf0041814
database_cross_reference: FlyBase:FBrf0221210

larval terminal segment
type: Class
equivalent class: Class
  intersection of: terminal segment
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: larval abdominal segment
subclass of: terminal segment
definition: Any terminal segment of the larva.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-11-03T13:18:04Z
has exact synonym: larval posterior abdominal segment
has exact synonym: larval tail region
has exact synonym: tail region of larva
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052389

Axiom
annotated source: larval terminal segment
annotated property: definition
annotated target: Any terminal segment of the larva.
database_cross_reference: FlyBase:FBrf0041814
database_cross_reference: FlyBase:FBrf0221210

Axiom
annotated source: larval terminal segment
annotated property: hasExactSynonym
annotated target: larval tail region
database_cross_reference: FlyBase:FBrf0041814

embryonic terminal segment
type: Class
equivalent class: Class
  intersection of: terminal segment
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: embryonic abdominal segment
subclass of: terminal segment
definition: Any terminal segment of the embryo.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-11-03T13:19:14Z
has exact synonym: embryonic posterior abdominal segment
has exact synonym: embryonic tail region
has exact synonym: tail region of embryo
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052390

Axiom
annotated source: embryonic terminal segment
annotated property: definition
annotated target: Any terminal segment of the embryo.
database_cross_reference: FlyBase:FBrf0041814
database_cross_reference: FlyBase:FBrf0221210

Axiom
annotated source: embryonic terminal segment
annotated property: hasExactSynonym
annotated target: tail region of embryo
database_cross_reference: FlyBase:FBrf0041814

adult terminal segment
type: Class
equivalent class: Class
  intersection of: terminal segment
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: adult abdominal segment
subclass of: terminal segment
definition: Terminal segment of the adult. These segments collectively contain the genitalia and analia (Rice et al., 2019; McQueen et al., 2022).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-11-03T13:21:04Z
has exact synonym: adult posterior abdominal segment
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052391

Axiom
annotated source: adult terminal segment
annotated property: definition
annotated target: Terminal segment of the adult. These segments collectively contain the genitalia and analia (Rice et al., 2019; McQueen et al., 2022).
database_cross_reference: FlyBase:FBrf0244105
database_cross_reference: FlyBase:FBrf0253444

terminal neuroblast
type: Class
equivalent class: Class
  intersection of: neuroblast
  intersection of: Restriction
    on property: part of
    some values from: terminal segment
subclass of: abdominal neuroblast
subclass of: Restriction
  on property: part of
  some values from: terminal segment
definition: Any neuroblast (FBbt:00005146) that is part of some terminal segment (FBbt:00052388).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-11-03T13:28:26Z
database_cross_reference: VFB:FBbt_00052392
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052392

Axiom
annotated source: terminal neuroblast
annotated property: definition
annotated target: Any neuroblast (FBbt:00005146) that is part of some terminal segment (FBbt:00052388).
database_cross_reference: FlyBase:FBrf0221210

anterior abdominal segment
type: Class
subclass of: abdominal segment
definition: One of abdominal segments 1-7 (Campos-Ortega and Hartenstein, 1997; Birkholz et al., 2013). These segments have a relatively consistent pattern of neuroblasts, neurons, musculature and sense organs from one segment to the next (Campos-Ortega and Hartenstein, 1997; Birkholz et al., 2013).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-11-03T13:34:40Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052393

Axiom
annotated source: anterior abdominal segment
annotated property: definition
annotated target: One of abdominal segments 1-7 (Campos-Ortega and Hartenstein, 1997; Birkholz et al., 2013). These segments have a relatively consistent pattern of neuroblasts, neurons, musculature and sense organs from one segment to the next (Campos-Ortega and Hartenstein, 1997; Birkholz et al., 2013).
database_cross_reference: FlyBase:FBrf0041814
database_cross_reference: FlyBase:FBrf0221210

embryonic anterior abdominal segment
type: Class
equivalent class: Class
  intersection of: anterior abdominal segment
  intersection of: Restriction
    on property: overlaps
    some values from: embryo
subclass of: embryonic abdominal segment
subclass of: anterior abdominal segment
definition: Any anterior abdominal segment of the embryo.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-11-03T13:37:15Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052394

Axiom
annotated source: embryonic anterior abdominal segment
annotated property: definition
annotated target: Any anterior abdominal segment of the embryo.
database_cross_reference: FlyBase:FBrf0041814
database_cross_reference: FlyBase:FBrf0221210

adult anterior abdominal segment
type: Class
equivalent class: Class
  intersection of: anterior abdominal segment
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: adult abdominal segment
subclass of: anterior abdominal segment
definition: Any anterior abdominal segment of the adult.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-11-03T13:41:55Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052395

Axiom
annotated source: adult anterior abdominal segment
annotated property: definition
annotated target: Any anterior abdominal segment of the adult.
database_cross_reference: FBC:Autogenerated

anterior abdominal neuroblast
type: Class
equivalent class: Class
  intersection of: neuroblast
  intersection of: Restriction
    on property: part of
    some values from: anterior abdominal segment
subclass of: abdominal neuroblast
subclass of: Restriction
  on property: part of
  some values from: anterior abdominal segment
definition: Neuroblast found in one of abdominal segments 1-7. The pattern of neuroblasts is the same in each of these segments in the embryo (Birkholz et al., 2013; Urbach et al., 2016; Rickert et al., 2018).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-11-03T13:46:50Z
database_cross_reference: VFB:FBbt_00052396
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052396

Axiom
annotated source: anterior abdominal neuroblast
annotated property: definition
annotated target: Neuroblast found in one of abdominal segments 1-7. The pattern of neuroblasts is the same in each of these segments in the embryo (Birkholz et al., 2013; Urbach et al., 2016; Rickert et al., 2018).
database_cross_reference: FlyBase:FBrf0221210
database_cross_reference: FlyBase:FBrf0232096
database_cross_reference: FlyBase:FBrf0238045

primary motor neuron
type: Class
equivalent class: Class
  intersection of: motor neuron
  intersection of: primary neuron
subclass of: motor neuron
subclass of: primary neuron
definition: Any motor neuron that is born during the embryonic stage. It may persist into the adult stage, usually with some remodelling (Banerjee et al., 2016).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2022-11-15T10:56:18Z
database_cross_reference: VFB:FBbt_00052518
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052518

Axiom
annotated source: primary motor neuron
annotated property: definition
annotated target: Any motor neuron that is born during the embryonic stage. It may persist into the adult stage, usually with some remodelling (Banerjee et al., 2016).
database_cross_reference: FlyBase:FBrf0234013

peripheral sensory precursor cell
type: Class
subclass of: somatic precursor cell
definition: Precursor cell that can give rise to one or more sensory neurons and/or support cells of the periphery.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2023-01-24T15:23:51Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052556

Axiom
annotated source: peripheral sensory precursor cell
annotated property: definition
annotated target: Precursor cell that can give rise to one or more sensory neurons and/or support cells of the periphery.
database_cross_reference: FlyBase:FBrf0055951
database_cross_reference: FlyBase:FBrf0083795
database_cross_reference: FlyBase:FBrf0132424

segmental subdivision of larval integument
type: Class
equivalent class: Class
  intersection of: segmental subdivision of integument
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: segmental subdivision of integument
subclass of: Restriction
  on property: part of
  some values from: larval integumentary system
definition: Any segmental subdivision of integument of the larva.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2024-01-16T12:05:50Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052722

Axiom
annotated source: segmental subdivision of larval integument
annotated property: definition
annotated target: Any segmental subdivision of integument of the larva.
database_cross_reference: FBC:Autogenerated

segmental subdivision of adult integument
type: Class
equivalent class: Class
  intersection of: segmental subdivision of integument
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: segmental subdivision of integument
subclass of: Restriction
  on property: part of
  some values from: adult integumentary system
definition: Any segmental subdivision of integument of the adult.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2024-01-16T12:06:43Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052723

Axiom
annotated source: segmental subdivision of adult integument
annotated property: definition
annotated target: Any segmental subdivision of integument of the adult.
database_cross_reference: FBC:Autogenerated

adult neurosecretory cell of subesophageal zone
type: Class
equivalent class: Class
  intersection of: adult neurosecretory neuron
  intersection of: Restriction
    on property: has soma location
    some values from: subesophageal zone
subclass of: subesophageal zone neuron
subclass of: neurosecretory cell of adult brain
subclass of: Restriction
  on property: has soma location
  some values from: adult subesophageal zone
definition: Neurosecretory neuron of the adult with a cell body in the subesophageal zone.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2024-01-24T09:14:27Z
database_cross_reference: VFB:FBbt_00052759
has exact synonym: adult SEZ-NSC
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052759

Axiom
annotated source: adult neurosecretory cell of subesophageal zone
annotated property: definition
annotated target: Neurosecretory neuron of the adult with a cell body in the subesophageal zone.
database_cross_reference: doi:10.7554/eLife.102684.1

Axiom
annotated source: adult neurosecretory cell of subesophageal zone
annotated property: hasExactSynonym
annotated target: adult SEZ-NSC
database_cross_reference: doi:10.7554/eLife.102684.1

neurosecretory cell of brain
type: Class
equivalent class: Class
  intersection of: neurosecretory neuron
  intersection of: Restriction
    on property: has soma location
    some values from: brain
subclass of: neurosecretory neuron
subclass of: CNS neuron
subclass of: Restriction
  on property: has soma location
  some values from: brain
definition: Any neurosecretory neuron (FBbt:00005130) that has its soma located in some brain (FBbt:00005095).
contributor: https://orcid.org/0000-0002-1373-1705
date: 2024-01-24T09:24:36Z
database_cross_reference: VFB:FBbt_00052760
has exact synonym: brain NSC
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052760

Axiom
annotated source: neurosecretory cell of brain
annotated property: definition
annotated target: Any neurosecretory neuron (FBbt:00005130) that has its soma located in some brain (FBbt:00005095).
database_cross_reference: doi:10.7554/eLife.102684.1

Axiom
annotated source: neurosecretory cell of brain
annotated property: hasExactSynonym
annotated target: brain NSC
database_cross_reference: doi:10.7554/eLife.102684.1

neurosecretory cell of adult brain
type: Class
equivalent class: Class
  intersection of: neurosecretory cell of brain
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: adult neurosecretory neuron
subclass of: neurosecretory cell of brain
subclass of: adult CNS neuron
definition: Any neurosecretory cell of brain of the adult.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2024-01-24T09:25:57Z
database_cross_reference: VFB:FBbt_00052761
has exact synonym: adult brain NSC
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052761

Axiom
annotated source: neurosecretory cell of adult brain
annotated property: definition
annotated target: Any neurosecretory cell of brain of the adult.
database_cross_reference: doi:10.1101/2023.09.11.557222

Axiom
annotated source: neurosecretory cell of adult brain
annotated property: hasExactSynonym
annotated target: adult brain NSC
database_cross_reference: doi:10.7554/eLife.102684.1

neurosecretory cell of larval brain
type: Class
equivalent class: Class
  intersection of: neurosecretory cell of brain
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: larval neurosecretory neuron
subclass of: neurosecretory cell of brain
subclass of: larval CNS neuron
definition: Any neurosecretory cell of brain of the larva.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2024-01-24T09:26:47Z
database_cross_reference: VFB:FBbt_00052762
has exact synonym: larval brain NSC
has OBO namespace: fly_anatomy.ontology
id: FBbt:00052762

Axiom
annotated source: neurosecretory cell of larval brain
annotated property: definition
annotated target: Any neurosecretory cell of brain of the larva.
database_cross_reference: doi:10.1101/2023.09.11.557222

Axiom
annotated source: neurosecretory cell of larval brain
annotated property: hasExactSynonym
annotated target: larval brain NSC
database_cross_reference: doi:10.7554/eLife.102684.1

adult nervus corporis cardiaci
type: Class
equivalent class: Class
  intersection of: nervus corporis cardiaci
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: nervus corporis cardiaci
subclass of: Restriction
  on property: part of
  some values from: adult peripheral nervous system
definition: Any nervus corporis cardiaci of the adult.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2025-03-18T15:59:45Z
database_cross_reference: VFB:FBbt_00053390
has OBO namespace: fly_anatomy.ontology
id: FBbt:00053390

Axiom
annotated source: adult nervus corporis cardiaci
annotated property: definition
annotated target: Any nervus corporis cardiaci of the adult.
database_cross_reference: FBC:Autogenerated

larval nervus corporis cardiaci
type: Class
equivalent class: Class
  intersection of: nervus corporis cardiaci
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: nervus corporis cardiaci
subclass of: Restriction
  on property: part of
  some values from: larval peripheral nervous system
definition: Any nervus corporis cardiaci of the larva.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2025-03-18T16:00:17Z
database_cross_reference: VFB:FBbt_00053391
has OBO namespace: fly_anatomy.ontology
id: FBbt:00053391

Axiom
annotated source: larval nervus corporis cardiaci
annotated property: definition
annotated target: Any nervus corporis cardiaci of the larva.
database_cross_reference: FBC:Autogenerated

integument of adult abdominal segment 6
type: Class
equivalent class: Class
  intersection of: segmental subdivision of adult integument
  intersection of: Restriction
    on property: part of
    some values from: abdominal segment 6
subclass of: integument of adult abdominal segment
subclass of: Restriction
  on property: part of
  some values from: adult abdominal segment 6
definition: The entire integument of adult abdominal segment 6.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2025-08-01T11:46:05Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00053554

Axiom
annotated source: integument of adult abdominal segment 6
annotated property: definition
annotated target: The entire integument of adult abdominal segment 6.
database_cross_reference: FlyBase:FBrf0007734

integument of adult abdominal segment
type: Class
equivalent class: Class
  intersection of: segmental subdivision of adult integument
  intersection of: Restriction
    on property: part of
    some values from: abdominal segment
subclass of: segmental subdivision of adult integument
subclass of: Restriction
  on property: part of
  some values from: adult abdominal segment
definition: The entire integument of a single adult abdominal segment.
contributor: https://orcid.org/0000-0002-1373-1705
date: 2025-08-01T12:46:07Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00053555

Axiom
annotated source: integument of adult abdominal segment
annotated property: definition
annotated target: The entire integument of a single adult abdominal segment.
database_cross_reference: FlyBase:FBrf0007734

anterior-posterior subdivision of organism
type: Class
subclass of: organism subdivision
definition: Division of an organism along its anterior-posterior axis.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2008-06-30T04:15:23Z
database_cross_reference: UBERON:0011676
has OBO namespace: fly_anatomy.ontology
id: FBbt:00057001
in subset: larval OF

Axiom
annotated source: anterior-posterior subdivision of organism
annotated property: definition
annotated target: Division of an organism along its anterior-posterior axis.
database_cross_reference: https://orcid.org/0000-0002-1373-1705

somatic muscle
type: Class
subclass of: multicellular structure
definition: A multicellular structure made of one or several myofibers associated with tendon cells that attach the myofiber(s) to the exoskeleton or other organs.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-06-23T16:54:03Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058111
in subset: cur

Axiom
annotated source: somatic muscle
annotated property: definition
annotated target: A multicellular structure made of one or several myofibers associated with tendon cells that attach the myofiber(s) to the exoskeleton or other organs.
database_cross_reference: FlyBase:FBrf0211520

adult hemocyte
type: Class
equivalent class: Class
  intersection of: hemocyte
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: hemocyte
subclass of: Restriction
  on property: part of
  some values from: adult circulatory system
definition: Hemocyte of the adult organism. These cells all arise during embryonic and larval development and persist through metamorphosis and adult life (Holz et al., 2003; Sanchez Bosch et al., 2019).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-05-26T15:07:24Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058143
in subset: cur

Axiom
annotated source: adult hemocyte
annotated property: definition
annotated target: Hemocyte of the adult organism. These cells all arise during embryonic and larval development and persist through metamorphosis and adult life (Holz et al., 2003; Sanchez Bosch et al., 2019).
database_cross_reference: FlyBase:FBrf0162082
database_cross_reference: FlyBase:FBrf0244363

indirect flight muscle precursor cell
type: Class
subclass of: adepithelial cell of wing disc
subclass of: Restriction
  on property: expresses
  some values from: FBgn0003975
subclass of: Restriction
  on property: expresses
  some values from: FBgn0004606
definition: An adepithelial cell of the wing disc that gives rise to an indirect flight muscle cell in the adult. These cells are located around the wing hinge primordium in the wing disc. They are distinguished from other flight muscle precursor cells by their expression of vestigial and zfh1 (Gunage et al., 2014; Zappia et al., 2020).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-06-04T08:38:05Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058198
in subset: cur

Axiom
annotated source: indirect flight muscle precursor cell
annotated property: definition
annotated target: An adepithelial cell of the wing disc that gives rise to an indirect flight muscle cell in the adult. These cells are located around the wing hinge primordium in the wing disc. They are distinguished from other flight muscle precursor cells by their expression of vestigial and zfh1 (Gunage et al., 2014; Zappia et al., 2020).
database_cross_reference: FlyBase:FBrf0226374
database_cross_reference: FlyBase:FBrf0247435

adult peptidergic neuron
type: Class
equivalent class: Class
  intersection of: peptidergic neuron
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: peptidergic neuron
subclass of: adult neuron
definition: Any peptidergic neuron of the adult.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-06-03T18:57:00Z
database_cross_reference: VFB:FBbt_00058202
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058202
in subset: cur

Axiom
annotated source: adult peptidergic neuron
annotated property: definition
annotated target: Any peptidergic neuron of the adult.
database_cross_reference: FBC:Autogenerated

larval peptidergic neuron
type: Class
equivalent class: Class
  intersection of: peptidergic neuron
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: larval neuron
subclass of: peptidergic neuron
definition: Any peptidergic neuron of the larva.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-06-03T18:57:00Z
database_cross_reference: VFB:FBbt_00058212
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058212
in subset: cur

Axiom
annotated source: larval peptidergic neuron
annotated property: definition
annotated target: Any peptidergic neuron of the larva.
database_cross_reference: FBC:Autogenerated

adult muscle cell
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: muscle cell
subclass of: Restriction
  on property: part of
  some values from: adult muscle system
definition: Any muscle cell of the adult.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-06T09:13:41Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058230
in subset: cur

Axiom
annotated source: adult muscle cell
annotated property: definition
annotated target: Any muscle cell of the adult.
database_cross_reference: FBC:Autogenerated

larval muscle cell
type: Class
equivalent class: Class
  intersection of: muscle cell
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: muscle cell
subclass of: Restriction
  on property: part of
  some values from: larval muscle system
definition: Any muscle cell of the larva.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-06T09:15:38Z
has exact synonym: embryonic/larval muscle cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058231
in subset: cur

Axiom
annotated source: larval muscle cell
annotated property: definition
annotated target: Any muscle cell of the larva.
database_cross_reference: FBC:Autogenerated

adult epithelial cell
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: epithelial cell
subclass of: Restriction
  on property: part of
  some values from: adult
definition: Any epithelial cell of the adult.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-27T11:38:48Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058238
in subset: cur

Axiom
annotated source: adult epithelial cell
annotated property: definition
annotated target: Any epithelial cell of the adult.
database_cross_reference: FBC:Autogenerated

larval epithelial cell
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: epithelial cell
subclass of: Restriction
  on property: part of
  some values from: larva
definition: Any epithelial cell of the larva.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-27T11:40:51Z
has exact synonym: embryonic/larval epithelial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058239
in subset: cur

Axiom
annotated source: larval epithelial cell
annotated property: definition
annotated target: Any epithelial cell of the larva.
database_cross_reference: FBC:Autogenerated

adult epidermal cell
type: Class
equivalent class: Class
  intersection of: epidermal cell
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: epidermal cell
subclass of: adult epithelial cell
subclass of: Restriction
  on property: part of
  some values from: adult epidermis
definition: Any epidermal cell of the adult.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-27T11:58:54Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058242
in subset: cur

Axiom
annotated source: adult epidermal cell
annotated property: definition
annotated target: Any epidermal cell of the adult.
database_cross_reference: FBC:Autogenerated

embryonic/larval epidermal cell
type: Class
equivalent class: Class
  intersection of: epidermal cell
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: epidermal cell
subclass of: larval epithelial cell
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval epidermis
definition: Any epidermal cell of the larva.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-27T12:01:09Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058243
in subset: cur

Axiom
annotated source: embryonic/larval epidermal cell
annotated property: definition
annotated target: Any epidermal cell of the larva.
database_cross_reference: FBC:Autogenerated

adult sensory neuron
type: Class
equivalent class: Class
  intersection of: adult neuron
  intersection of: Restriction
    on property: capable of
    some values from: GO_0050906
subclass of: sensory neuron
subclass of: adult neuron
definition: Any adult neuron (FBbt:00047095) that is capable of some detection of stimulus involved in sensory perception (GO:0050906).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-27T12:13:59Z
database_cross_reference: VFB:FBbt_00058244
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058244

Axiom
annotated source: adult sensory neuron
annotated property: definition
annotated target: Any adult neuron (FBbt:00047095) that is capable of some detection of stimulus involved in sensory perception (GO:0050906).
database_cross_reference: FBC:Autogenerated

embryonic/larval sensory neuron
type: Class
equivalent class: Class
  intersection of: larval neuron
  intersection of: Restriction
    on property: capable of
    some values from: GO_0050906
subclass of: larval neuron
subclass of: sensory neuron
definition: Any larval neuron (FBbt:00001446) that is capable of some detection of stimulus involved in sensory perception (GO:0050906).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-27T12:17:06Z
database_cross_reference: VFB:FBbt_00058245
has exact synonym: larval SN
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058245
in subset: cur

Axiom
annotated source: embryonic/larval sensory neuron
annotated property: definition
annotated target: Any larval neuron (FBbt:00001446) that is capable of some detection of stimulus involved in sensory perception (GO:0050906).
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: embryonic/larval sensory neuron
annotated property: hasExactSynonym
annotated target: larval SN
database_cross_reference: FlyBase:FBrf0253566

adult perineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: adult nervous system
  intersection of: Restriction
    on property: part of
    some values from: perineurial glial sheath
subclass of: perineurial glial cell
subclass of: adult surface glial cell
definition: Any glial cell (FBbt:00005144) that is part of some adult nervous system (FBbt:00003559) and is part of some perineurial glial sheath (FBbt:00007089).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-27T16:09:47Z
database_cross_reference: VFB:FBbt_00058251
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058251
in subset: cur

Axiom
annotated source: adult perineurial glial cell
annotated property: definition
annotated target: Any glial cell (FBbt:00005144) that is part of some adult nervous system (FBbt:00003559) and is part of some perineurial glial sheath (FBbt:00007089).
database_cross_reference: FBC:Autogenerated

embryonic/larval perineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: larval nervous system
  intersection of: Restriction
    on property: part of
    some values from: perineurial glial sheath
subclass of: perineurial glial cell
subclass of: larval surface glial cell
definition: Any glial cell (FBbt:00005144) that is part of some larval nervous system (FBbt:00001911) and is part of some perineurial glial sheath (FBbt:00007089).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-27T16:12:18Z
database_cross_reference: VFB:FBbt_00058252
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058252
in subset: cur

Axiom
annotated source: embryonic/larval perineurial glial cell
annotated property: definition
annotated target: Any glial cell (FBbt:00005144) that is part of some larval nervous system (FBbt:00001911) and is part of some perineurial glial sheath (FBbt:00007089).
database_cross_reference: FBC:Autogenerated

PNS perineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: peripheral nervous system
  intersection of: Restriction
    on property: part of
    some values from: perineurial glial sheath
subclass of: PNS glial cell
subclass of: perineurial glial cell
definition: Any glial cell (FBbt:00005144) that is part of some peripheral nervous system (FBbt:00005098) and is part of some perineurial glial sheath (FBbt:00007089).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-27T16:19:16Z
database_cross_reference: VFB:FBbt_00058253
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058253
in subset: cur

Axiom
annotated source: PNS perineurial glial cell
annotated property: definition
annotated target: Any glial cell (FBbt:00005144) that is part of some peripheral nervous system (FBbt:00005098) and is part of some perineurial glial sheath (FBbt:00007089).
database_cross_reference: FBC:Autogenerated

adult subperineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: adult nervous system
  intersection of: Restriction
    on property: part of
    some values from: subperineurial glial sheath
subclass of: subperineurial glial cell
subclass of: adult surface glial cell
definition: Any glial cell (FBbt:00005144) that is part of some adult nervous system (FBbt:00003559) and is part of some subperineurial glial sheath (FBbt:00007091).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-27T16:22:25Z
database_cross_reference: VFB:FBbt_00058254
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058254
in subset: cur

Axiom
annotated source: adult subperineurial glial cell
annotated property: definition
annotated target: Any glial cell (FBbt:00005144) that is part of some adult nervous system (FBbt:00003559) and is part of some subperineurial glial sheath (FBbt:00007091).
database_cross_reference: FBC:Autogenerated

embryonic/larval subperineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: larval nervous system
  intersection of: Restriction
    on property: part of
    some values from: subperineurial glial sheath
subclass of: subperineurial glial cell
subclass of: larval surface glial cell
definition: Any glial cell (FBbt:00005144) that is part of some larval nervous system (FBbt:00001911) and is part of some subperineurial glial sheath (FBbt:00007091).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-27T16:23:19Z
database_cross_reference: VFB:FBbt_00058255
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058255
in subset: cur

Axiom
annotated source: embryonic/larval subperineurial glial cell
annotated property: definition
annotated target: Any glial cell (FBbt:00005144) that is part of some larval nervous system (FBbt:00001911) and is part of some subperineurial glial sheath (FBbt:00007091).
database_cross_reference: FBC:Autogenerated

PNS subperineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: peripheral nervous system
  intersection of: Restriction
    on property: part of
    some values from: subperineurial glial sheath
subclass of: subperineurial glial cell
subclass of: PNS glial cell
definition: Any glial cell (FBbt:00005144) that is part of some peripheral nervous system (FBbt:00005098) and is part of some subperineurial glial sheath (FBbt:00007091).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-27T16:24:56Z
database_cross_reference: VFB:FBbt_00058256
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058256
in subset: cur

Axiom
annotated source: PNS subperineurial glial cell
annotated property: definition
annotated target: Any glial cell (FBbt:00005144) that is part of some peripheral nervous system (FBbt:00005098) and is part of some subperineurial glial sheath (FBbt:00007091).
database_cross_reference: FBC:Autogenerated

adult PNS glial cell
type: Class
equivalent class: Class
  intersection of: PNS glial cell
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: PNS glial cell
subclass of: adult glial cell
subclass of: Restriction
  on property: part of
  some values from: adult peripheral nervous system
definition: Any PNS glial cell of the adult.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-27T16:42:03Z
database_cross_reference: VFB:FBbt_00058258
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058258
in subset: cur

Axiom
annotated source: adult PNS glial cell
annotated property: definition
annotated target: Any PNS glial cell of the adult.
database_cross_reference: FBC:Autogenerated

larval PNS glial cell
type: Class
equivalent class: Class
  intersection of: PNS glial cell
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: larval glial cell
subclass of: PNS glial cell
subclass of: Restriction
  on property: part of
  some values from: larval peripheral nervous system
definition: Any PNS glial cell of the larva.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-27T16:42:39Z
database_cross_reference: VFB:FBbt_00058259
has exact synonym: embryonic/larval PNS glial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058259
in subset: cur

Axiom
annotated source: larval PNS glial cell
annotated property: definition
annotated target: Any PNS glial cell of the larva.
database_cross_reference: FBC:Autogenerated

foregut muscle cell
type: Class
equivalent class: Class
  intersection of: visceral muscle cell
  intersection of: Restriction
    on property: part of
    some values from: foregut
subclass of: visceral muscle cell
subclass of: Restriction
  on property: part of
  some values from: foregut
definition: Any visceral muscle cell (FBbt:00005070) that is part of some foregut (FBbt:00005379).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-09-30T11:09:07Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058266
in subset: cur

Axiom
annotated source: foregut muscle cell
annotated property: definition
annotated target: Any visceral muscle cell (FBbt:00005070) that is part of some foregut (FBbt:00005379).
database_cross_reference: FBC:Autogenerated

dorsal vessel
type: Class
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: circulatory system
definition: A contractile tube located underneath the dorsal epidermis. It ensures the hemolymph circulates within the hemocoel, by letting the hemolymph enter the tube through lateral slits (ostia) in the posterior end and pumping it back into the hemocoel (Rotstein and Paululat, 2016).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-12-08T15:32:57Z
database_cross_reference: UBERON:0015231
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058291
in subset: cur

Axiom
annotated source: dorsal vessel
annotated property: definition
annotated target: A contractile tube located underneath the dorsal epidermis. It ensures the hemolymph circulates within the hemocoel, by letting the hemolymph enter the tube through lateral slits (ostia) in the posterior end and pumping it back into the hemocoel (Rotstein and Paululat, 2016).
database_cross_reference: FlyBase:FBrf0238157

adult salivary gland secretory cell
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: adult salivary gland proper
  intersection of: Restriction
    on property: capable of
    some values from: GO_0032940
subclass of: BFO_0000040
subclass of: adult salivary gland epithelial cell
subclass of: Restriction
  on property: part of
  some values from: adult salivary gland proper
subclass of: Restriction
  on property: capable of
  some values from: GO_0032940
subclass of: Restriction
  on property: expresses
  some values from: FBgn0037672
definition: Columnar epithelial cell of the adult salivary gland responsible for producing and secreting the saliva (Andrew et al., 2000). It expresses the salivary gland-specific transcription factor sage (Fox et al., 2013).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2021-10-04T16:29:29Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058292
in subset: cur

Axiom
annotated source: adult salivary gland secretory cell
annotated property: definition
annotated target: Columnar epithelial cell of the adult salivary gland responsible for producing and secreting the saliva (Andrew et al., 2000). It expresses the salivary gland-specific transcription factor sage (Fox et al., 2013).
database_cross_reference: FlyBase:FBrf0126988
database_cross_reference: FlyBase:FBrf0221452

larval somatic muscle
type: Class
equivalent class: Class
  intersection of: somatic muscle
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: somatic muscle
subclass of: Restriction
  on property: part of
  some values from: larval muscle system
definition: Somatic muscle of the late embryo (stage 17+) or larva that is part of the fully developed larval musculature.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-07-05T13:30:44Z
has exact synonym: embryonic/larval skeletal muscle
has exact synonym: embryonic/larval somatic muscle
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058297
in subset: cur

Axiom
annotated source: larval somatic muscle
annotated property: definition
annotated target: Somatic muscle of the late embryo (stage 17+) or larva that is part of the fully developed larval musculature.
database_cross_reference: FlyBase:FBrf0064803

adult somatic muscle
type: Class
equivalent class: Class
  intersection of: somatic muscle
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: somatic muscle
subclass of: Restriction
  on property: part of
  some values from: adult muscle system
definition: A muscle attached to the inner surface of the adult body wall, extending between articulated or flexibly joined areas, that serves to move the parts of the exoskeleton.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-07-05T13:30:44Z
has exact synonym: adult skeletal muscle
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058784
in subset: cur

Axiom
annotated source: adult somatic muscle
annotated property: definition
annotated target: A muscle attached to the inner surface of the adult body wall, extending between articulated or flexibly joined areas, that serves to move the parts of the exoskeleton.
database_cross_reference: FlyBase:FBrf0007735

adult somatic muscle of head
type: Class
equivalent class: Class
  intersection of: adult somatic muscle
  intersection of: Restriction
    on property: part of
    some values from: adult head
subclass of: adult somatic muscle
subclass of: Restriction
  on property: part of
  some values from: adult head
definition: Somatic muscle that is part of the adult head.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-07-05T13:30:44Z
has exact synonym: skeletal muscle of head
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058785
in subset: cur

Axiom
annotated source: adult somatic muscle of head
annotated property: definition
annotated target: Somatic muscle that is part of the adult head.
database_cross_reference: FBC:SPR

adult somatic muscle of thorax
type: Class
equivalent class: Class
  intersection of: adult somatic muscle
  intersection of: Restriction
    on property: part of
    some values from: adult thorax
subclass of: adult somatic muscle
subclass of: Restriction
  on property: part of
  some values from: adult thorax
definition: Somatic muscle that is part of the adult thorax.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-07-05T13:30:44Z
has exact synonym: skeletal muscle of thorax
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058828
in subset: cur

Axiom
annotated source: adult somatic muscle of thorax
annotated property: definition
annotated target: Somatic muscle that is part of the adult thorax.
database_cross_reference: FBC:SPR

somatic muscle of prothorax
type: Class
equivalent class: Class
  intersection of: adult somatic muscle
  intersection of: Restriction
    on property: part of
    some values from: prothoracic segment
subclass of: adult somatic muscle of thorax
subclass of: Restriction
  on property: part of
  some values from: adult prothoracic segment
definition: Somatic muscle that is part of the prothorax.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-07-05T13:30:44Z
has exact synonym: skeletal muscle of prothorax
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058856
in subset: cur

Axiom
annotated source: somatic muscle of prothorax
annotated property: definition
annotated target: Somatic muscle that is part of the prothorax.
database_cross_reference: FBC:SPR

somatic muscle of mesothorax
type: Class
equivalent class: Class
  intersection of: adult somatic muscle
  intersection of: Restriction
    on property: part of
    some values from: mesothoracic segment
subclass of: adult somatic muscle of thorax
subclass of: Restriction
  on property: part of
  some values from: adult mesothoracic segment
definition: Somatic muscle that is part of the mesothorax.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-07-05T13:30:44Z
has exact synonym: skeletal muscle of mesothorax
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058880
in subset: cur

Axiom
annotated source: somatic muscle of mesothorax
annotated property: definition
annotated target: Somatic muscle that is part of the mesothorax.
database_cross_reference: FBC:SPR

flight muscle
type: Class
subclass of: somatic muscle of mesothorax
definition: Muscle involved in the mechanism of flight. The indirect flight muscles are involved in the deformation of the thoracic terga that bear the wings but are not directly attached to the wing, whereas the direct flight muscles are attached directly to the wing and aid in fine control of its movement. These muscles derive from adepithelial cells associated with the wing disc (Sudarsan et al., 2001; Kozopas and Nusse, 2002).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-07-05T13:30:44Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058881
in subset: cur

Axiom
annotated source: flight muscle
annotated property: definition
annotated target: Muscle involved in the mechanism of flight. The indirect flight muscles are involved in the deformation of the thoracic terga that bear the wings but are not directly attached to the wing, whereas the direct flight muscles are attached directly to the wing and aid in fine control of its movement. These muscles derive from adepithelial cells associated with the wing disc (Sudarsan et al., 2001; Kozopas and Nusse, 2002).
database_cross_reference: FlyBase:FBrf0007735
database_cross_reference: FlyBase:FBrf0064793
database_cross_reference: FlyBase:FBrf0098527
database_cross_reference: FlyBase:FBrf0111704
database_cross_reference: FlyBase:FBrf0141467
database_cross_reference: FlyBase:FBrf0144806

indirect flight muscle
type: Class
subclass of: flight muscle
definition: Muscle involved in flight that is not directly attached to the wing base. It derives from an indirect flight muscle precursor cell of the wing disc (Sudarsan et al., 2001).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-07-05T13:30:44Z
has exact synonym: IFM
has exact synonym: fibrillar muscle
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058882
in subset: cur

Axiom
annotated source: indirect flight muscle
annotated property: definition
annotated target: Muscle involved in flight that is not directly attached to the wing base. It derives from an indirect flight muscle precursor cell of the wing disc (Sudarsan et al., 2001).
database_cross_reference: FlyBase:FBrf0007735
database_cross_reference: FlyBase:FBrf0064793
database_cross_reference: FlyBase:FBrf0098527
database_cross_reference: FlyBase:FBrf0111704
database_cross_reference: FlyBase:FBrf0141467

Axiom
annotated source: indirect flight muscle
annotated property: hasExactSynonym
annotated target: IFM
database_cross_reference: FlyBase:FBrf0064793

Axiom
annotated source: indirect flight muscle
annotated property: hasExactSynonym
annotated target: fibrillar muscle
database_cross_reference: FlyBase:FBrf0064793

adult somatic muscle of abdomen
type: Class
equivalent class: Class
  intersection of: adult somatic muscle
  intersection of: Restriction
    on property: part of
    some values from: adult abdomen
subclass of: adult somatic muscle
subclass of: Restriction
  on property: part of
  some values from: adult abdomen
definition: Somatic muscle that is part of the adult abdomen.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-07-05T13:30:44Z
has exact synonym: skeletal muscle of abdomen
has OBO namespace: fly_anatomy.ontology
id: FBbt:00058966
in subset: cur

Axiom
annotated source: adult somatic muscle of abdomen
annotated property: definition
annotated target: Somatic muscle that is part of the adult abdomen.
database_cross_reference: FlyBase:FBrf0007735
database_cross_reference: FlyBase:FBrf0064793
database_cross_reference: FlyBase:FBrf0192609
database_cross_reference: FlyBase:FBrf0193310

male abdominal muscle
type: Class
equivalent class: Class
  intersection of: adult somatic muscle of abdomen
  intersection of: Restriction
    on property: has characteristic
    some values from: PATO_0060002
subclass of: male-specific anatomical entity
subclass of: adult somatic muscle of abdomen
definition: Abdominal skeletal muscle that is specific to males.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-07-05T13:30:44Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059016
in subset: cur

Axiom
annotated source: male abdominal muscle
annotated property: definition
annotated target: Abdominal skeletal muscle that is specific to males.
database_cross_reference: FlyBase:FBrf0007734

embryonic somatic muscle
type: Class
subclass of: somatic muscle
subclass of: Restriction
  on property: part of
  some values from: somatic muscle primordium
definition: Somatic muscle of the embryo, found prior to the fully-formed larval muscle pattern visible at stage 17. At stage 12, myoblasts of the somatic musculature are found in the superficial layer of the mesoderm, these differentiate and fuse to form muscle fibers by the end of stage 13. Between stages 13 and 17, the muscle fibers insert at apodemes formed by the epidermis and stretch during dorsal closure and head involution.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-07-05T13:30:44Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059033
in subset: cur

Axiom
annotated source: embryonic somatic muscle
annotated property: definition
annotated target: Somatic muscle of the embryo, found prior to the fully-formed larval muscle pattern visible at stage 17. At stage 12, myoblasts of the somatic musculature are found in the superficial layer of the mesoderm, these differentiate and fuse to form muscle fibers by the end of stage 13. Between stages 13 and 17, the muscle fibers insert at apodemes formed by the epidermis and stretch during dorsal closure and head involution.
database_cross_reference: FlyBase:FBrf0064803

glial cell of leg disc
type: Class
equivalent class: Class
  intersection of: larval glial cell
  intersection of: Restriction
    on property: part of
    some values from: leg disc
subclass of: larval glial cell
subclass of: Restriction
  on property: part of
  some values from: leg disc
definition: Glial cell that is embedded in the epithelium of a leg disc (Tripathi and Irvine, 2022; Tse et al., 2022).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-09-09T15:56:52Z
database_cross_reference: VFB:FBbt_00059168
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059168
in subset: cur

Axiom
annotated source: glial cell of leg disc
annotated property: definition
annotated target: Glial cell that is embedded in the epithelium of a leg disc (Tripathi and Irvine, 2022; Tse et al., 2022).
database_cross_reference: FlyBase:FBrf0253125
database_cross_reference: FlyBase:FBrf0253840

adult postcephalic region
type: Class
subclass of: organism subdivision
subclass of: Restriction
  on property: part of
  some values from: adult
definition: The part of the adult Drosophila organism that encompasses the whole body except the head (Li et al., 2022).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2023-03-15T19:10:38Z
has narrow synonym: adult trunk
has OBO namespace: fly_anatomy.ontology
has related synonym: adult body
id: FBbt:00059181
in subset: cur

Axiom
annotated source: adult postcephalic region
annotated property: definition
annotated target: The part of the adult Drosophila organism that encompasses the whole body except the head (Li et al., 2022).
database_cross_reference: FlyBase:FBrf0252876

Axiom
annotated source: adult postcephalic region
annotated property: hasNarrowSynonym
annotated target: adult trunk
database_cross_reference: FlyBase:FBrf0055836

embryonic dorsal sensory organ precursor cluster
type: Class
subclass of: peripheral nervous system precursor cluster
definition: A cluster of sensory organ precursor cells located dorsally in an embryonic segment (Ghysen et al., 1986).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-12-07T12:02:31Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059182
in subset: cur

Axiom
annotated source: embryonic dorsal sensory organ precursor cluster
annotated property: definition
annotated target: A cluster of sensory organ precursor cells located dorsally in an embryonic segment (Ghysen et al., 1986).
database_cross_reference: FlyBase:FBrf0045361

embryonic ventral sensory organ precursor cluster group
type: Class
subclass of: peripheral nervous system precursor cluster
definition: A group of sensory organ precursor cells located ventrally in an embryonic segment. It is divided into two smaller clusters called ventral and ventral' (Bodmer and Jan, 1987; Ghysen et al., 1986).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-12-07T12:16:17Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059198
in subset: cur

Axiom
annotated source: embryonic ventral sensory organ precursor cluster group
annotated property: definition
annotated target: A group of sensory organ precursor cells located ventrally in an embryonic segment. It is divided into two smaller clusters called ventral and ventral' (Bodmer and Jan, 1987; Ghysen et al., 1986).
database_cross_reference: FlyBase:FBrf0045361
database_cross_reference: FlyBase:FBrf0047289

embryonic ventral sensory organ precursor cluster
type: Class
subclass of: peripheral nervous system precursor cluster
subclass of: Restriction
  on property: part of
  some values from: embryonic ventral sensory organ precursor cluster group
definition: Ventralmost cluster of sensory organ precursor cells, located ventrally within the embryonic ventral sensory organ precursor cluster group (Bodmer and Jan, 1987; Ghysen et al., 1986).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-12-07T14:01:20Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059199
in subset: cur

Axiom
annotated source: embryonic ventral sensory organ precursor cluster
annotated property: definition
annotated target: Ventralmost cluster of sensory organ precursor cells, located ventrally within the embryonic ventral sensory organ precursor cluster group (Bodmer and Jan, 1987; Ghysen et al., 1986).
database_cross_reference: FlyBase:FBrf0045361
database_cross_reference: FlyBase:FBrf0047289

embryonic abdominal ventral sensory organ precursor cluster
type: Class
equivalent class: Class
  intersection of: embryonic ventral sensory organ precursor cluster
  intersection of: Restriction
    on property: part of
    some values from: embryonic abdominal segment
subclass of: embryonic ventral sensory organ precursor cluster
subclass of: Restriction
  on property: part of
  some values from: embryonic abdominal ventral sensory organ precursor cluster group
definition: Any embryonic ventral sensory organ precursor cluster (FBbt:00059199) that is part of some embryonic abdominal segment (FBbt:00000172).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-12-07T14:05:00Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059200
in subset: cur

Axiom
annotated source: embryonic abdominal ventral sensory organ precursor cluster
annotated property: definition
annotated target: Any embryonic ventral sensory organ precursor cluster (FBbt:00059199) that is part of some embryonic abdominal segment (FBbt:00000172).
database_cross_reference: FBC:Autogenerated

embryonic thoracic ventral sensory organ precursor cluster
type: Class
equivalent class: Class
  intersection of: embryonic ventral sensory organ precursor cluster
  intersection of: Restriction
    on property: part of
    some values from: embryonic thoracic segment
subclass of: embryonic ventral sensory organ precursor cluster
subclass of: Restriction
  on property: part of
  some values from: embryonic thoracic ventral sensory organ precursor cluster group
definition: Any embryonic ventral sensory organ precursor cluster (FBbt:00059199) that is part of some embryonic thoracic segment (FBbt:00000167).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2022-12-07T14:06:27Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059201
in subset: cur

Axiom
annotated source: embryonic thoracic ventral sensory organ precursor cluster
annotated property: definition
annotated target: Any embryonic ventral sensory organ precursor cluster (FBbt:00059199) that is part of some embryonic thoracic segment (FBbt:00000167).
database_cross_reference: FBC:Autogenerated

adult ring gland projection neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: adult brain
  intersection of: Restriction
    on property: fasciculates with
    some values from: nervus corporis cardiaci
subclass of: adult efferent neuron
subclass of: Restriction
  on property: has soma location
  some values from: adult brain
subclass of: Restriction
  on property: fasciculates with
  some values from: adult nervus corporis cardiaci
definition: Any neuron that has its soma in the adult brain and fasciculates with the nervus corporis cardiaci towards the ring gland.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2023-06-13T16:47:28Z
has broad synonym: adult brain NSC
has broad synonym: adult brain neurosecretory neuron
database_cross_reference: VFB:FBbt_00059246
has exact synonym: adult brain endocrine neuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059246
in subset: cur

Axiom
annotated source: adult ring gland projection neuron
annotated property: definition
annotated target: Any neuron that has its soma in the adult brain and fasciculates with the nervus corporis cardiaci towards the ring gland.
database_cross_reference: FlyBase:FBrf0260535
database_cross_reference: FlyBase:FBrf0260546

Axiom
annotated source: adult ring gland projection neuron
annotated property: hasBroadSynonym
annotated target: adult brain NSC
database_cross_reference: doi:10.7554/eLife.102684.1

Axiom
annotated source: adult ring gland projection neuron
annotated property: hasBroadSynonym
annotated target: adult brain neurosecretory neuron
database_cross_reference: doi:10.7554/eLife.102684.1

adult salivary gland epithelial cell
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: adult salivary gland
subclass of: adult epithelial cell
subclass of: Restriction
  on property: part of
  some values from: adult salivary gland
definition: Any epithelial cell (FBbt:00000124) that is part of some adult salivary gland (FBbt:00003135).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2023-11-09T15:31:12Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059269
in subset: cur

Axiom
annotated source: adult salivary gland epithelial cell
annotated property: definition
annotated target: Any epithelial cell (FBbt:00000124) that is part of some adult salivary gland (FBbt:00003135).
database_cross_reference: FBC:Autogenerated

adult cell body glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: cell body rind of adult central nervous system
subclass of: cell body glial cell
subclass of: adult CNS glial cell
subclass of: Restriction
  on property: part of
  some values from: cell body rind of adult central nervous system
definition: Glial cell of the adult that is associated with the cell body rind of the brain or the ventral nerve cord.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2023-11-09T15:38:09Z
database_cross_reference: VFB:FBbt_00059270
has exact synonym: adult cortex glial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059270
in subset: cur

Axiom
annotated source: adult cell body glial cell
annotated property: definition
annotated target: Glial cell of the adult that is associated with the cell body rind of the brain or the ventral nerve cord.
database_cross_reference: FlyBase:FBrf0250530

Axiom
annotated source: adult cell body glial cell
annotated property: hasExactSynonym
annotated target: adult cortex glial cell
database_cross_reference: FlyBase:FBrf0250530

CNS neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: central nervous system
subclass of: neuron
subclass of: Restriction
  on property: has soma location
  some values from: central nervous system
definition: Any neuron that has its soma in the central nervous system.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2023-11-09T16:06:03Z
database_cross_reference: VFB:FBbt_00059271
has exact synonym: central nervous system neuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059271
in subset: cur

Axiom
annotated source: CNS neuron
annotated property: definition
annotated target: Any neuron that has its soma in the central nervous system.
database_cross_reference: https://orcid.org/0000-0002-6095-8718

PNS neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: peripheral nervous system
subclass of: neuron
subclass of: Restriction
  on property: has soma location
  some values from: peripheral nervous system
definition: Any neuron that has its soma in the peripheral nervous system.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2023-11-09T16:08:28Z
database_cross_reference: VFB:FBbt_00059272
has exact synonym: peripheral nervous system neuron
has OBO namespace: fly_anatomy.ontology
has related synonym: afferent neuron
id: FBbt:00059272
in subset: cur

Axiom
annotated source: PNS neuron
annotated property: definition
annotated target: Any neuron that has its soma in the peripheral nervous system.
database_cross_reference: https://orcid.org/0000-0002-6095-8718

Axiom
annotated source: PNS neuron
annotated property: hasRelatedSynonym
annotated target: afferent neuron
database_cross_reference: FlyBase:FBrf0260546

larval CNS neuron
type: Class
equivalent class: Class
  intersection of: CNS neuron
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: larval neuron
subclass of: CNS neuron
subclass of: Restriction
  on property: has soma location
  some values from: larval central nervous system
definition: Any neuron that has its soma in the late embryonic or larval central nervous system.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2023-11-09T16:11:09Z
database_cross_reference: VFB:FBbt_00059273
has exact synonym: embryonic/larval central nervous system neuron
has exact synonym: larval central nervous system neuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059273
in subset: cur

Axiom
annotated source: larval CNS neuron
annotated property: definition
annotated target: Any neuron that has its soma in the late embryonic or larval central nervous system.
database_cross_reference: https://orcid.org/0000-0002-6095-8718

adult CNS neuron
type: Class
equivalent class: Class
  intersection of: CNS neuron
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: adult neuron
subclass of: CNS neuron
subclass of: Restriction
  on property: has soma location
  some values from: adult central nervous system
definition: Any neuron that has its soma in the adult central nervous system.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2023-11-09T16:11:42Z
database_cross_reference: VFB:FBbt_00059274
has exact synonym: adult central nervous system neuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059274
in subset: cur

Axiom
annotated source: adult CNS neuron
annotated property: definition
annotated target: Any neuron that has its soma in the adult central nervous system.
database_cross_reference: https://orcid.org/0000-0002-6095-8718

larval PNS neuron
type: Class
equivalent class: Class
  intersection of: PNS neuron
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: larval neuron
subclass of: PNS neuron
subclass of: Restriction
  on property: has soma location
  some values from: larval peripheral nervous system
definition: Any neuron that has its soma in the late embryonic or larval peripheral nervous system.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2023-11-09T16:12:15Z
database_cross_reference: VFB:FBbt_00059275
has exact synonym: embryonic/larval peripheral nervous system neuron
has exact synonym: larval peripheral nervous system neuron
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059275
in subset: cur

Axiom
annotated source: larval PNS neuron
annotated property: definition
annotated target: Any neuron that has its soma in the late embryonic or larval peripheral nervous system.
database_cross_reference: https://orcid.org/0000-0002-6095-8718

adult PNS neuron
type: Class
equivalent class: Class
  intersection of: PNS neuron
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: adult neuron
subclass of: PNS neuron
subclass of: Restriction
  on property: has soma location
  some values from: adult peripheral nervous system
definition: Any neuron that has its soma in the adult peripheral nervous system.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2023-11-09T16:12:44Z
database_cross_reference: VFB:FBbt_00059276
has exact synonym: adult peripheral nervous system neuron
has OBO namespace: fly_anatomy.ontology
has related synonym: adult afferent neuron
id: FBbt:00059276
in subset: cur

Axiom
annotated source: adult PNS neuron
annotated property: definition
annotated target: Any neuron that has its soma in the adult peripheral nervous system.
database_cross_reference: https://orcid.org/0000-0002-6095-8718

Axiom
annotated source: adult PNS neuron
annotated property: hasRelatedSynonym
annotated target: adult afferent neuron
database_cross_reference: FlyBase:FBrf0260546

adult VNC cell body glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: adult ventral nerve cord cell body rind
subclass of: adult cell body glial cell
subclass of: Restriction
  on property: part of
  some values from: adult ventral nerve cord cell body rind
definition: Any glial cell (FBbt:00005144) that is part of some adult ventral nerve cord cell body rind (FBbt:00111082).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-12T15:28:25Z
database_cross_reference: VFB:FBbt_00059288
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059288

Axiom
annotated source: adult VNC cell body glial cell
annotated property: definition
annotated target: Any glial cell (FBbt:00005144) that is part of some adult ventral nerve cord cell body rind (FBbt:00111082).
database_cross_reference: FBC:Autogenerated

adult VNC neuron
type: Class
equivalent class: Class
  intersection of: neuron
  intersection of: Restriction
    on property: has soma location
    some values from: adult ventral nerve cord cell body rind
subclass of: adult CNS neuron
subclass of: Restriction
  on property: has soma location
  some values from: adult ventral nerve cord cell body rind
definition: Any neuron (FBbt:00005106) that has its soma located in some adult ventral nerve cord cell body rind (FBbt:00111082).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-12T15:31:58Z
database_cross_reference: VFB:FBbt_00059289
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059289

Axiom
annotated source: adult VNC neuron
annotated property: definition
annotated target: Any neuron (FBbt:00005106) that has its soma located in some adult ventral nerve cord cell body rind (FBbt:00111082).
database_cross_reference: FBC:Autogenerated

somatic cell of ectoderm anlage
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: ectoderm anlage
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: ectoderm anlage
definition: A(n) somatic cell that is part of a(n) ectoderm anlage.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059301

Axiom
annotated source: somatic cell of ectoderm anlage
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) ectoderm anlage.
database_cross_reference: FBC:Autogenerated

somatic cell of endoderm anlage
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: endoderm anlage
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: endoderm anlage
definition: A(n) somatic cell that is part of a(n) endoderm anlage.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059302

Axiom
annotated source: somatic cell of endoderm anlage
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) endoderm anlage.
database_cross_reference: FBC:Autogenerated

somatic cell of mesoderm anlage
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: mesoderm anlage
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: mesoderm anlage
definition: A(n) somatic cell that is part of a(n) mesoderm anlage.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059303

Axiom
annotated source: somatic cell of mesoderm anlage
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) mesoderm anlage.
database_cross_reference: FBC:Autogenerated

somatic cell of trunk mesoderm anlage
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: trunk mesoderm anlage
subclass of: somatic cell of mesoderm anlage
subclass of: Restriction
  on property: part of
  some values from: trunk mesoderm anlage
definition: A(n) somatic cell that is part of a(n) trunk mesoderm anlage.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059304

Axiom
annotated source: somatic cell of trunk mesoderm anlage
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) trunk mesoderm anlage.
database_cross_reference: FBC:Autogenerated

somatic cell of ectoderm
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: ectoderm
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: ectoderm
definition: A(n) somatic cell that is part of a(n) ectoderm.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has exact synonym: ectodermal cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059305

Axiom
annotated source: somatic cell of ectoderm
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) ectoderm.
database_cross_reference: FBC:Autogenerated

somatic cell of endoderm
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: endoderm
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: endoderm
definition: A(n) somatic cell that is part of a(n) endoderm.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has exact synonym: endodermal cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059306

Axiom
annotated source: somatic cell of endoderm
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) endoderm.
database_cross_reference: FBC:Autogenerated

somatic cell of mesoderm
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: mesoderm
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: mesoderm
definition: A(n) somatic cell that is part of a(n) mesoderm.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has exact synonym: mesodermal cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059307

Axiom
annotated source: somatic cell of mesoderm
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) mesoderm.
database_cross_reference: FBC:Autogenerated

somatic cell of somatic trunk mesoderm
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: somatic trunk mesoderm
subclass of: somatic cell of trunk mesoderm
subclass of: Restriction
  on property: part of
  some values from: somatic trunk mesoderm
definition: A(n) somatic cell that is part of a(n) somatic trunk mesoderm.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059308

Axiom
annotated source: somatic cell of somatic trunk mesoderm
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) somatic trunk mesoderm.
database_cross_reference: FBC:Autogenerated

somatic cell of visceral trunk mesoderm
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: visceral trunk mesoderm
subclass of: somatic cell of trunk mesoderm
subclass of: Restriction
  on property: part of
  some values from: visceral trunk mesoderm
definition: A(n) somatic cell that is part of a(n) visceral trunk mesoderm.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059309

Axiom
annotated source: somatic cell of visceral trunk mesoderm
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) visceral trunk mesoderm.
database_cross_reference: FBC:Autogenerated

somatic cell of trunk mesoderm
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: trunk mesoderm
subclass of: somatic cell of mesoderm
subclass of: Restriction
  on property: part of
  some values from: trunk mesoderm
definition: A(n) somatic cell that is part of a(n) trunk mesoderm.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059310

Axiom
annotated source: somatic cell of trunk mesoderm
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) trunk mesoderm.
database_cross_reference: FBC:Autogenerated

somatic cell of cardiogenic mesoderm
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: cardiogenic mesoderm
subclass of: somatic cell of trunk mesoderm
subclass of: Restriction
  on property: part of
  some values from: cardiogenic mesoderm
definition: A(n) somatic cell that is part of a(n) cardiogenic mesoderm.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059311

Axiom
annotated source: somatic cell of cardiogenic mesoderm
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) cardiogenic mesoderm.
database_cross_reference: FBC:Autogenerated

somatic cell of embryonic terminal segment
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: embryonic terminal segment
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: embryonic terminal segment
definition: A(n) somatic cell that is part of a(n) embryonic terminal segment.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059312

Axiom
annotated source: somatic cell of embryonic terminal segment
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) embryonic terminal segment.
database_cross_reference: FBC:Autogenerated

somatic cell of stage 5 embryo
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: stage 5 embryo
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: stage 5 embryo
definition: A(n) somatic cell that is part of a(n) stage 5 embryo.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has exact synonym: blastoderm cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059313

Axiom
annotated source: somatic cell of stage 5 embryo
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) stage 5 embryo.
database_cross_reference: FBC:Autogenerated

somatic cell of embryonic/larval hindgut
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: embryonic/larval hindgut
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval hindgut
definition: A(n) somatic cell that is part of a(n) embryonic/larval hindgut.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059315

Axiom
annotated source: somatic cell of embryonic/larval hindgut
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) embryonic/larval hindgut.
database_cross_reference: FBC:Autogenerated

somatic cell of embryonic/larval salivary gland
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: embryonic/larval salivary gland
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: embryonic/larval salivary gland
definition: A(n) somatic cell that is part of a(n) embryonic/larval salivary gland.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059317

Axiom
annotated source: somatic cell of embryonic/larval salivary gland
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) embryonic/larval salivary gland.
database_cross_reference: FBC:Autogenerated

somatic cell of inclusive hindgut primordium
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: inclusive hindgut primordium
subclass of: somatic cell of trunk ectoderm
subclass of: Restriction
  on property: part of
  some values from: inclusive hindgut primordium
definition: A(n) somatic cell that is part of a(n) inclusive hindgut primordium.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059318

Axiom
annotated source: somatic cell of inclusive hindgut primordium
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) inclusive hindgut primordium.
database_cross_reference: FBC:Autogenerated

somatic cell of presumptive embryonic salivary gland
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: presumptive embryonic salivary gland
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: presumptive embryonic salivary gland
definition: A(n) somatic cell that is part of a(n) presumptive embryonic salivary gland.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2024-04-24T15:19:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059322

Axiom
annotated source: somatic cell of presumptive embryonic salivary gland
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) presumptive embryonic salivary gland.
database_cross_reference: FBC:Autogenerated

somatic cell of trunk ectoderm
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: trunk ectoderm
subclass of: somatic cell of ectoderm
subclass of: Restriction
  on property: part of
  some values from: trunk ectoderm
definition: A(n) somatic cell that is part of a(n) trunk ectoderm.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2025-01-16T16:51:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059340

Axiom
annotated source: somatic cell of trunk ectoderm
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) trunk ectoderm.
database_cross_reference: FBC:Autogenerated

somatic cell of dorsal ectoderm
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: dorsal ectoderm
subclass of: somatic cell of trunk ectoderm
subclass of: Restriction
  on property: part of
  some values from: dorsal ectoderm
definition: A(n) somatic cell that is part of a(n) dorsal ectoderm.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2025-01-16T16:51:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059341

Axiom
annotated source: somatic cell of dorsal ectoderm
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) dorsal ectoderm.
database_cross_reference: FBC:Autogenerated

somatic cell of anterior ectoderm
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: anterior ectoderm
subclass of: somatic cell of ectoderm
subclass of: Restriction
  on property: part of
  some values from: anterior ectoderm
definition: A(n) somatic cell that is part of a(n) anterior ectoderm.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2025-01-16T16:51:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059342

Axiom
annotated source: somatic cell of anterior ectoderm
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) anterior ectoderm.
database_cross_reference: FBC:Autogenerated

somatic cell of fat body/gonad primordium
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: fat body/gonad primordium
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: fat body/gonad primordium
definition: A(n) somatic cell that is part of a(n) fat body/gonad primordium.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2025-01-16T16:51:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059345

Axiom
annotated source: somatic cell of fat body/gonad primordium
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) fat body/gonad primordium.
database_cross_reference: FBC:Autogenerated

somatic cell of Malpighian tubule primordium
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: Malpighian tubule primordium
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: Malpighian tubule primordium
definition: A(n) somatic cell that is part of a(n) Malpighian tubule primordium.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2025-01-16T16:51:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059349

Axiom
annotated source: somatic cell of Malpighian tubule primordium
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) Malpighian tubule primordium.
database_cross_reference: FBC:Autogenerated

somatic cell of dorsal epidermis primordium
type: Class
equivalent class: Class
  intersection of: somatic cell
  intersection of: Restriction
    on property: part of
    some values from: dorsal epidermis primordium
subclass of: somatic cell
subclass of: Restriction
  on property: part of
  some values from: dorsal epidermis primordium
definition: A(n) somatic cell that is part of a(n) dorsal epidermis primordium.
contributor: https://orcid.org/0000-0002-6095-8718
date: 2025-01-16T16:51:10Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059351

Axiom
annotated source: somatic cell of dorsal epidermis primordium
annotated property: definition
annotated target: A(n) somatic cell that is part of a(n) dorsal epidermis primordium.
database_cross_reference: FBC:Autogenerated

larval hindgut epithelial cell
type: Class
equivalent class: Class
  intersection of: epithelial cell
  intersection of: Restriction
    on property: part of
    some values from: embryonic/larval hindgut
subclass of: larval epithelial cell
subclass of: somatic cell of embryonic/larval hindgut
definition: Any epithelial cell (FBbt:00000124) that is part of some embryonic/larval hindgut (FBbt:00001891).
contributor: https://orcid.org/0000-0002-6095-8718
date: 2025-01-16T18:36:11Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00059357
in subset: cur

Axiom
annotated source: larval hindgut epithelial cell
annotated property: definition
annotated target: Any epithelial cell (FBbt:00000124) that is part of some embryonic/larval hindgut (FBbt:00001891).
database_cross_reference: FBC:Autogenerated

larval gnathal ganglion
type: Class
equivalent class: Class
  intersection of: gnathal ganglion
  intersection of: Restriction
    on property: overlaps
    some values from: larva
subclass of: gnathal ganglion
subclass of: Restriction
  on property: part of
  some values from: larval subesophageal zone
definition: Region of the embryonic/larval central nervous system consisting of the neuromeres of the three gnathal segments; mandibular, maxillary and labial (Hartenstein et al., 2018). Compared to thoracic and abdominal neuromeres, the number and size of primary lineages are decreased in the labial neuromere, and decrease further in each successive anterior gnathal neuromere (Rickert et al., 2018). It is found in the subesophageal zone, between the tritocerebrum and the prothoracic neuromere (Hartenstein et al., 2018). It separates from the prothoracic neuromere during metamorphosis (Kendroud et al., 2018).
contributor: Simon-Reeve-2162827703
date: 2010-04-09T04:13:51Z
has broad synonym: larval subesophageal zone
database_cross_reference: VFB:FBbt_00100138
database_cross_reference: larvalbrain_neuropil:389
database_cross_reference: larvalbrain_neuropil:567
has exact synonym: embryonic/larval SOG
has exact synonym: embryonic/larval gnathal ganglion
has exact synonym: embryonic/larval subesophageal ganglion
has exact synonym: larval GNG
has exact synonym: larval SEG
has exact synonym: larval SOG
has OBO namespace: fly_anatomy.ontology
has related synonym: hindbrain
has related synonym: larval suboesophageal ganglion
id: FBbt:00100138

Axiom
annotated source: larval gnathal ganglion
annotated property: definition
annotated target: Region of the embryonic/larval central nervous system consisting of the neuromeres of the three gnathal segments; mandibular, maxillary and labial (Hartenstein et al., 2018). Compared to thoracic and abdominal neuromeres, the number and size of primary lineages are decreased in the labial neuromere, and decrease further in each successive anterior gnathal neuromere (Rickert et al., 2018). It is found in the subesophageal zone, between the tritocerebrum and the prothoracic neuromere (Hartenstein et al., 2018). It separates from the prothoracic neuromere during metamorphosis (Kendroud et al., 2018).
database_cross_reference: FlyBase:FBrf0007733
database_cross_reference: FlyBase:FBrf0134489
database_cross_reference: FlyBase:FBrf0237251
database_cross_reference: FlyBase:FBrf0237252
database_cross_reference: FlyBase:FBrf0238045
database_cross_reference: FlyBase:FBrf0247585

Axiom
annotated source: larval gnathal ganglion
annotated property: hasBroadSynonym
annotated target: larval subesophageal zone
database_cross_reference: FlyBase:FBrf0238045

Axiom
annotated source: larval gnathal ganglion
annotated property: hasExactSynonym
annotated target: embryonic/larval subesophageal ganglion
database_cross_reference: FlyBase:FBrf0237252

Axiom
annotated source: larval gnathal ganglion
annotated property: hasExactSynonym
annotated target: larval SEG
database_cross_reference: FlyBase:FBrf0237252

Axiom
annotated source: larval gnathal ganglion
annotated property: hasRelatedSynonym
annotated target: hindbrain
database_cross_reference: FlyBase:FBrf0134489

cell body rind region
type: Class
subclass of: multi-cell-component structure
subclass of: Restriction
  on property: part of
  some values from: cell body rind of the central nervous system
definition: A subdivision of the cell body rind of the central nervous system. It includes the neuronal cell bodies.
contributor: Simon-Reeve-2162827703
date: 2010-09-08T02:26:08Z
database_cross_reference: VFB:FBbt_00100200
has exact synonym: cell body layer
has exact synonym: cortex region
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100200
comment: Ito et al. (2014) may further subdivide cortex/rind regions into multiple facets. Subdivisions should be denoted by the addition of a single letter body-axis direction, e.g. rLHa for anterior to the lateral horn; rSMPm for medial to the superior medial protocerebrum, etc.

Axiom
annotated source: cell body rind region
annotated property: definition
annotated target: A subdivision of the cell body rind of the central nervous system. It includes the neuronal cell bodies.
database_cross_reference: FlyBase:FBrf0224194
database_cross_reference: https://orcid.org/0000-0002-7073-9172

Axiom
annotated source: cell body rind region
annotated property: hasExactSynonym
annotated target: cell body layer
database_cross_reference: FlyBase:FBrf0224194

cell body rind of adult gnathal ganglion
type: Class
subclass of: cell body rind region
subclass of: Restriction
  on property: part of
  some values from: adult gnathal ganglion
subclass of: Restriction
  on property: part of
  some values from: cell body rind of adult subesophageal zone
definition: Region of the adult brain cell body rind that overlies the neuropil of the gnathal ganglion.
contributor: Simon-Reeve-2162827703
date: 2010-09-08T02:52:27Z
database_cross_reference: VFB:FBbt_00100210
has exact synonym: GCBR
has exact synonym: cell body rind around the GNG
has exact synonym: cell body rind around the gnathal ganglion
has exact synonym: cortex of adult gnathal ganglion
has exact synonym: rGNG
has OBO namespace: fly_anatomy.ontology
has related synonym: SOG cortex
has related synonym: cortex of subesophageal ganglion
has related synonym: cortex of suboesophageal ganglion
has related synonym: subesophageal ganglion cell body rind
has related synonym: suboesophageal ganglion cell body rind
id: FBbt:00100210

Axiom
annotated source: cell body rind of adult gnathal ganglion
annotated property: definition
annotated target: Region of the adult brain cell body rind that overlies the neuropil of the gnathal ganglion.
database_cross_reference: FlyBase:FBrf0224194

Axiom
annotated source: cell body rind of adult gnathal ganglion
annotated property: hasExactSynonym
annotated target: GCBR
database_cross_reference: FlyBase:FBrf0224194
has synonym type: BRAIN NAME ABV

Axiom
annotated source: cell body rind of adult gnathal ganglion
annotated property: hasExactSynonym
annotated target: cell body rind around the GNG
database_cross_reference: FlyBase:FBrf0224194

Axiom
annotated source: cell body rind of adult gnathal ganglion
annotated property: hasExactSynonym
annotated target: rGNG
database_cross_reference: FlyBase:FBrf0224194
has synonym type: BRAIN NAME ABV

abdominal sensory neuron
type: Class
equivalent class: Class
  intersection of: sensory neuron
  intersection of: Restriction
    on property: has soma location
    some values from: abdomen
subclass of: abdominal neuron
subclass of: sensory neuron
definition: Any sensory neuron (FBbt:00005124) that has its soma located in some abdomen (FBbt:00000020).
contributor: Simon-Reeve-2162827703
date: 2010-10-21T10:01:42Z
database_cross_reference: VFB:FBbt_00100296
has exact synonym: sensory neuron of abdomen
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100296

Axiom
annotated source: abdominal sensory neuron
annotated property: definition
annotated target: Any sensory neuron (FBbt:00005124) that has its soma located in some abdomen (FBbt:00000020).
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: abdominal sensory neuron
annotated property: hasExactSynonym
annotated target: sensory neuron of abdomen
database_cross_reference: FBC:SPR

multicellular structure
type: Class
subclass of: anatomical structure
definition: Anatomical structure that has multiple cells as parts.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2010-11-02T02:25:04Z
database_cross_reference: UBERON:0010000
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100313

Axiom
annotated source: multicellular structure
annotated property: definition
annotated target: Anatomical structure that has multiple cells as parts.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

duct
type: Class
subclass of: epithelial tube
contributor: https://orcid.org/0000-0002-7073-9172
date: 2010-11-02T04:58:18Z
database_cross_reference: UBERON:0000058
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100314

gut section
type: Class
subclass of: organ system subdivision
subclass of: Restriction
  on property: part of
  some values from: gut
definition: A subdivision of the gut along its long axis.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2010-11-02T05:21:35Z
database_cross_reference: UBERON:0004921
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100315

Axiom
annotated source: gut section
annotated property: definition
annotated target: A subdivision of the gut along its long axis.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

gland
type: Class
subclass of: BFO_0000040
subclass of: multicellular structure
subclass of: Restriction
  on property: capable of
  some values from: GO_0046903
definition: Structure that produces and releases a chemical secretion. Exocrine glands release to the surface of the body or into a lumen, whereas endocrine glands release into the circulation.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2010-11-02T05:39:45Z
database_cross_reference: UBERON:0002530
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100317

Axiom
annotated source: gland
annotated property: definition
annotated target: Structure that produces and releases a chemical secretion. Exocrine glands release to the surface of the body or into a lumen, whereas endocrine glands release into the circulation.
database_cross_reference: doi:10.1016/j.mce.2023.112108
database_cross_reference: doi:10.1146/annurev-ento-011624-013339

somatic cell
type: Class
subclass of: cell
definition: Any cell that is not a germ cell (Okada, 1998). During development, somatic cells differentiate into various types, but they do not persist beyond the lifespan of a single organism (Okada, 1998).
contributor: https://orcid.org/0000-0002-7073-9172
date: 2010-11-04T08:35:02Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100318

Axiom
annotated source: somatic cell
annotated property: definition
annotated target: Any cell that is not a germ cell (Okada, 1998). During development, somatic cells differentiate into various types, but they do not persist beyond the lifespan of a single organism (Okada, 1998).
database_cross_reference: FlyBase:FBrf0101973

adult alimentary canal
type: Class
subclass of: alimentary canal
subclass of: Restriction
  on property: part of
  some values from: adult digestive system
definition: The entire adult anatomical structure through which food and its digestion products are ingested, digested and excreted. At its anterior and posterior ends this includes structures that are not foregut or hindgut.
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100322
in subset: cur

Axiom
annotated source: adult alimentary canal
annotated property: definition
annotated target: The entire adult anatomical structure through which food and its digestion products are ingested, digested and excreted. At its anterior and posterior ends this includes structures that are not foregut or hindgut.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

embryonic/larval alimentary canal
type: Class
subclass of: alimentary canal
subclass of: Restriction
  on property: part of
  some values from: larval digestive system
definition: The entire embryonic/larval anatomical structure through which food and its digestion products are ingested, digested and excreted. At its anterior and posterior ends this includes structures that are not foregut or hindgut.
contributor: https://orcid.org/0000-0002-7073-9172
date: 2010-11-04T02:13:05Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100323

Axiom
annotated source: embryonic/larval alimentary canal
annotated property: definition
annotated target: The entire embryonic/larval anatomical structure through which food and its digestion products are ingested, digested and excreted. At its anterior and posterior ends this includes structures that are not foregut or hindgut.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

adult glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: glial cell
subclass of: Restriction
  on property: part of
  some values from: adult nervous system
definition: Glial cell that is part of the adult. Subtypes generally tend to tile, minimizing contact with their glial neighbors and maximizing contact with their neuronal compartment (Kremer et al., 2017). They also do not seem to recognize particular neurons or neuropils; sometimes one glial cell has partial coverage of multiple units and multiple glial cells may tile across the same unit (Kremer et al., 2017).
contributor: Simon-Reeve-2162827703
date: 2011-04-19T01:31:16Z
database_cross_reference: VFB:FBbt_00100497
has OBO namespace: fly_anatomy.ontology
has related synonym: glia
id: FBbt:00100497

Axiom
annotated source: adult glial cell
annotated property: definition
annotated target: Glial cell that is part of the adult. Subtypes generally tend to tile, minimizing contact with their glial neighbors and maximizing contact with their neuronal compartment (Kremer et al., 2017). They also do not seem to recognize particular neurons or neuropils; sometimes one glial cell has partial coverage of multiple units and multiple glial cells may tile across the same unit (Kremer et al., 2017).
database_cross_reference: FlyBase:FBrf0206543
database_cross_reference: FlyBase:FBrf0214261
database_cross_reference: FlyBase:FBrf0234767

adult CNS glial cell
type: Class
equivalent class: Class
  intersection of: CNS glial cell
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: CNS glial cell
subclass of: adult glial cell
subclass of: Restriction
  on property: part of
  some values from: adult central nervous system
definition: Glial cell that is part of the adult central nervous system.
contributor: Simon-Reeve-2162827703
date: 2011-04-26T02:22:14Z
database_cross_reference: VFB:FBbt_00100499
has exact synonym: adult central nervous system glial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100499

Axiom
annotated source: adult CNS glial cell
annotated property: definition
annotated target: Glial cell that is part of the adult central nervous system.
database_cross_reference: FlyBase:FBrf0206543

adult brain surface glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: adult brain
  intersection of: Restriction
    on property: part of
    some values from: perineurium
subclass of: CNS surface glial cell
subclass of: adult surface glial cell
subclass of: adult CNS glial cell
subclass of: Restriction
  on property: part of
  some values from: adult brain
definition: Glial cell that is associated with the surface of the adult brain.
contributor: Simon-Reeve-2162827703
date: 2011-04-26T02:24:52Z
database_cross_reference: VFB:FBbt_00100500
has exact synonym: adult brain surface associated glial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100500

Axiom
annotated source: adult brain surface glial cell
annotated property: definition
annotated target: Glial cell that is associated with the surface of the adult brain.
database_cross_reference: FlyBase:FBrf0206543
database_cross_reference: FlyBase:FBrf0210316
database_cross_reference: FlyBase:FBrf0234767

adult brain cell body glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: adult brain cell body rind
subclass of: adult cell body glial cell
subclass of: Restriction
  on property: part of
  some values from: adult brain cell body glial mesh
definition: Glial cell of the adult that is associated with the cell body rind of the brain. They have multiple lamelliform processes that intercalate in between neurons and wrap neuronal cell bodies (Hartenstein, 2011). They also wrap neuronal processes as they travel across the cell body rind (Kremer et al., 2017).
contributor: Simon-Reeve-2162827703
date: 2011-04-26T02:25:30Z
database_cross_reference: VFB:FBbt_00100501
has exact synonym: adult brain CG
has exact synonym: adult brain cortex associated glial cell
has exact synonym: adult brain cortex glial cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100501

Axiom
annotated source: adult brain cell body glial cell
annotated property: definition
annotated target: Glial cell of the adult that is associated with the cell body rind of the brain. They have multiple lamelliform processes that intercalate in between neurons and wrap neuronal cell bodies (Hartenstein, 2011). They also wrap neuronal processes as they travel across the cell body rind (Kremer et al., 2017).
database_cross_reference: FlyBase:FBrf0206543
database_cross_reference: FlyBase:FBrf0214261
database_cross_reference: FlyBase:FBrf0224194
database_cross_reference: FlyBase:FBrf0234767

Axiom
annotated source: adult brain cell body glial cell
annotated property: hasExactSynonym
annotated target: adult brain CG
database_cross_reference: FlyBase:FBrf0234767

adult brain cell body glial mesh
type: Class
subclass of: BFO_0000040
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: adult brain cell body rind
subclass of: Restriction
  on property: composed primarily of
  some values from: adult brain cell body glial cell
definition: Mesh-like structure composed of glial cells found in the cell body rind (cortex) of the adult brain (Awasaki et al., 2008). It is composed of cell body glial cells that locally elaborate and enwrap neuronal cell bodies (Awasaki et al., 2008).
contributor: Simon-Reeve-2162827703
date: 2011-04-26T03:22:32Z
database_cross_reference: VFB:FBbt_00100503
has exact synonym: adult brain cortex glial mesh
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100503

Axiom
annotated source: adult brain cell body glial mesh
annotated property: definition
annotated target: Mesh-like structure composed of glial cells found in the cell body rind (cortex) of the adult brain (Awasaki et al., 2008). It is composed of cell body glial cells that locally elaborate and enwrap neuronal cell bodies (Awasaki et al., 2008).
database_cross_reference: FlyBase:FBrf0206543

adult brain perineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: adult brain
  intersection of: Restriction
    on property: part of
    some values from: perineurial glial sheath
subclass of: CNS perineurial glial cell
subclass of: adult perineurial glial cell
subclass of: adult brain surface glial cell
definition: Small, oblong-shaped glial cell that is part of the (outer) perineurial sheath layer on the surface of the adult brain. It is located on top of the basal glial cell layer that is composed of the subperineurial glial cells.
contributor: Simon-Reeve-2162827703
date: 2011-04-27T11:05:54Z
database_cross_reference: VFB:FBbt_00100506
has exact synonym: adult brain PNG
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100506
comment: The perineurial glial cells develop post-embryonically, in a non-GCM manner, and are thus likely to function only in the blood-brain-barrier of the adult (Edwards and Meinertzhagen, 2010).

Axiom
annotated source: adult brain perineurial glial cell
annotated property: definition
annotated target: Small, oblong-shaped glial cell that is part of the (outer) perineurial sheath layer on the surface of the adult brain. It is located on top of the basal glial cell layer that is composed of the subperineurial glial cells.
database_cross_reference: FlyBase:FBrf0206543
database_cross_reference: FlyBase:FBrf0210316

Axiom
annotated source: adult brain perineurial glial cell
annotated property: hasExactSynonym
annotated target: adult brain PNG
database_cross_reference: FlyBase:FBrf0234767

adult brain subperineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: adult brain
  intersection of: Restriction
    on property: part of
    some values from: subperineurial glial sheath
subclass of: CNS subperineurial glial cell
subclass of: adult subperineurial glial cell
subclass of: adult brain surface glial cell
definition: Glial cell of the subperineurial glial sheath in the adult brain. These cells are fairly uniform in morphology across the brain, having a large, square and thin shape, giving them a sheet-like appearance (Awasaki et al., 2008, Kremer et al., 2017). Some also have circular protrusions that cap neuronal cell bodies not fully enclosed by cell body glia (Kremer et al., 2017).
contributor: Simon-Reeve-2162827703
date: 2011-04-27T11:06:24Z
database_cross_reference: VFB:FBbt_00100507
has exact synonym: adult brain SPG
has exact synonym: adult brain subperineurial surface associated glial cell
has OBO namespace: fly_anatomy.ontology
has related synonym: adult brain basal glial cell
has related synonym: adult brain subperineurial glia
id: FBbt:00100507

Axiom
annotated source: adult brain subperineurial glial cell
annotated property: definition
annotated target: Glial cell of the subperineurial glial sheath in the adult brain. These cells are fairly uniform in morphology across the brain, having a large, square and thin shape, giving them a sheet-like appearance (Awasaki et al., 2008, Kremer et al., 2017). Some also have circular protrusions that cap neuronal cell bodies not fully enclosed by cell body glia (Kremer et al., 2017).
database_cross_reference: FlyBase:FBrf0206543
database_cross_reference: FlyBase:FBrf0210316

Axiom
annotated source: adult brain subperineurial glial cell
annotated property: hasExactSynonym
annotated target: adult brain SPG
database_cross_reference: FlyBase:FBrf0234767

Axiom
annotated source: adult brain subperineurial glial cell
annotated property: hasExactSynonym
annotated target: adult brain subperineurial surface associated glial cell
database_cross_reference: FlyBase:FBrf0206543

embryonic/larval CNS perineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: larval central nervous system
  intersection of: Restriction
    on property: part of
    some values from: perineurial glial sheath
subclass of: CNS perineurial glial cell
subclass of: embryonic/larval lateral glial cell
subclass of: embryonic/larval perineurial glial cell
subclass of: Restriction
  on property: part of
  some values from: larval central nervous system
definition: Glial cell of the perineurial glial sheath in the embryonic/larval CNS.
contributor: Simon-Reeve-2162827703
date: 2011-05-10T01:11:49Z
database_cross_reference: VFB:FBbt_00100510
has OBO namespace: fly_anatomy.ontology
has related synonym: embryonic/larval perineurial glial cell
id: FBbt:00100510
comment: The perineurial glial cells develop post-embryonically (Edwards and Meinertzhagen, 2010).

Axiom
annotated source: embryonic/larval CNS perineurial glial cell
annotated property: definition
annotated target: Glial cell of the perineurial glial sheath in the embryonic/larval CNS.
database_cross_reference: FlyBase:FBrf0210316
database_cross_reference: FlyBase:FBrf0214261

embryonic/larval PNS perineurial glial cell
type: Class
equivalent class: Class
  intersection of: glial cell
  intersection of: Restriction
    on property: part of
    some values from: larval peripheral nervous system
  intersection of: Restriction
    on property: part of
    some values from: perineurial glial sheath
subclass of: embryonic/larval lateral glial cell
subclass of: embryonic/larval perineurial glial cell
subclass of: PNS perineurial glial cell
subclass of: larval PNS glial cell
definition: Glial cell of the embryonic/larval peripheral nervous system that ensheathes axons and dendrites. The perineurial layer of glial cell lie on top of the inner, subperineurial glial cells (Banerjee et al., 2006).
contributor: Simon-Reeve-2162827703
date: 2011-05-10T01:51:31Z
database_cross_reference: VFB:FBbt_00100511
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100511

Axiom
annotated source: embryonic/larval PNS perineurial glial cell
annotated property: definition
annotated target: Glial cell of the embryonic/larval peripheral nervous system that ensheathes axons and dendrites. The perineurial layer of glial cell lie on top of the inner, subperineurial glial cells (Banerjee et al., 2006).
database_cross_reference: FlyBase:FBrf0191040
database_cross_reference: FlyBase:FBrf0214261
database_cross_reference: FlyBase:FBrf0229998

adult rectal sac
type: Class
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: adult posterior hindgut
definition: Broadly expanded, thin walled sac-like structure that tapers posteriorly to the narrower rectum proper terminating at the anus, at the posterior end of the adult hindgut.
contributor: Simon-Reeve-2162827703
date: 2011-07-26T03:57:28Z
has exact synonym: adult rectal ampulla
has exact synonym: rectal pouch
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100783

Axiom
annotated source: adult rectal sac
annotated property: definition
annotated target: Broadly expanded, thin walled sac-like structure that tapers posteriorly to the narrower rectum proper terminating at the anus, at the posterior end of the adult hindgut.
database_cross_reference: FlyBase:FBrf0007735
database_cross_reference: FlyBase:FBrf0075527

Axiom
annotated source: adult rectal sac
annotated property: hasExactSynonym
annotated target: adult rectal ampulla
database_cross_reference: FlyBase:FBrf0212594

Axiom
annotated source: adult rectal sac
annotated property: hasExactSynonym
annotated target: rectal pouch
database_cross_reference: FlyBase:FBrf0064792

adepithelial cell of leg disc
type: Class
equivalent class: Class
  intersection of: adepithelial cell
  intersection of: Restriction
    on property: continuous with
    some values from: leg disc
subclass of: adepithelial cell
subclass of: thoracic adult muscle precursor cell
subclass of: Restriction
  on property: part of
  some values from: larval thoracic segment
subclass of: Restriction
  on property: continuous with
  some values from: leg disc
definition: Adepithelial cell associated with a leg imaginal disc. This cell will give rise to the muscle cells of the adult leg (Broadie and Bate, 1991).
contributor: Simon-Reeve-2162827703
date: 2011-07-27T04:35:40Z
has exact synonym: adepithelial cell of ventral thoracic disc
has exact synonym: muscle leg precursor cell
has OBO namespace: fly_anatomy.ontology
id: FBbt:00100788

Axiom
annotated source: adepithelial cell of leg disc
annotated property: definition
annotated target: Adepithelial cell associated with a leg imaginal disc. This cell will give rise to the muscle cells of the adult leg (Broadie and Bate, 1991).
database_cross_reference: FlyBase:FBrf0053755
database_cross_reference: FlyBase:FBrf0093123

larval abdominal segment A2-7
type: Class
subclass of: larval abdominal segment A1-7
definition: One of the six larval segments, starting from the second anterior segment (counting from anterior to posterior). Larval segments 2-7 have identical musculature, gross tracheal morphology and sensory organ types and distribution.
contributor: https://orcid.org/0000-0001-5948-3092
date: 2013-01-14T05:25:32Z
has OBO namespace: fly_anatomy.ontology
id: FBbt:00110209

Axiom
annotated source: larval abdominal segment A2-7
annotated property: definition
annotated target: One of the six larval segments, starting from the second anterior segment (counting from anterior to posterior). Larval segments 2-7 have identical musculature, gross tracheal morphology and sensory organ types and distribution.
database_cross_reference: FlyBase:FBrf0089570

adult cerebral ganglion
type: Class
equivalent class: Class
  intersection of: supraesophageal ganglion
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: supraesophageal ganglion
subclass of: anterior ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: adult brain
subclass of: Restriction
  on property: develops from
  some values from: larval brain
definition: The supraesophageal neuropils of the adult brain located above, around and partially below the esophagus, including the optic lobes. It excludes the gnathal ganglion. Developmentally, it comprises three fused neuromeres: protocerebrum, deutocerebrum, and tritocerebrum.
contributor: https://orcid.org/0000-0001-5948-3092
date: 2013-10-08T17:05:57Z
database_cross_reference: UBERON:6110636
database_cross_reference: VFB:FBbt_00110636
has exact synonym: CRG
has OBO namespace: fly_anatomy.ontology
has related synonym: SPG
has related synonym: adult supraesophageal ganglion
has related synonym: brain
has related synonym: cerebrum
id: FBbt:00110636
in subset: BrainName
in subset: cur
comment: This term is related to what used to be called supraesophageal ganglion, and is now referred to as supraesophageal zone. The adult cerebral ganglion, together with the gnathal ganglia (GNG), denote regions that follow the segmental neuromeres of the brain (the 3 rostral and 3 caudal, respectively). These are distinguishable from supra- and subesophageal zones, as these refer to the neuropil masses above and below the esophagus and do not respect neuromere boundaries (Ito et al., 2014).

Axiom
annotated source: adult cerebral ganglion
annotated property: definition
annotated target: The supraesophageal neuropils of the adult brain located above, around and partially below the esophagus, including the optic lobes. It excludes the gnathal ganglion. Developmentally, it comprises three fused neuromeres: protocerebrum, deutocerebrum, and tritocerebrum.
database_cross_reference: FlyBase:FBrf0224194

Axiom
annotated source: adult cerebral ganglion
annotated property: hasExactSynonym
annotated target: CRG
database_cross_reference: FlyBase:FBrf0224194
has synonym type: BRAIN NAME ABV

adult subesophageal zone
type: Class
equivalent class: Class
  intersection of: subesophageal zone
  intersection of: Restriction
    on property: overlaps
    some values from: adult
subclass of: subesophageal zone
subclass of: Restriction
  on property: part of
  some values from: adult central brain
definition: Neuropil mass below the esophagus in the adult brain. It encompasses the gnathal ganglion, the prow and the saddle.
contributor: https://orcid.org/0000-0001-5948-3092
date: 2013-10-08T17:53:57Z
database_cross_reference: VFB:FBbt_00110639
has exact synonym: SEZ
has narrow synonym: SEG
has narrow synonym: SOG
has narrow synonym: adult subesophageal ganglion
has narrow synonym: adult suboesophageal ganglion
has OBO namespace: fly_anatomy.ontology
id: FBbt:00110639
in subset: BrainName
in subset: cur
comment: This term refers to what used to be called subesophageal ganglion. The new name, together with supraesophageal zone, refer to the brain tissue below and above the esophagus and do not respect neuromere boundaries. The terms cerebral ganglia (CRG) and gnathal ganglia (GNG), denote the segmental neuromeres of the brain (the 3 rostral and 3 caudal, respectively) (Ito et al., 2014). Sterne et al. (2021) - FBrf0251280 define the SEZ as comprising GNG + TR.

Axiom
annotated source: adult subesophageal zone
annotated property: definition
annotated target: Neuropil mass below the esophagus in the adult brain. It encompasses the gnathal ganglion, the prow and the saddle.
database_cross_reference: FlyBase:FBrf0224194

Axiom
annotated source: adult subesophageal zone
annotated property: hasExactSynonym
annotated target: SEZ
database_cross_reference: FlyBase:FBrf0224194
has synonym type: BRAIN NAME ABV

adult ventral nerve cord cell body rind
type: Class
subclass of: cell body rind of adult central nervous system
subclass of: Restriction
  on property: part of
  some values from: adult ventral nerve cord
definition: Superficial layer of the adult ventral nerve cord, composed of glia and the cell bodies of neurons (soma).
contributor: https://orcid.org/0000-0001-5948-3092
date: 2015-08-05T14:30:30Z
has broad synonym: cellular cortex
database_cross_reference: VFB:FBbt_00111082
has exact synonym: adult VNC cell body rind
has exact synonym: adult VNC cortex
has exact synonym: adult VNS cell body rind
has exact synonym: adult VNS cortex
has exact synonym: adult thoracico-abdominal ganglion cell body rind
has exact synonym: adult thoracico-abdominal ganglion cortex
has exact synonym: adult ventral nervous system cell body rind
has exact synonym: adult ventral nervous system cortex
has OBO namespace: fly_anatomy.ontology
id: FBbt:00111082
in subset: cur

Axiom
annotated source: adult ventral nerve cord cell body rind
annotated property: definition
annotated target: Superficial layer of the adult ventral nerve cord, composed of glia and the cell bodies of neurons (soma).
database_cross_reference: FlyBase:FBrf0007196
database_cross_reference: https://orcid.org/0000-0001-5948-3092

Axiom
annotated source: adult ventral nerve cord cell body rind
annotated property: hasBroadSynonym
annotated target: cellular cortex
database_cross_reference: FlyBase:FBrf0007196

cell body rind of larval ventral nerve cord
type: Class
subclass of: cell body rind region
subclass of: Restriction
  on property: part of
  some values from: larval ventral nerve cord
subclass of: Restriction
  on property: part of
  some values from: cell body rind of larval central nervous system
definition: Region of the larval cell body rind that overlies the neuropil of the ventral nerve cord.
contributor: https://orcid.org/0000-0001-5948-3092
date: 2015-10-29T11:43:24Z
database_cross_reference: VFB:FBbt_00111225
has exact synonym: cortex of ventral nerve cord
has OBO namespace: fly_anatomy.ontology
id: FBbt:00111225

Axiom
annotated source: cell body rind of larval ventral nerve cord
annotated property: definition
annotated target: Region of the larval cell body rind that overlies the neuropil of the ventral nerve cord.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

cell body rind of larval brain
type: Class
subclass of: cell body rind region
subclass of: Restriction
  on property: part of
  some values from: larval brain
subclass of: Restriction
  on property: part of
  some values from: cell body rind of larval central nervous system
definition: Region of the larval cell body rind that overlies the neuropil of the brain.
contributor: https://orcid.org/0000-0001-5948-3092
date: 2015-10-29T11:43:24Z
database_cross_reference: VFB:FBbt_00111226
has exact synonym: cortex of larval brain
has OBO namespace: fly_anatomy.ontology
id: FBbt:00111226

Axiom
annotated source: cell body rind of larval brain
annotated property: definition
annotated target: Region of the larval cell body rind that overlies the neuropil of the brain.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

prothoracic Keilin organ
type: Class
equivalent class: Class
  intersection of: Keilin organ
  intersection of: Restriction
    on property: part of
    some values from: larval prothoracic segment
subclass of: embryonic/larval prothoracic sensillum
subclass of: Keilin organ
subclass of: Restriction
  on property: part of
  some values from: larval prothoracic ventral sensory cluster
definition: Any Keilin organ (FBbt:00005198) that is part of some larval prothoracic segment (FBbt:00001743).
contributor: https://orcid.org/0000-0001-5948-3092
date: 2016-05-18T15:25:53Z
has broad synonym: sh A
database_cross_reference: VFB:FBbt_00111639
has exact synonym: prothoracic Keilin's organ
has OBO namespace: fly_anatomy.ontology
id: FBbt:00111639
in subset: cur

Axiom
annotated source: prothoracic Keilin organ
annotated property: definition
annotated target: Any Keilin organ (FBbt:00005198) that is part of some larval prothoracic segment (FBbt:00001743).
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: prothoracic Keilin organ
annotated property: hasBroadSynonym
annotated target: sh A
database_cross_reference: FlyBase:FBrf0034076

anterior ectoderm anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: Restriction
  on property: part of
  some values from: ectoderm anlage
subclass of: Restriction
  on property: develops into
  some values from: anterior ectoderm
definition: Anlage that develops into the anterior ectoderm. It is found anterior to the dorsal, lateral and ventral regions of the ectoderm anlage and posterior to the anterior endoderm anlage at the cellular blastoderm stage, prior to gastrulation (Stathopoulos and Newcomb, 2020).
has OBO namespace: fly_anatomy.ontology
id: FBbt:01000119
in subset: cur

Axiom
annotated source: anterior ectoderm anlage
annotated property: definition
annotated target: Anlage that develops into the anterior ectoderm. It is found anterior to the dorsal, lateral and ventral regions of the ectoderm anlage and posterior to the anterior endoderm anlage at the cellular blastoderm stage, prior to gastrulation (Stathopoulos and Newcomb, 2020).
database_cross_reference: FlyBase:FBrf0244630

posterior ectoderm anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: Restriction
  on property: part of
  some values from: ectoderm anlage
subclass of: Restriction
  on property: develops into
  some values from: posterior ectoderm
definition: Anlage that develops into the posterior ectoderm. It is found posterior to the dorsal, lateral and ventral regions of the ectoderm anlage and anterior to the posterior endoderm anlage at the cellular blastoderm stage, prior to gastrulation (Stathopoulos and Newcomb, 2020).
has OBO namespace: fly_anatomy.ontology
id: FBbt:01000122
in subset: cur

Axiom
annotated source: posterior ectoderm anlage
annotated property: definition
annotated target: Anlage that develops into the posterior ectoderm. It is found posterior to the dorsal, lateral and ventral regions of the ectoderm anlage and anterior to the posterior endoderm anlage at the cellular blastoderm stage, prior to gastrulation (Stathopoulos and Newcomb, 2020).
database_cross_reference: FlyBase:FBrf0244630

embryonic ventral trunk epidermis
type: Class
subclass of: ventral ectoderm derivative
subclass of: multicellular structure
subclass of: Restriction
  on property: part of
  some values from: embryonic ventral epidermis
subclass of: Restriction
  on property: develops from
  some values from: ventral trunk epidermis primordium
definition: The epidermis of the embryonic ventral trunk.
has OBO namespace: fly_anatomy.ontology
id: FBbt:01005747
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: embryonic ventral trunk epidermis
annotated property: definition
annotated target: The epidermis of the embryonic ventral trunk.
database_cross_reference: https://orcid.org/0000-0001-5948-3092

anatomical entity
type: Class
equivalent class: Class
  intersection of: CARO_0000000
  intersection of: Restriction
    on property: part of
    some values from: Drosophila melanogaster
subclass of: CARO_0000000
subclass of: Restriction
  on property: part of
  some values from: Drosophila melanogaster
definition: Anatomical entity which is part_of Drosophila melanogaster.
has alternative id: FBbt_root:00000000
database_cross_reference: UBERON:0001062
has OBO namespace: fly_anatomy.ontology
has related synonym: Drosophila
id: FBbt:10000000
in subset: EmbDevSlim
in subset: cur
in subset: larval OF

Axiom
annotated source: anatomical entity
annotated property: definition
annotated target: Anatomical entity which is part_of Drosophila melanogaster.
database_cross_reference: https://orcid.org/0000-0001-9114-8737

denticle field anlage
type: Class
subclass of: developing embryonic structure
subclass of: anlage
subclass of: ventral ectoderm derivative
subclass of: Restriction
  on property: part of
  some values from: late extended germ band embryo
subclass of: Restriction
  on property: develops from
  some values from: ventral epidermis primordium
subclass of: Restriction
  on property: develops into
  some values from: denticle field primordium
definition: A(n) anlage that develops into some denticle field primordium. It develops from some ventral epidermis primordium.
has OBO namespace: fly_anatomy.ontology
has related synonym: A DenBl
id: FBbt:10005326
in subset: EmbDevSlim
in subset: cur

Axiom
annotated source: denticle field anlage
annotated property: definition
annotated target: A(n) anlage that develops into some denticle field primordium. It develops from some ventral epidermis primordium.
database_cross_reference: FBC:Autogenerated

Axiom
annotated source: denticle field anlage
annotated property: hasRelatedSynonym
annotated target: A DenBl
database_cross_reference: https://orcid.org/0000-0002-7073-9172

FlyBase CV
type: Class
definition: FlyBase miscellaneous controlled vocabulary term.
has OBO namespace: FlyBase miscellaneous CV
id: FBcv:0000000

descriptor
type: Class
subclass of: FlyBase CV
definition: Term that describes an allele, balancer, group or publication.
has OBO namespace: FlyBase miscellaneous CV
id: FBcv:0000013
in subset: do not annotate

Axiom
annotated source: descriptor
annotated property: definition
annotated target: Term that describes an allele, balancer, group or publication.
database_cross_reference: FBC:MMC

dataset descriptor
type: Class
subclass of: descriptor
definition: Term that describes a dataset.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: FlyBase miscellaneous CV
id: FBcv:0003021

Axiom
annotated source: dataset descriptor
annotated property: definition
annotated target: Term that describes a dataset.
database_cross_reference: FBC:GD

dataset entity type
type: Class
subclass of: dataset descriptor
definition: Term that specifies the dataset component type.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: dataset_entity_type
id: FBcv:0003022

Axiom
annotated source: dataset entity type
annotated property: definition
annotated target: Term that specifies the dataset component type.
database_cross_reference: FBC:GD

project
type: Class
subclass of: dataset entity type
definition: A set of biological data from a single study. Corresponds to the NCBI bioproject, GEO series or SRA study.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: dataset_entity_type
id: FBcv:0003023

Axiom
annotated source: project
annotated property: definition
annotated target: A set of biological data from a single study. Corresponds to the NCBI bioproject, GEO series or SRA study.
database_cross_reference: FBC:GD

biosample
type: Class
subclass of: dataset entity type
definition: Biological source material characterized by an experiment.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: dataset_entity_type
id: FBcv:0003024

Axiom
annotated source: biosample
annotated property: definition
annotated target: Biological source material characterized by an experiment.
database_cross_reference: FBC:GD

assay
type: Class
subclass of: dataset entity type
definition: Quantitative or qualitative assessment of biological source material to measure some attribute.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: dataset_entity_type
id: FBcv:0003025

Axiom
annotated source: assay
annotated property: definition
annotated target: Quantitative or qualitative assessment of biological source material to measure some attribute.
database_cross_reference: FBC:GD

dataset data type
type: Class
subclass of: dataset descriptor
definition: The data type content of a dataset.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: FlyBase miscellaneous CV
id: FBcv:0003028

Axiom
annotated source: dataset data type
annotated property: definition
annotated target: The data type content of a dataset.
database_cross_reference: FBC:GD

assay type
type: Class
subclass of: dataset data type
definition: The type of assay as characterized by its data content.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: assay_type
id: FBcv:0003050

Axiom
annotated source: assay type
annotated property: definition
annotated target: The type of assay as characterized by its data content.
database_cross_reference: FBC:GD

RNA-Seq
type: Class
subclass of: assay type
definition: A quantitative method for mapping transcribed regions, in which complementary DNA fragments are subjected to high-throughput sequencing.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
database_cross_reference: EFO:0008896
has OBO namespace: assay_type
id: FBcv:0003068

Axiom
annotated source: RNA-Seq
annotated property: definition
annotated target: A quantitative method for mapping transcribed regions, in which complementary DNA fragments are subjected to high-throughput sequencing.
database_cross_reference: PMID:18451266

result type
type: Class
subclass of: dataset data type
definition: The type of result as characterized by its data content.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: result_type
id: FBcv:0003082

Axiom
annotated source: result type
annotated property: definition
annotated target: The type of result as characterized by its data content.
database_cross_reference: FBC:GD

analysis
type: Class
subclass of: result type
definition: A result that is produced from the detailed examination of data to come to some conclusion.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: result_type
id: FBcv:0003108

Axiom
annotated source: analysis
annotated property: definition
annotated target: A result that is produced from the detailed examination of data to come to some conclusion.
database_cross_reference: FBC:GD

dataset attribute
type: Class
subclass of: dataset descriptor
definition: A descriptor that describes some aspect of a dataset.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: FlyBase miscellaneous CV
id: FBcv:0003121

Axiom
annotated source: dataset attribute
annotated property: definition
annotated target: A descriptor that describes some aspect of a dataset.
database_cross_reference: FBC:GD

assay attribute
type: Class
subclass of: dataset attribute
definition: Some characteristic of an assay pertaining to the methods involved in processing the biological source material or generating the raw output data of the assay.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: assay_attribute
id: FBcv:0003175

Axiom
annotated source: assay attribute
annotated property: definition
annotated target: Some characteristic of an assay pertaining to the methods involved in processing the biological source material or generating the raw output data of the assay.
database_cross_reference: FBC:GD

assay method
type: Class
subclass of: assay attribute
definition: A method used to characterize the biological molecules isolated from a biosample.
contributor: http://orcid.org/0000-0001-5948-3092
date: 2016-02-24T19:19:21Z
has OBO namespace: assay_attribute
id: FBcv:0003208

Axiom
annotated source: assay method
annotated property: definition
annotated target: A method used to characterize the biological molecules isolated from a biosample.
database_cross_reference: FBC:GD

single-cell RNA-Seq
type: Class
subclass of: RNA-Seq
definition: A method for quantifying the transcriptome of individual cells, in which transcripts isolated from single cells are subjected to high-throughput sequencing and mapping to a reference genome.
contributor: http://orcid.org/0000-0002-6095-8718
date: 2021-07-26T12:18:07Z
database_cross_reference: EFO:0008913
database_cross_reference: OBI:0002631
has exact synonym: scRNA-Seq
has exact synonym: single-cell RNA sequencing assay
has OBO namespace: assay_type
id: FBcv:0009000

Axiom
annotated source: single-cell RNA-Seq
annotated property: definition
annotated target: A method for quantifying the transcriptome of individual cells, in which transcripts isolated from single cells are subjected to high-throughput sequencing and mapping to a reference genome.
database_cross_reference: PMID:28821273

Axiom
annotated source: single-cell RNA-Seq
annotated property: hasExactSynonym
annotated target: scRNA-Seq
database_cross_reference: PMID:32405060

single-nucleus RNA-Seq
type: Class
subclass of: single-cell RNA-Seq
definition: A method for quantifying the transcriptome of individual cells, in which transcripts isolated from single nuclei are subjected to high-throughput sequencing and mapping to a reference genome.
contributor: http://orcid.org/0000-0002-6095-8718
date: 2021-07-26T12:19:45Z
database_cross_reference: EFO:0009809
has exact synonym: single-nucleus RNA sequencing assay
has exact synonym: snRNA-Seq
has OBO namespace: assay_type
id: FBcv:0009001

Axiom
annotated source: single-nucleus RNA-Seq
annotated property: definition
annotated target: A method for quantifying the transcriptome of individual cells, in which transcripts isolated from single nuclei are subjected to high-throughput sequencing and mapping to a reference genome.
database_cross_reference: PMID:28821273

Axiom
annotated source: single-nucleus RNA-Seq
annotated property: hasExactSynonym
annotated target: snRNA-Seq
database_cross_reference: PMID:32405060

cell clustering analysis
type: Class
subclass of: analysis
definition: A result that groups individual cells into populations sharing a similar transcriptional profile.
contributor: http://orcid.org/0000-0002-6095-8718
date: 2021-07-26T12:21:05Z
has OBO namespace: result_type
id: FBcv:0009002

Axiom
annotated source: cell clustering analysis
annotated property: definition
annotated target: A result that groups individual cells into populations sharing a similar transcriptional profile.
database_cross_reference: PMID:28821273

transcriptional cell cluster
type: Class
subclass of: result type
definition: A result that represents a population of cells sharing a similar transcriptional profile.
contributor: http://orcid.org/0000-0002-6095-8718
date: 2021-07-26T12:22:16Z
has OBO namespace: result_type
id: FBcv:0009003

Axiom
annotated source: transcriptional cell cluster
annotated property: definition
annotated target: A result that represents a population of cells sharing a similar transcriptional profile.
database_cross_reference: PMID:28821273

single-cell library sequencing
type: Class
subclass of: assay method
definition: A method to prepare and sequence a library of cDNAs obtained from single cells.
contributor: http://orcid.org/0000-0002-6095-8718
date: 2021-07-26T13:40:26Z
has OBO namespace: assay_attribute
id: FBcv:0009005

Axiom
annotated source: single-cell library sequencing
annotated property: definition
annotated target: A method to prepare and sequence a library of cDNAs obtained from single cells.
database_cross_reference: FBC:DPG

10x sequencing
type: Class
subclass of: single-cell library sequencing
definition: A method that uses the Chromium platform from 10x Genomics to prepare and sequence a cDNA library.
contributor: http://orcid.org/0000-0002-6095-8718
date: 2021-07-26T13:45:06Z
has OBO namespace: assay_attribute
id: FBcv:0009008

Axiom
annotated source: 10x sequencing
annotated property: definition
annotated target: A method that uses the Chromium platform from 10x Genomics to prepare and sequence a cDNA library.
database_cross_reference: PMID:29126257

Drosophila life
type: Class
subclass of: BFO_0000003
definition: The life of an individual of the species Drosophila melanogaster, from fertilization to death.
has alternative id: FBdv_root:00000000
has exact synonym: Drosophila life cycle
has OBO namespace: FlyBase_development_CV
id: FBdv:00000000

Axiom
annotated source: Drosophila life
annotated property: definition
annotated target: The life of an individual of the species Drosophila melanogaster, from fertilization to death.
database_cross_reference: FBC:DOS

cleavage stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: fertilized egg stage
definition: Stage during which the nucleus of the fertilized egg performs 13 rapid divisions, prior to cellularization (Hartenstein, 1993; Campos-Ortega and Hartenstein, 1997). The first seven divisions are synchronous (Campos-Ortega and Hartenstein, 1997). During the course of the subsequent three divisions, most of the nuclei approach the surface and then divide asynchronously a further three times, bringing the total number of cells to around 5000 (Campos-Ortega and Hartenstein, 1997). This corresponds to embryonic stages 1-4 (Hartenstein, 1993).
has OBO namespace: FlyBase_development_CV
id: FBdv:00000054
comment: Temporal ordering number - 25.

Axiom
annotated source: cleavage stage
annotated property: definition
annotated target: Stage during which the nucleus of the fertilized egg performs 13 rapid divisions, prior to cellularization (Hartenstein, 1993; Campos-Ortega and Hartenstein, 1997). The first seven divisions are synchronous (Campos-Ortega and Hartenstein, 1997). During the course of the subsequent three divisions, most of the nuclei approach the surface and then divide asynchronously a further three times, bringing the total number of cells to around 5000 (Campos-Ortega and Hartenstein, 1997). This corresponds to embryonic stages 1-4 (Hartenstein, 1993).
database_cross_reference: FlyBase:FBrf0064803
database_cross_reference: FlyBase:FBrf0089570

late extended germ band stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 10
subclass of: Restriction
  on property: immediately preceded by
  some values from: early extended germ band stage
definition: A collective term for stages 11 and 12.
has OBO namespace: FlyBase_development_CV
id: FBdv:00004450
comment: Temporal ordering number - 300.

Axiom
annotated source: late extended germ band stage
annotated property: definition
annotated target: A collective term for stages 11 and 12.
database_cross_reference: FBC:DOS

oogenesis
type: Class
subclass of: developmental process
definition: The complete process of formation and maturation of an ovum or female gemate from a primordial female germ cell.
database_cross_reference: GO:0048477
has exact synonym: oogenesis stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00004886
comment: Temporal ordering number - 10000.

Axiom
annotated source: oogenesis
annotated property: definition
annotated target: The complete process of formation and maturation of an ovum or female gemate from a primordial female germ cell.
database_cross_reference: GO:0048477

developmental stage
type: Class
subclass of: BFO_0000003
definition: A temporal subdivision of a developmental process.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2009-10-01T05:56:56Z
has alternative id: FBdv:00007010
has OBO namespace: FlyBase_development_CV
id: FBdv:00005259

Axiom
annotated source: developmental stage
annotated property: definition
annotated target: A temporal subdivision of a developmental process.
database_cross_reference: FBC:DOS

oogenesis stage S1
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
definition: Earliest stage of ovarian cyst development - lasts while the 16 cell cyst is within the germarium (region 3).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005261
comment: Temporal ordering number - 10010.

Axiom
annotated source: oogenesis stage S1
annotated property: definition
annotated target: Earliest stage of ovarian cyst development - lasts while the 16 cell cyst is within the germarium (region 3).
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S2
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S1
definition: Oogenesis stage that begins when the cyst leaves the germarium (from this point the cyst is referred to as an egg chamber). During this stage, polyploidation of the nurse cells begins, they reach a ploidy of 8C, and follicle cells start to divide.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005262
comment: Temporal ordering number - 10020.

Axiom
annotated source: oogenesis stage S2
annotated property: definition
annotated target: Oogenesis stage that begins when the cyst leaves the germarium (from this point the cyst is referred to as an egg chamber). During this stage, polyploidation of the nurse cells begins, they reach a ploidy of 8C, and follicle cells start to divide.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S3
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S2
definition: Oogenesis stage that begins when the oocyte chromosomes condense into a karyosome attached to a distinctive spherical structure known as an endobody. The oocyte nucleolus disappears completely. During this stage, nurse cell ploidy reaches 16C.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005263
comment: Temporal ordering number - 10030.

Axiom
annotated source: oogenesis stage S3
annotated property: definition
annotated target: Oogenesis stage that begins when the oocyte chromosomes condense into a karyosome attached to a distinctive spherical structure known as an endobody. The oocyte nucleolus disappears completely. During this stage, nurse cell ploidy reaches 16C.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S4
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S3
definition: Oogenesis stage that begins when the nurse cells chromosomes become bulbous. Nurse cell chromosomes during this stage are polytene and reach a ploidy of 32C. The egg chamber is oval shaped.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005264
comment: Temporal ordering number - 10040.

Axiom
annotated source: oogenesis stage S4
annotated property: definition
annotated target: Oogenesis stage that begins when the nurse cells chromosomes become bulbous. Nurse cell chromosomes during this stage are polytene and reach a ploidy of 32C. The egg chamber is oval shaped.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S5
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S4
definition: Oogenesis stage that begins when nurse cell chromosomes are no longer bulbous - the association between homologs weakens so that these chromosomes no longer have a polytene structure. During this stage, posterior nurse cell nuclei have a higher ploidy (64C) than anterior ones.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005265
comment: Temporal ordering number - 10050.

Axiom
annotated source: oogenesis stage S5
annotated property: definition
annotated target: Oogenesis stage that begins when nurse cell chromosomes are no longer bulbous - the association between homologs weakens so that these chromosomes no longer have a polytene structure. During this stage, posterior nurse cell nuclei have a higher ploidy (64C) than anterior ones.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S6
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S5
definition: Oogenesis stage during which follicle cell division ceases.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005266
comment: Temporal ordering number - 10060.

Axiom
annotated source: oogenesis stage S6
annotated property: definition
annotated target: Oogenesis stage during which follicle cell division ceases.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S7
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S6
definition: Oogenesis stage during which polyploidation and enlargement of follicle cells begins. Nurse cell ploidy ranges from 256C (anterior) to 512C (posterior) and the egg chamber gains an elongated shape.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005267
comment: Temporal ordering number - 10070.

Axiom
annotated source: oogenesis stage S7
annotated property: definition
annotated target: Oogenesis stage during which polyploidation and enlargement of follicle cells begins. Nurse cell ploidy ranges from 256C (anterior) to 512C (posterior) and the egg chamber gains an elongated shape.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S8
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S7
definition: Oogenesis stage which begins when yolk first appears in the oocyte. Follicle cell migration over the oocyte begins during this stage (although mostly occurs during stage 9).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005268
comment: Temporal ordering number - 10080.

Axiom
annotated source: oogenesis stage S8
annotated property: definition
annotated target: Oogenesis stage which begins when yolk first appears in the oocyte. Follicle cell migration over the oocyte begins during this stage (although mostly occurs during stage 9).
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S9
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S8
definition: Oogenesis stage that begins when the border cells begin to migrate. During this stage: the oocyte is about 1/3 the length of the egg chamber with its nucleus located antero-dorsally; follicle cell migration results in an anterior to posterior gradient of follicle cell thickness with posterior cells being thicker (-> columnar) and posterior cells thinner ( -> squamous); border cell migration begins and ends; secretion of vitelline membrane begins.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005269
comment: Temporal ordering number - 10090.

Axiom
annotated source: oogenesis stage S9
annotated property: definition
annotated target: Oogenesis stage that begins when the border cells begin to migrate. During this stage: the oocyte is about 1/3 the length of the egg chamber with its nucleus located antero-dorsally; follicle cell migration results in an anterior to posterior gradient of follicle cell thickness with posterior cells being thicker (-> columnar) and posterior cells thinner ( -> squamous); border cell migration begins and ends; secretion of vitelline membrane begins.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S10
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S9
definition: Oogenesis stage that begins when all the oocyte associated follicular epithelium is columnar and all of the nurse cell associated follicular epithelium is completely squamous and ends with the beginning of nurse cell dumping.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005270
comment: Temporal ordering number - 10100.

Axiom
annotated source: oogenesis stage S10
annotated property: definition
annotated target: Oogenesis stage that begins when all the oocyte associated follicular epithelium is columnar and all of the nurse cell associated follicular epithelium is completely squamous and ends with the beginning of nurse cell dumping.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S10A
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S10
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S9
definition: Oogenesis stage which begins when all the oocyte associated follicular epithelium is columnar and all of the nurse cell associated follicular epithelium is completely squamous and ends when centripetal follicle migration begins. During this stage, the migrating border cells reach the oocyte. The oocyte is about 50% egg chamber length.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005271
comment: Temporal ordering number - 10110.

Axiom
annotated source: oogenesis stage S10A
annotated property: definition
annotated target: Oogenesis stage which begins when all the oocyte associated follicular epithelium is columnar and all of the nurse cell associated follicular epithelium is completely squamous and ends when centripetal follicle migration begins. During this stage, the migrating border cells reach the oocyte. The oocyte is about 50% egg chamber length.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074

oogenesis stage S10B
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S10
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S10A
definition: Oogenesis stage that begins when the centripetal follicle cells begin to migrate. As a result, the vitelline membrane extends into the opercular region. This stage ends when nurse cell dumping begins.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005272
comment: Temporal ordering number - 10120.

Axiom
annotated source: oogenesis stage S10B
annotated property: definition
annotated target: Oogenesis stage that begins when the centripetal follicle cells begin to migrate. As a result, the vitelline membrane extends into the opercular region. This stage ends when nurse cell dumping begins.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S11
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S10
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S10B
definition: Oogenesis stage that begins when nurse cell dumping begins and development of the wax layer begins. The dorsal appendages begin to form during this stage. This stage ends when dying nurse cells form an anterior cap to the oocyte.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005273
comment: Temporal ordering number - 10130.

Axiom
annotated source: oogenesis stage S11
annotated property: definition
annotated target: Oogenesis stage that begins when nurse cell dumping begins and development of the wax layer begins. The dorsal appendages begin to form during this stage. This stage ends when dying nurse cells form an anterior cap to the oocyte.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0043885
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S12
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S11
definition: Oogenesis stage that begins when dying nurse cells form an anterior cap to the oocyte. Shortly after this, nurse cell dumping and growth of the oocyte are complete. Elongation of the dorsal appendages and formation of the innermost chorionic layer and endochorion begins during this stage.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005274
comment: Temporal ordering number - 10160.

Axiom
annotated source: oogenesis stage S12
annotated property: definition
annotated target: Oogenesis stage that begins when dying nurse cells form an anterior cap to the oocyte. Shortly after this, nurse cell dumping and growth of the oocyte are complete. Elongation of the dorsal appendages and formation of the innermost chorionic layer and endochorion begins during this stage.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0043885
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S12A
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S12
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S11
definition: Innermost chorionic layer and endochorion begin to form in the anterior of the follicle.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005275
comment: Temporal ordering number - 10170.

Axiom
annotated source: oogenesis stage S12A
annotated property: definition
annotated target: Innermost chorionic layer and endochorion begin to form in the anterior of the follicle.
database_cross_reference: FlyBase:FBrf0043885

oogenesis stage S12B
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S12
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S12A
definition: Secretion of innermost chorionic layer and endochorion begins in the main follicle cells.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005276
comment: Temporal ordering number - 10180.

Axiom
annotated source: oogenesis stage S12B
annotated property: definition
annotated target: Secretion of innermost chorionic layer and endochorion begins in the main follicle cells.
database_cross_reference: FlyBase:FBrf0043885

oogenesis stage S12C
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S12
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S12B
definition: Formation of specialized endochorion structures in the anterior of the follicle: branches in the developing dorsal appendages; compact endochorion lacking the pillars seen in the rest of the follicle.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005277
comment: Temporal ordering number - 10190.

Axiom
annotated source: oogenesis stage S12C
annotated property: definition
annotated target: Formation of specialized endochorion structures in the anterior of the follicle: branches in the developing dorsal appendages; compact endochorion lacking the pillars seen in the rest of the follicle.
database_cross_reference: FlyBase:FBrf0021038

oogenesis stage S13
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S12
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S12C
definition: Oogenesis stage that begins when the micropyle begins to form. At the beginning of this stage, about 12-15 nurse cell nuclei remain at the anterior of the oocyte. By the end of this stage, none of these nuclei remain. Oocyte meiosis up to arrest at full metaphase I occurs during this stage.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005278
comment: Temporal ordering number - 10200.

Axiom
annotated source: oogenesis stage S13
annotated property: definition
annotated target: Oogenesis stage that begins when the micropyle begins to form. At the beginning of this stage, about 12-15 nurse cell nuclei remain at the anterior of the oocyte. By the end of this stage, none of these nuclei remain. Oocyte meiosis up to arrest at full metaphase I occurs during this stage.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0029744
database_cross_reference: FlyBase:FBrf0034074
database_cross_reference: FlyBase:FBrf0064777

oogenesis stage S13A
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S13
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S12C
definition: Oogenesis stage during which 12-15 nurse cell nuclei remain at the anterior of the oocyte. At this stage, the oocyte nucleus has reached its maximum volume and its chromosomes are compressed into a 5-7 micrometer karyosome.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005279
comment: Temporal ordering number - 10210. An alternative division of stage 13 into two sub-stages, A and B, has been defined on the basis of chorion development (see FBrf0043885). This ontology uses an alternative subdivision based on nurse cell nucleus number and oocyte meiosis, as the former at least, is easier to score than chorion ultrastructure.

Axiom
annotated source: oogenesis stage S13A
annotated property: definition
annotated target: Oogenesis stage during which 12-15 nurse cell nuclei remain at the anterior of the oocyte. At this stage, the oocyte nucleus has reached its maximum volume and its chromosomes are compressed into a 5-7 micrometer karyosome.
database_cross_reference: FlyBase:FBrf0029744

oogenesis stage S13B
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S13
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S13A
definition: Oogenesis stage during which 9-11 nurse cell nuclei remain at the anterior of the oocyte. During this stage, the nuclear membrane of the oocyte nucleus disappears, indicating the start of meiotic pro-metaphase.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005280
comment: Temporal ordering number - 10220. An alternative division of stage 13 into two sub-stages, A and B, has been defined on the basis of chorion development (see FBrf0043885). This ontology uses an alternative subdivision based on nurse cell nucleus number and oocyte meiosis, as the former at least, is easier to score than chorion ultrastructure.

Axiom
annotated source: oogenesis stage S13B
annotated property: definition
annotated target: Oogenesis stage during which 9-11 nurse cell nuclei remain at the anterior of the oocyte. During this stage, the nuclear membrane of the oocyte nucleus disappears, indicating the start of meiotic pro-metaphase.
database_cross_reference: FlyBase:FBrf0029744

oogenesis stage S13C
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S13
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S13B
definition: Oogenesis stage during which only 7-8 nurse cell nuclei remain at the anterior of the oocyte. At the beginning of this stage, oocyte chromosome bivalents separate from each other - indicating mid-prometaphase of oocyte meiosis.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005281
comment: Temporal ordering number - 10230.

Axiom
annotated source: oogenesis stage S13C
annotated property: definition
annotated target: Oogenesis stage during which only 7-8 nurse cell nuclei remain at the anterior of the oocyte. At the beginning of this stage, oocyte chromosome bivalents separate from each other - indicating mid-prometaphase of oocyte meiosis.
database_cross_reference: FlyBase:FBrf0029744

oogenesis stage S13D
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S13
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S13C
definition: Oogenesis stage during which only 5-6 nurse cell nuclei remain at the anterior of the oocyte. The oocyte nucleus is in late prometaphase:the bivalents arrange themselves in on the equatorial plane of the spindle; homologous centromeres are pulled towards the poles.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005282
comment: Temporal ordering number - 10240.

Axiom
annotated source: oogenesis stage S13D
annotated property: definition
annotated target: Oogenesis stage during which only 5-6 nurse cell nuclei remain at the anterior of the oocyte. The oocyte nucleus is in late prometaphase:the bivalents arrange themselves in on the equatorial plane of the spindle; homologous centromeres are pulled towards the poles.
database_cross_reference: FlyBase:FBrf0029744

oogenesis stage S14
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S13
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S13D
definition: The last stage of oogenesis. This stage begins when no nurse cell nuclei remain at the anterior of the egg (chamber). Exochorion formation and secretion occurs during this stage. The dorsal appendages complete their elongation and the follicle cells die.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005283
comment: Temporal ordering number - 10260.

Axiom
annotated source: oogenesis stage S14
annotated property: definition
annotated target: The last stage of oogenesis. This stage begins when no nurse cell nuclei remain at the anterior of the egg (chamber). Exochorion formation and secretion occurs during this stage. The dorsal appendages complete their elongation and the follicle cells die.
database_cross_reference: FlyBase:FBrf0043885

oogenesis stage S14A
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S14
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S13D
definition: Secretion and formation of the outer endochorionic network by throughout the follicle. Crystallization of the innermost chorionic layer of the main body follicle cells.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005284
comment: Temporal ordering number - 10270.

Axiom
annotated source: oogenesis stage S14A
annotated property: definition
annotated target: Secretion and formation of the outer endochorionic network by throughout the follicle. Crystallization of the innermost chorionic layer of the main body follicle cells.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0043885

oogenesis stage S14B
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: oogenesis stage S14
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S14A
definition: Secretion of the exochorion begins and ends.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005285
comment: Temporal ordering number - 10280.

Axiom
annotated source: oogenesis stage S14B
annotated property: definition
annotated target: Secretion of the exochorion begins and ends.
database_cross_reference: FlyBase:FBrf0021038
database_cross_reference: FlyBase:FBrf0043885

egg stage
type: Class
subclass of: developmental stage
definition: The stage of the Drosophila life-cycle from maturation of an egg to the end of fertilization. At the beginning of this stage, the nucleus is arrested in meiotic metaphase I. The completion of meiosis and the start of protein synthesis are triggered by ovulation. If the female has already mated, fertilization begins during meiosis.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005286
comment: Temporal ordering number - 10290.

Axiom
annotated source: egg stage
annotated property: definition
annotated target: The stage of the Drosophila life-cycle from maturation of an egg to the end of fertilization. At the beginning of this stage, the nucleus is arrested in meiotic metaphase I. The completion of meiosis and the start of protein synthesis are triggered by ovulation. If the female has already mated, fertilization begins during meiosis.
database_cross_reference: FlyBase:FBrf0064779

unfertilized egg stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: egg stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S14
subclass of: Restriction
  on property: immediately preceded by
  some values from: oogenesis stage S14B
definition: Developmental stage that starts with ovulation, at the end of oogenesis, until the egg is fertilized by a sperm.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005287
comment: Temporal ordering number - 10300.

Axiom
annotated source: unfertilized egg stage
annotated property: definition
annotated target: Developmental stage that starts with ovulation, at the end of oogenesis, until the egg is fertilized by a sperm.
database_cross_reference: FlyBase:FBrf0158848

fertilized egg stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: egg stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: unfertilized egg stage
definition: Developmental stage that starts with sperm entry until the first mitotic division of the zygote.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005288
comment: Temporal ordering number - 10.

Axiom
annotated source: fertilized egg stage
annotated property: definition
annotated target: Developmental stage that starts with sperm entry until the first mitotic division of the zygote.
database_cross_reference: FlyBase:FBrf0229233

embryonic stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: unfertilized egg stage
subclass of: Restriction
  on property: immediately precedes
  some values from: larval stage
subclass of: Restriction
  on property: immediately precedes
  some values from: first instar larval stage
definition: Life stage that begins with a fertilized egg, and finishes with hatching at the end of embryonic stage 17 (Campos-Ortega and Hartenstein, 1997).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005289
comment: Temporal ordering number - 20.

Axiom
annotated source: embryonic stage
annotated property: definition
annotated target: Life stage that begins with a fertilized egg, and finishes with hatching at the end of embryonic stage 17 (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0089570

pre-blastoderm stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: cleavage stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: fertilized egg stage
definition: Stage prior to the formation of the syncitial blastoderm, including the first 9 cell divisions and the migration of nuclei to the periphery (cortex) of the embryo (Foe and Alberts, 1983; Jaeger et al., 2012). This lasts from fertilization to embryonic stage 3 (Campos-Ortega and Hartenstein, 1997).
has exact synonym: pre-blastoderm
has OBO namespace: FlyBase_development_CV
id: FBdv:00005290
comment: Temporal ordering number - 30.

Axiom
annotated source: pre-blastoderm stage
annotated property: definition
annotated target: Stage prior to the formation of the syncitial blastoderm, including the first 9 cell divisions and the migration of nuclei to the periphery (cortex) of the embryo (Foe and Alberts, 1983; Jaeger et al., 2012). This lasts from fertilization to embryonic stage 3 (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0039741
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0220623

embryonic stage 1
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pre-blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: fertilized egg stage
definition: The embryonic stage that lasts from the end of fertilization to the end of the second nuclear division. Duration at 25 degrees C: approximately 25 minutes (0-25 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005291
comment: Temporal ordering number - 40.

Axiom
annotated source: embryonic stage 1
annotated property: definition
annotated target: The embryonic stage that lasts from the end of fertilization to the end of the second nuclear division. Duration at 25 degrees C: approximately 25 minutes (0-25 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0064779
database_cross_reference: FlyBase:FBrf0089570

embryonic cycle 1
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 1
subclass of: Restriction
  on property: immediately preceded by
  some values from: fertilized egg stage
definition: The first mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005292
comment: Temporal ordering number - 50.

Axiom
annotated source: embryonic cycle 1
annotated property: definition
annotated target: The first mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic stage 2
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pre-blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 1
definition: Nuclear divisions 3-8. The egg cytoplasm contracts producing a clear separation from the vitelline membrane and empty spaces at the anterior and posterior. The cleavage nuclei migrate towards the periphery. Duration at 25 degrees C approximately 40 minutes (25-65 minutes AEL).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005293
comment: Temporal ordering number - 70.

Axiom
annotated source: embryonic stage 2
annotated property: definition
annotated target: Nuclear divisions 3-8. The egg cytoplasm contracts producing a clear separation from the vitelline membrane and empty spaces at the anterior and posterior. The cleavage nuclei migrate towards the periphery. Duration at 25 degrees C approximately 40 minutes (25-65 minutes AEL).
database_cross_reference: FlyBase:FBrf0089570

embryonic cycle 2
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 1
definition: The second mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005294
comment: Temporal ordering number - 60.

Axiom
annotated source: embryonic cycle 2
annotated property: definition
annotated target: The second mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic cycle 3
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 1
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 2
definition: The third mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005295
comment: Temporal ordering number - 80.

Axiom
annotated source: embryonic cycle 3
annotated property: definition
annotated target: The third mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic cycle 4
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 3
definition: The fourth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005296
comment: Temporal ordering number - 90.

Axiom
annotated source: embryonic cycle 4
annotated property: definition
annotated target: The fourth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic cycle 5
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 4
definition: The fifth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005297
comment: Temporal ordering number - 100.

Axiom
annotated source: embryonic cycle 5
annotated property: definition
annotated target: The fifth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic cycle 6
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 5
definition: The sixth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005298
comment: Temporal ordering number - 110.

Axiom
annotated source: embryonic cycle 6
annotated property: definition
annotated target: The sixth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic cycle 7
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 6
definition: The seventh mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005299
comment: Temporal ordering number - 120.

Axiom
annotated source: embryonic cycle 7
annotated property: definition
annotated target: The seventh mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic cycle 8
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 7
definition: The eighth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005300
comment: Temporal ordering number - 130.

Axiom
annotated source: embryonic cycle 8
annotated property: definition
annotated target: The eighth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

embryonic stage 3
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pre-blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 8
definition: Nuclear division 9. The cleavage nuclei complete their migration to the periphery. Polar buds form at the posterior pole and divide once. Duration at 25 degrees C: approximately 15 minutes (65-80 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005301
comment: Temporal ordering number - 140.

Axiom
annotated source: embryonic stage 3
annotated property: definition
annotated target: Nuclear division 9. The cleavage nuclei complete their migration to the periphery. Polar buds form at the posterior pole and divide once. Duration at 25 degrees C: approximately 15 minutes (65-80 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic cycle 9
type: Class
subclass of: embryonic cycle
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 3
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 2
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 8
definition: The ninth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005302
comment: Temporal ordering number - 150.

Axiom
annotated source: embryonic cycle 9
annotated property: definition
annotated target: The ninth mitotic cell cycle of embryogenesis. This occurs synchronously across the embryo.
database_cross_reference: FlyBase:FBrf0049535

blastoderm stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pre-blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 3
definition: Stage during which most of the nuclei are arranged as a monolayer at the cortex (periphery) of the embryo (Foe and Alberts, 1983; Jaeger et al., 2012). It begins shortly after completion of the ninth cleavage division and lasts until the onset of gastrulation, including cleavage cycles 10-14A (Foe and Alberts, 1983; Jaeger et al., 2012). This corresponds to embryonic stages 4 (syncitial blastoderm stage) and 5 (cellular blastoderm stage) (Campos-Ortega and Hartenstein, 1997).
has exact synonym: blastoderm
has OBO namespace: FlyBase_development_CV
id: FBdv:00005304
comment: Temporal ordering number - 160.

Axiom
annotated source: blastoderm stage
annotated property: definition
annotated target: Stage during which most of the nuclei are arranged as a monolayer at the cortex (periphery) of the embryo (Foe and Alberts, 1983; Jaeger et al., 2012). It begins shortly after completion of the ninth cleavage division and lasts until the onset of gastrulation, including cleavage cycles 10-14A (Foe and Alberts, 1983; Jaeger et al., 2012). This corresponds to embryonic stages 4 (syncitial blastoderm stage) and 5 (cellular blastoderm stage) (Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0039741
database_cross_reference: FlyBase:FBrf0089570
database_cross_reference: FlyBase:FBrf0220623

embryonic stage 4
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pre-blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 3
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic cycle 9
definition: Nuclear division 10-13. Polar buds divide twice and become tightly grouped at the posterior pole by the end of this stage. Nuclei visible at the rim of the embryo. Stage 4 ends with the beginning of cellularization. Duration at 25 degrees C: approximately 50 minutes (80-130 minutes after egg laying).
has exact synonym: syncytial blastoderm stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005306
comment: Temporal ordering number - 170.

Axiom
annotated source: embryonic stage 4
annotated property: definition
annotated target: Nuclear division 10-13. Polar buds divide twice and become tightly grouped at the posterior pole by the end of this stage. Nuclei visible at the rim of the embryo. Stage 4 ends with the beginning of cellularization. Duration at 25 degrees C: approximately 50 minutes (80-130 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

Axiom
annotated source: embryonic stage 4
annotated property: hasExactSynonym
annotated target: syncytial blastoderm stage
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 5
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: cleavage stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 4
definition: Cellularization. Stage 5 begins when cellularization starts. Near the end of this stage the pole cells begin to migrate dorsally and ventral midline cells acquire an irregular, wavy appearance. Stage 5 ends when ventral furrow formation becomes apparent. Duration at 25 degrees: approximately 40 minutes (130-170 minutes after egg laying).
has exact synonym: cellular blastoderm stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005311
comment: Temporal ordering number - 210.

Axiom
annotated source: embryonic stage 5
annotated property: definition
annotated target: Cellularization. Stage 5 begins when cellularization starts. Near the end of this stage the pole cells begin to migrate dorsally and ventral midline cells acquire an irregular, wavy appearance. Stage 5 ends when ventral furrow formation becomes apparent. Duration at 25 degrees: approximately 40 minutes (130-170 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

Axiom
annotated source: embryonic stage 5
annotated property: hasExactSynonym
annotated target: cellular blastoderm stage
database_cross_reference: FlyBase:FBrf0089570

gastrula stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 5
definition: Stage during which gastrulation occurs. During this stage, cells from the polar caps and the mid-ventral part of the blastoderm invaginate and ultimately generate the germ layers (Hartenstein, 1993). This encompasses embryonic stages 6-8 (Hartenstein, 1993).
has exact synonym: gastrula
has exact synonym: gastrulation stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005317
comment: Temporal ordering number - 220.

Axiom
annotated source: gastrula stage
annotated property: definition
annotated target: Stage during which gastrulation occurs. During this stage, cells from the polar caps and the mid-ventral part of the blastoderm invaginate and ultimately generate the germ layers (Hartenstein, 1993). This encompasses embryonic stages 6-8 (Hartenstein, 1993).
database_cross_reference: FlyBase:FBrf0064803

embryonic stage 6
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: gastrula stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: blastoderm stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 5
definition: Stage 6 begins when the ventral furrow becomes apparent, an event which is followed rapidly by the formation of the cephalic furrow. Stage 6 ends when the pole cells have adopted a dorsal (horizontal) position at the posterior. Duration at 25 degrees C: approximately 10 minutes (170-180 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005318
comment: Temporal ordering number - 230.

Axiom
annotated source: embryonic stage 6
annotated property: definition
annotated target: Stage 6 begins when the ventral furrow becomes apparent, an event which is followed rapidly by the formation of the cephalic furrow. Stage 6 ends when the pole cells have adopted a dorsal (horizontal) position at the posterior. Duration at 25 degrees C: approximately 10 minutes (170-180 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 7
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: gastrula stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 6
definition: Stage 7 begins when the pole cells have adopted a dorsal (horizontal) position at the posterior. Invagination of the anterior and posterior midgut and hindgut follows. The 'discoid plate' that carries the pole cells forms a pocket. Transverse furrows (dorsal folds) form on the dorsal surface. This stage ends when the anterior wall of the amnioproctodeal invagination starts moving anteriorly and the pole cells are no longer visible externally. Duration at 25 degrees C: approximately 10 minutes (180-190 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005319
comment: Temporal ordering number - 240.

Axiom
annotated source: embryonic stage 7
annotated property: definition
annotated target: Stage 7 begins when the pole cells have adopted a dorsal (horizontal) position at the posterior. Invagination of the anterior and posterior midgut and hindgut follows. The 'discoid plate' that carries the pole cells forms a pocket. Transverse furrows (dorsal folds) form on the dorsal surface. This stage ends when the anterior wall of the amnioproctodeal invagination starts moving anteriorly and the pole cells are no longer visible externally. Duration at 25 degrees C: approximately 10 minutes (180-190 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

extended germ band stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: gastrula stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 8
definition: Stages during which the germ band is extended - 9-12.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005321
comment: Temporal ordering number - 260.

Axiom
annotated source: extended germ band stage
annotated property: definition
annotated target: Stages during which the germ band is extended - 9-12.
database_cross_reference: FBC:DOS
database_cross_reference: FlyBase:FBrf0229323

embryonic stage 8
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: gastrula stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 7
definition: Stage 8 starts with the rapid phase of germ band extension and ends with the beginning of mesodermal segmentation. By the end of this stage germ band extension has progressed to the point where the proctodeal opening is at about 60% egg length and the dorsal folds (transverse furrows) are no longer visible. Duration at 25 degrees C: approximately 30 minutes (190-220 minutes after egg laying).
has exact synonym: rapidly extending germ band stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005322
comment: Temporal ordering number - 250.

Axiom
annotated source: embryonic stage 8
annotated property: definition
annotated target: Stage 8 starts with the rapid phase of germ band extension and ends with the beginning of mesodermal segmentation. By the end of this stage germ band extension has progressed to the point where the proctodeal opening is at about 60% egg length and the dorsal folds (transverse furrows) are no longer visible. Duration at 25 degrees C: approximately 30 minutes (190-220 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 9
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: early extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: gastrula stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 8
definition: Stage 9 begins when mesodermal segmentation becomes (transiently) visible, and ends with the appearance of the stomodeal invagination slightly ventral to the anterior pole. Duration at 25 degrees C: approximately 40 minutes (220-260 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005323
comment: Temporal ordering number - 280.

Axiom
annotated source: embryonic stage 9
annotated property: definition
annotated target: Stage 9 begins when mesodermal segmentation becomes (transiently) visible, and ends with the appearance of the stomodeal invagination slightly ventral to the anterior pole. Duration at 25 degrees C: approximately 40 minutes (220-260 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 10
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: early extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 9
definition: Stage 10 begins with the appearance of the stomodeal invagination, slightly ventral to the anterior pole. Periodic furrows appear in the embryonic epidermis around the middle of the stage. The germ band continues to extend, reaching its maximum extent of 75% egg length towards the end of the stage. The end of the stage is marked by the beginning of invagination of the tracheal placodes. Duration at 25 degrees : approximately 60 minutes (260-320 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005324
comment: Temporal ordering number - 290.

Axiom
annotated source: embryonic stage 10
annotated property: definition
annotated target: Stage 10 begins with the appearance of the stomodeal invagination, slightly ventral to the anterior pole. Periodic furrows appear in the embryonic epidermis around the middle of the stage. The germ band continues to extend, reaching its maximum extent of 75% egg length towards the end of the stage. The end of the stage is marked by the beginning of invagination of the tracheal placodes. Duration at 25 degrees : approximately 60 minutes (260-320 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 11
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: late extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 10
subclass of: Restriction
  on property: immediately preceded by
  some values from: early extended germ band stage
definition: Stage 11 begins with the invagination of the tracheal placodes. Para-segmental furrow form and segment boundary furrows become deep folds. Within the head, gnathal protuberances become apparent. The end of this stage is signaled by the appearance of a distinct cleft at the posterior pole of the embryo, which becomes detached from the vitelline membrane. This marks the beginning of germ-band retraction. Duration at 25 degrees C: approximately 120 minutes (320-440 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005325
comment: Temporal ordering number - 310.

Axiom
annotated source: embryonic stage 11
annotated property: definition
annotated target: Stage 11 begins with the invagination of the tracheal placodes. Para-segmental furrow form and segment boundary furrows become deep folds. Within the head, gnathal protuberances become apparent. The end of this stage is signaled by the appearance of a distinct cleft at the posterior pole of the embryo, which becomes detached from the vitelline membrane. This marks the beginning of germ-band retraction. Duration at 25 degrees C: approximately 120 minutes (320-440 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 12
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: late extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 11
definition: Germ band retraction. Stage 12 begins when germ-band retraction starts and ends when this process is complete so that the prospective anal plate occupies the posterior pole. During this stage the posterior and anterior midgut primordia meet and fuse and the tracheal pits fuse to form the tracheal tree. Duration at 25 degrees C: approximately 120 minutes (440-560 minutes after egg laying).
has exact synonym: retracting germ band stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005327
comment: Temporal ordering number - 320.

Axiom
annotated source: embryonic stage 12
annotated property: definition
annotated target: Germ band retraction. Stage 12 begins when germ-band retraction starts and ends when this process is complete so that the prospective anal plate occupies the posterior pole. During this stage the posterior and anterior midgut primordia meet and fuse and the tracheal pits fuse to form the tracheal tree. Duration at 25 degrees C: approximately 120 minutes (440-560 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 13
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: dorsal closure stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: late extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 12
definition: Stage 13 begins at the completion of germ-band retraction, when the prospective anal plate occupy the posterior pole. The dorsal ridge becomes apparent externally; the clypeolabrum retracts, leaving a triangular shaped gap at the anterior pole; the labium moves to the ventral midline. This stage ends when head involution begins. Duration at 25 degrees C: Approximately 60 minutes (560-620 minutes after egg laying).
has exact synonym: contracted germ band stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005328
comment: Temporal ordering number - 340.

Axiom
annotated source: embryonic stage 13
annotated property: definition
annotated target: Stage 13 begins at the completion of germ-band retraction, when the prospective anal plate occupy the posterior pole. The dorsal ridge becomes apparent externally; the clypeolabrum retracts, leaving a triangular shaped gap at the anterior pole; the labium moves to the ventral midline. This stage ends when head involution begins. Duration at 25 degrees C: Approximately 60 minutes (560-620 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 14
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: dorsal closure stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 13
definition: Stage 14 begins with the initiation of head involution. Closure of the midgut around the yolk and dorsal closure continue. Dorsal closure is 80% complete by the end of this stage. This stage ends with the appearance of the second midgut constriction. Duration at 25 degrees C: approximately 60 minutes (620-680 minutes after egg laying).
has exact synonym: head involution stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005330
comment: Temporal ordering number - 350.

Axiom
annotated source: embryonic stage 14
annotated property: definition
annotated target: Stage 14 begins with the initiation of head involution. Closure of the midgut around the yolk and dorsal closure continue. Dorsal closure is 80% complete by the end of this stage. This stage ends with the appearance of the second midgut constriction. Duration at 25 degrees C: approximately 60 minutes (620-680 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

dorsal closure stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: late extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 12
definition: Stage following germ band retraction, during which dorsal closure happens (Hartenstein, 1993). Dorsal closure occurs by extension of the dorsal epidermal primordium on either side, leading to fusion at the dorsal midline (Campos-Ortega and Hartenstein, 1997). This corresponds to embryonic stages 13-15 (Hartenstein, 1993; Campos-Ortega and Hartenstein, 1997).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005331
comment: Temporal ordering number - 330.

Axiom
annotated source: dorsal closure stage
annotated property: definition
annotated target: Stage following germ band retraction, during which dorsal closure happens (Hartenstein, 1993). Dorsal closure occurs by extension of the dorsal epidermal primordium on either side, leading to fusion at the dorsal midline (Campos-Ortega and Hartenstein, 1997). This corresponds to embryonic stages 13-15 (Hartenstein, 1993; Campos-Ortega and Hartenstein, 1997).
database_cross_reference: FlyBase:FBrf0064803
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 15
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: dorsal closure stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 14
definition: Stage 15 begins with the appearance of the second midgut constriction. During this stage the 1st and 3rd midgut constrictions form, dorsal closure is completed, and epidermal segmentation is accomplished. This stage ends when the intersegmental grooves can be distinguished at mid-dorsal level. Duration at 25 degrees C: approximately 100 minutes (680-780 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005332
comment: Temporal ordering number - 360.

Axiom
annotated source: embryonic stage 15
annotated property: definition
annotated target: Stage 15 begins with the appearance of the second midgut constriction. During this stage the 1st and 3rd midgut constrictions form, dorsal closure is completed, and epidermal segmentation is accomplished. This stage ends when the intersegmental grooves can be distinguished at mid-dorsal level. Duration at 25 degrees C: approximately 100 minutes (680-780 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

late embryonic stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: dorsal closure stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 15
definition: Embryonic stages 16-17.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005333
comment: Temporal ordering number - 370.

Axiom
annotated source: late embryonic stage
annotated property: definition
annotated target: Embryonic stages 16-17.
database_cross_reference: FBC:DOS

embryonic stage 16
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: late embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: dorsal closure stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 15
definition: Stage 16 begins when the intersegmental grooves can be distinguished at mid-dorsal level, and ends when the dorsal ridge (frontal sac) has overgrown the tip of the clypeolabrum, which is thereby enclosed in the atrium. During this stage the ventral cord retracts to about 60% egg length. Duration at 25 degrees C: approximately 180 minutes (780-960 minutes after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005334
comment: Temporal ordering number - 380.

Axiom
annotated source: embryonic stage 16
annotated property: definition
annotated target: Stage 16 begins when the intersegmental grooves can be distinguished at mid-dorsal level, and ends when the dorsal ridge (frontal sac) has overgrown the tip of the clypeolabrum, which is thereby enclosed in the atrium. During this stage the ventral cord retracts to about 60% egg length. Duration at 25 degrees C: approximately 180 minutes (780-960 minutes after egg laying).
database_cross_reference: FlyBase:FBrf0089570

embryonic stage 17
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: late embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 16
definition: Stage 17 begins when the dorsal ridge (frontal sac) has overgrown the tip of the clypeolabrum, which is thereby enclosed in the atrium. It lasts until hatching of the embryo (approximately 24 hours after egg laying), during which time much terminal differentiation occurs, the tracheal tree fills with air, so becoming completely visible, and the ventral cord continues to retract. Duration at 25 degrees C: approximately 8 hours (16-24 hours after egg laying).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005335
comment: Temporal ordering number - 390.

Axiom
annotated source: embryonic stage 17
annotated property: definition
annotated target: Stage 17 begins when the dorsal ridge (frontal sac) has overgrown the tip of the clypeolabrum, which is thereby enclosed in the atrium. It lasts until hatching of the embryo (approximately 24 hours after egg laying), during which time much terminal differentiation occurs, the tracheal tree fills with air, so becoming completely visible, and the ventral cord continues to retract. Duration at 25 degrees C: approximately 8 hours (16-24 hours after egg laying).
database_cross_reference: FlyBase:FBrf0089570

larval stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 17
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 17(iv)
subclass of: Restriction
  on property: immediately precedes
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately precedes
  some values from: P-stage
definition: The stage of the Drosophila life-cycle from hatching to the beginning of puparium formation.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005336
comment: Temporal ordering number - 400.

Axiom
annotated source: larval stage
annotated property: definition
annotated target: The stage of the Drosophila life-cycle from hatching to the beginning of puparium formation.
database_cross_reference: FBC:DOS

first instar larval stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: substage of
  some values from: larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: late embryonic stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 17
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 17(iv)
subclass of: Restriction
  on property: immediately precedes
  some values from: second instar larval stage
definition: The first larval instar begins at hatching and ends at the first larval molt. Anterior spiracles are not yet present; posterior spiracles have two openings each. Salivary glands are very small and all cells are uniform in size. Mouth hooks typically have one tooth. Duration at 25 degrees C: approximately 25 hours (24-49 hours after egg laying; 0-25 hours after hatching).
database_cross_reference: UBERON:8000000
has exact synonym: L1
has exact synonym: first instar larva
has OBO namespace: FlyBase_development_CV
id: FBdv:00005337
comment: Temporal ordering number - 410.

Axiom
annotated source: first instar larval stage
annotated property: definition
annotated target: The first larval instar begins at hatching and ends at the first larval molt. Anterior spiracles are not yet present; posterior spiracles have two openings each. Salivary glands are very small and all cells are uniform in size. Mouth hooks typically have one tooth. Duration at 25 degrees C: approximately 25 hours (24-49 hours after egg laying; 0-25 hours after hatching).
database_cross_reference: FlyBase:FBrf0007733

second instar larval stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: substage of
  some values from: larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: first instar larval stage
subclass of: Restriction
  on property: immediately precedes
  some values from: third instar larval stage
definition: The second larval instar begins at the first larval molt and ends at the second larval molt. Larvae are actively feeding and crawling in the food. Distinct anterior spiracles are present as enlargements at the end of the tracheal trunk, but not open to the outside; posterior spiracles have three openings each, and four groups of small unbranched hairs. The salivary glands extend to the first abdominal segment, and have cells that are uniform in size. Mouth hooks typically have two or three teeth. Duration at 25 degrees C: approximately 23 hours (49-72 hours after egg laying; 25-48 hours after hatching).
database_cross_reference: UBERON:8000001
has exact synonym: L2
has exact synonym: second instar larva
has OBO namespace: FlyBase_development_CV
id: FBdv:00005338
comment: Temporal ordering number - 420.

Axiom
annotated source: second instar larval stage
annotated property: definition
annotated target: The second larval instar begins at the first larval molt and ends at the second larval molt. Larvae are actively feeding and crawling in the food. Distinct anterior spiracles are present as enlargements at the end of the tracheal trunk, but not open to the outside; posterior spiracles have three openings each, and four groups of small unbranched hairs. The salivary glands extend to the first abdominal segment, and have cells that are uniform in size. Mouth hooks typically have two or three teeth. Duration at 25 degrees C: approximately 23 hours (49-72 hours after egg laying; 25-48 hours after hatching).
database_cross_reference: FlyBase:FBrf0007733

third instar larval stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: substage of
  some values from: larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: second instar larval stage
subclass of: Restriction
  on property: immediately precedes
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately precedes
  some values from: P-stage
definition: The third larval instar begins at the second larval molt and ends at puparium formation. Anterior spiracles are open to the outside; posterior spiracles have three openings each, and four groups of large branched hairs. The salivary glands extend to the second abdominal segment, with cells larger in the posterior than in the anterior of the gland. Mouth hooks typically have 9-12 teeth. About 24 hours before pupariation (at 25 degree C), larvae stop feeding and climb away from their food. Duration at 25 degrees C: approximately 48 hours (72-120 hours after egg laying; 48-96 hours after hatching).
database_cross_reference: UBERON:8000002
has exact synonym: L3
has OBO namespace: FlyBase_development_CV
has related synonym: third instar larva
id: FBdv:00005339
comment: Temporal ordering number - 430.

Axiom
annotated source: third instar larval stage
annotated property: definition
annotated target: The third larval instar begins at the second larval molt and ends at puparium formation. Anterior spiracles are open to the outside; posterior spiracles have three openings each, and four groups of large branched hairs. The salivary glands extend to the second abdominal segment, with cells larger in the posterior than in the anterior of the gland. Mouth hooks typically have 9-12 teeth. About 24 hours before pupariation (at 25 degree C), larvae stop feeding and climb away from their food. Duration at 25 degrees C: approximately 48 hours (72-120 hours after egg laying; 48-96 hours after hatching).
database_cross_reference: FlyBase:FBrf0007733

early third instar larval stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: second instar larval stage
definition: Third instar larva prior to the wandering stage (approximately the first 24 hours of the third instar larval stage under standard conditions at 25'C.).
contributor: http://orcid.org/0000-0002-7073-9172
date: 2008-11-13T11:51:56Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00005340
comment: Temporal ordering number - 440.

Axiom
annotated source: early third instar larval stage
annotated property: definition
annotated target: Third instar larva prior to the wandering stage (approximately the first 24 hours of the third instar larval stage under standard conditions at 25'C.).
database_cross_reference: FlyBase:FBrf0049147

wandering third instar larval stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: late third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: early third instar larval stage
definition: Stage of the third larval instar during which the larva wanders out of the food and climbs. Under optimum conditions at 25'C, this occurs approximately 24 hours after the start of the third instar larval stage.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2008-11-13T11:55:46Z
has broad synonym: late third instar
has broad synonym: post-feeding larva
has OBO namespace: FlyBase_development_CV
id: FBdv:00005341
comment: Temporal ordering number - 460.

Axiom
annotated source: wandering third instar larval stage
annotated property: definition
annotated target: Stage of the third larval instar during which the larva wanders out of the food and climbs. Under optimum conditions at 25'C, this occurs approximately 24 hours after the start of the third instar larval stage.
database_cross_reference: FlyBase:FBrf0049147

prepupal stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: substage of
  some values from: P-stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar larval stage L2
subclass of: Restriction
  on property: immediately preceded by
  some values from: late third instar larval stage
subclass of: Restriction
  on property: immediately precedes
  some values from: pupal stage
definition: The prepupal stage begins at puparium formation and ends when larval/pupal apolysis is complete, as indicated by the completion of imaginal head sac eversion and the expulsion of the oral armature of the larva. Duration at 25 degrees C: approximately 12 hours. (120-132.2 hours after egg laying; 0-12.2 hours after puparium formation).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005342
comment: Temporal ordering number - 500.

Axiom
annotated source: prepupal stage
annotated property: definition
annotated target: The prepupal stage begins at puparium formation and ends when larval/pupal apolysis is complete, as indicated by the completion of imaginal head sac eversion and the expulsion of the oral armature of the larva. Duration at 25 degrees C: approximately 12 hours. (120-132.2 hours after egg laying; 0-12.2 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

prepupal stage P1
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar larval stage L2
subclass of: Restriction
  on property: immediately preceded by
  some values from: late third instar larval stage
definition: Extends from puparium formation through tanning of the pupal cuticle. Posterior spiracles and ridge between anterior spiracles tan orange. Wriggling stops completely. Puparium becomes brown to the unaided eye. Duration at 25 degrees C: approximately 20 minutes. (120-120.3 hours after egg laying; 0-0.3 hours after puparium formation).
has exact synonym: pupal stage P1
has exact synonym: puparium formation
has exact synonym: white puparium stage
has narrow synonym: pupal stage P0
has narrow synonym: white prepupa
has OBO namespace: FlyBase_development_CV
id: FBdv:00005343
comment: Temporal ordering number - 510.

Axiom
annotated source: prepupal stage P1
annotated property: definition
annotated target: Extends from puparium formation through tanning of the pupal cuticle. Posterior spiracles and ridge between anterior spiracles tan orange. Wriggling stops completely. Puparium becomes brown to the unaided eye. Duration at 25 degrees C: approximately 20 minutes. (120-120.3 hours after egg laying; 0-0.3 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: prepupal stage P1
annotated property: hasExactSynonym
annotated target: puparium formation
database_cross_reference: FlyBase:FBrf0036849

Axiom
annotated source: prepupal stage P1
annotated property: hasExactSynonym
annotated target: white puparium stage
database_cross_reference: FlyBase:FBrf0036849

Axiom
annotated source: prepupal stage P1
annotated property: hasNarrowSynonym
annotated target: pupal stage P0
database_cross_reference: FlyBase:FBrf0036849

Axiom
annotated source: prepupal stage P1
annotated property: hasNarrowSynonym
annotated target: white prepupa
database_cross_reference: FlyBase:FBrf0036849

prepupal stage P2
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P1
definition: Male gonads become less distinct. Oral armature stops moving permanently. Dorsal medial abdominal contractions stop. Gas bubble becomes visible within abdomen. Duration at 25 degrees C: approximately 100 minutes. (120.3-122 hours after egg laying; 0.3-2 hours after puparium formation).
has exact synonym: brown puparium stage
has exact synonym: pupal stage P2
has OBO namespace: FlyBase_development_CV
id: FBdv:00005344
comment: Temporal ordering number - 520.

Axiom
annotated source: prepupal stage P2
annotated property: definition
annotated target: Male gonads become less distinct. Oral armature stops moving permanently. Dorsal medial abdominal contractions stop. Gas bubble becomes visible within abdomen. Duration at 25 degrees C: approximately 100 minutes. (120.3-122 hours after egg laying; 0.3-2 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: prepupal stage P2
annotated property: hasExactSynonym
annotated target: brown puparium stage
database_cross_reference: FlyBase:FBrf0036849

prepupal stage P3
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P2
definition: Ridge of the operculum becomes distinct. Puparium begins to separate from underlying epidermis. Becomes positively buoyant. Duration at 25 degrees C: approximately 4 hours, 45 minutes. (122-126.75 hours after egg laying; 2-6.75 hours after puparium formation).
has exact synonym: bubble prepupa stage
has exact synonym: pupal stage P3
has OBO namespace: FlyBase_development_CV
id: FBdv:00005345
comment: Temporal ordering number - 530.

Axiom
annotated source: prepupal stage P3
annotated property: definition
annotated target: Ridge of the operculum becomes distinct. Puparium begins to separate from underlying epidermis. Becomes positively buoyant. Duration at 25 degrees C: approximately 4 hours, 45 minutes. (122-126.75 hours after egg laying; 2-6.75 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: prepupal stage P3
annotated property: hasExactSynonym
annotated target: bubble prepupa stage
database_cross_reference: FlyBase:FBrf0036849

prepupal stage P4
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P3
definition: Prepupal stage P4 begins as the lateral trunk trachea become obscured and ends when the imaginal head sac is everted and the oral armature of the larva is expelled. Duration at 25 degrees C: approximately 5 hours, 30 minutes. (126.75-132.2 hours after egg laying; 6.75-12.2 hours after puparium formation).
has exact synonym: cryptocephalic pupa
has exact synonym: pupal stage P4
has OBO namespace: FlyBase_development_CV
id: FBdv:00005346
comment: Temporal ordering number - 540.

Axiom
annotated source: prepupal stage P4
annotated property: definition
annotated target: Prepupal stage P4 begins as the lateral trunk trachea become obscured and ends when the imaginal head sac is everted and the oral armature of the larva is expelled. Duration at 25 degrees C: approximately 5 hours, 30 minutes. (126.75-132.2 hours after egg laying; 6.75-12.2 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: prepupal stage P4
annotated property: hasExactSynonym
annotated target: cryptocephalic pupa
database_cross_reference: FlyBase:FBrf0036849

prepupal stage P4(i)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: prepupal stage P4
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P3
definition: Lateral trunk tracheae become obscured. Dorsal medial abdominal contractions occur. Everted leg and wing discs become visible. Bubble appears in posterior of puparium, displacing the pupa anteriorly; abdominal bubble disappears. Duration at 25 degrees C: approximately 5 hours, 15 minutes. (126.75-132 hours after egg laying; 6.75-12 hours after puparium formation).
has exact synonym: buoyant stage
has exact synonym: pupal stage P4(i)
has OBO namespace: FlyBase_development_CV
id: FBdv:00005347
comment: Temporal ordering number - 550.

Axiom
annotated source: prepupal stage P4(i)
annotated property: definition
annotated target: Lateral trunk tracheae become obscured. Dorsal medial abdominal contractions occur. Everted leg and wing discs become visible. Bubble appears in posterior of puparium, displacing the pupa anteriorly; abdominal bubble disappears. Duration at 25 degrees C: approximately 5 hours, 15 minutes. (126.75-132 hours after egg laying; 6.75-12 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: prepupal stage P4(i)
annotated property: hasExactSynonym
annotated target: buoyant stage
database_cross_reference: FlyBase:FBrf0036849

prepupal stage P4(ii)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: prepupal stage P4
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P4(i)
definition: Bubble is displaced to anterior end of the puparium, and pupa withdraws to the posterior end. Imaginal head sac is everted and the oral armature of the larva is expelled. Duration at 25 degrees C: approximately 12 minutes. (132-132.2 hours after egg laying; 12-12.2 hours after puparium formation).
has exact synonym: moving bubble stage
has exact synonym: pupal stage P4(ii)
has OBO namespace: FlyBase_development_CV
id: FBdv:00005348
comment: Temporal ordering number - 560.

Axiom
annotated source: prepupal stage P4(ii)
annotated property: definition
annotated target: Bubble is displaced to anterior end of the puparium, and pupa withdraws to the posterior end. Imaginal head sac is everted and the oral armature of the larva is expelled. Duration at 25 degrees C: approximately 12 minutes. (132-132.2 hours after egg laying; 12-12.2 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: prepupal stage P4(ii)
annotated property: hasExactSynonym
annotated target: moving bubble stage
database_cross_reference: FlyBase:FBrf0036849

pupal stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: substage of
  some values from: P-stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately precedes
  some values from: pharate adult stage
definition: The pupal stage starts once larval/pupal apolysis is complete as indicated by the expulsion of the larval armature. Early in this stage, the legs and wings reach full extension along the abdomen. The stage ends when the pupal cuticle separates from the underlying epidermis (pupal/adult apolysis), and the eye cup becomes yellow at its periphery. Duration at 25 degrees C: approximately 32 hours. (132.2-164.3 hours after egg laying; 12.2-44.3 hours after puparium formation).
has exact synonym: phanerocephalic pupa
has OBO namespace: FlyBase_development_CV
id: FBdv:00005349
comment: Temporal ordering number - 570. DISAMBIGUATION: In Drosophila lab vernacular, the term 'pupal stage' is often used to refer to the entire period from formation of the puparium to eclosion. However, this does not correspond to the standard usage of 'pupal stage' for Cyclorrhaphous flies (for discussion see: FBrf0087128). Briefly: formation of the puparium (hardening of the larval cuticle) marks the beginning of the pre-pupal stage. The pupal stage begins following pupal/larval apolysis - detachment of the larval epidermis from the puparium. In Drosophila, the outward sign of the completion of apolysis is the eversion of the head and expulsion of the larval mouthparts (FBrf0036849). We use P-stage to refer to the stage from pupariation to eclosion, and restrict pupal stage to its standard usage.

Axiom
annotated source: pupal stage
annotated property: definition
annotated target: The pupal stage starts once larval/pupal apolysis is complete as indicated by the expulsion of the larval armature. Early in this stage, the legs and wings reach full extension along the abdomen. The stage ends when the pupal cuticle separates from the underlying epidermis (pupal/adult apolysis), and the eye cup becomes yellow at its periphery. Duration at 25 degrees C: approximately 32 hours. (132.2-164.3 hours after egg laying; 12.2-44.3 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pupal stage
annotated property: hasExactSynonym
annotated target: phanerocephalic pupa
database_cross_reference: FlyBase:FBrf0036849

pupal stage P5
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P4
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P4(ii)
definition: Pupal stage P5 starts when the legs and wings reach full extension along the abdomen and ends as the Malpighian tubules become prominent and green. Duration at 25 degrees C: approximately 6 hours, 30 minutes. (132.2-138.7 hours after egg laying; 12.2-18.7 hours after puparium formation).
has OBO namespace: FlyBase_development_CV
id: FBdv:00005350
comment: Temporal ordering number - 580.

Axiom
annotated source: pupal stage P5
annotated property: definition
annotated target: Pupal stage P5 starts when the legs and wings reach full extension along the abdomen and ends as the Malpighian tubules become prominent and green. Duration at 25 degrees C: approximately 6 hours, 30 minutes. (132.2-138.7 hours after egg laying; 12.2-18.7 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

pupal stage P5(i)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pupal stage P5
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P4
subclass of: Restriction
  on property: immediately preceded by
  some values from: prepupal stage P4(ii)
definition: Legs and wings reach full extension along abdomen. Enlarged initial segments of anterior pair Malpighian tubules move from thorax into abdomen. Translucent patch that lacks adhering fat body cells becomes discernible in the middle of the eye region. Pair of white Malpighian tubules becomes visible dorsally in the abdomen. Duration at 25 degrees C: approximately 66 minutes. (132.2-133.3 hours after egg laying; 12.2-13.3 hours after puparium formation).
has exact synonym: Malpighian tubules migrating
has OBO namespace: FlyBase_development_CV
id: FBdv:00005351
comment: Temporal ordering number - 590.

Axiom
annotated source: pupal stage P5(i)
annotated property: definition
annotated target: Legs and wings reach full extension along abdomen. Enlarged initial segments of anterior pair Malpighian tubules move from thorax into abdomen. Translucent patch that lacks adhering fat body cells becomes discernible in the middle of the eye region. Pair of white Malpighian tubules becomes visible dorsally in the abdomen. Duration at 25 degrees C: approximately 66 minutes. (132.2-133.3 hours after egg laying; 12.2-13.3 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pupal stage P5(i)
annotated property: hasExactSynonym
annotated target: Malpighian tubules migrating
database_cross_reference: FlyBase:FBrf0036849

pupal stage P5(ii)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pupal stage P5
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage P5(i)
definition: Malpighian tubules become prominent and green. Duration at 25 degrees C: approximately 5 hours, 25 minutes. (133.3-138.7 hours after egg laying; 13.3-18.7 hours after puparium formation).
has exact synonym: white Malpighian tubules stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005352
comment: Temporal ordering number - 600.

Axiom
annotated source: pupal stage P5(ii)
annotated property: definition
annotated target: Malpighian tubules become prominent and green. Duration at 25 degrees C: approximately 5 hours, 25 minutes. (133.3-138.7 hours after egg laying; 13.3-18.7 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pupal stage P5(ii)
annotated property: hasExactSynonym
annotated target: white Malpighian tubules stage
database_cross_reference: FlyBase:FBrf0036849

pupal stage P6
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage P5
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage P5(ii)
definition: Dark green 'yellow body' appears between the anterior ends of the two Malpighian tubule segments, mid-dorsally at the anterior of the abdomen. Duration at 25 degrees C: approximately 13 hours, 45 minutes. (138.7-152.4 hours after egg laying; 18.7-32.4 hours after puparium formation).
has exact synonym: green Malpighian tubules stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005353
comment: Temporal ordering number - 610.

Axiom
annotated source: pupal stage P6
annotated property: definition
annotated target: Dark green 'yellow body' appears between the anterior ends of the two Malpighian tubule segments, mid-dorsally at the anterior of the abdomen. Duration at 25 degrees C: approximately 13 hours, 45 minutes. (138.7-152.4 hours after egg laying; 18.7-32.4 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pupal stage P6
annotated property: hasExactSynonym
annotated target: green Malpighian tubules stage
database_cross_reference: FlyBase:FBrf0036849

pupal stage P7
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage P6
definition: The 'yellow body' moves back between the Malpighian tubules. The transparent pupal cuticle separates from the underlying epidermis. Eye cup becomes yellow at its perimeter. Duration at 25 degrees C: approximately 12 hours. (152.4-164.3 hours after egg laying; 32.4-44.3 hours after puparium formation).
has exact synonym: yellow body stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005354
comment: Temporal ordering number - 620.

Axiom
annotated source: pupal stage P7
annotated property: definition
annotated target: The 'yellow body' moves back between the Malpighian tubules. The transparent pupal cuticle separates from the underlying epidermis. Eye cup becomes yellow at its perimeter. Duration at 25 degrees C: approximately 12 hours. (152.4-164.3 hours after egg laying; 32.4-44.3 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pupal stage P7
annotated property: hasExactSynonym
annotated target: yellow body stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P8
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage P7
definition: Pale yellow pigmentation spreads inwards across the eye. Eye color becomes bright yellow, then changes to amber. Duration at 25 degrees C: approximately 12 hours 20 minutes. (164.3-176.6 hours after egg laying; 44.3-56.6 hours after puparium formation).
has exact synonym: pupal stage P8
has exact synonym: yellow-eyed stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005355
comment: Temporal ordering number - 630.

Axiom
annotated source: pharate adult stage P8
annotated property: definition
annotated target: Pale yellow pigmentation spreads inwards across the eye. Eye color becomes bright yellow, then changes to amber. Duration at 25 degrees C: approximately 12 hours 20 minutes. (164.3-176.6 hours after egg laying; 44.3-56.6 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P8
annotated property: hasExactSynonym
annotated target: yellow-eyed stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P9
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P8
definition: Eye color darkens to deep amber, then becomes pale pink. Duration at 25 degrees C: approximately 18 hours. (176.6-194.5 hours after egg laying; 56.6-74.5 hours after puparium formation).
has exact synonym: amber-eyed stage
has exact synonym: pupal stage P9
has OBO namespace: FlyBase_development_CV
id: FBdv:00005356
comment: Temporal ordering number - 640.

Axiom
annotated source: pharate adult stage P9
annotated property: definition
annotated target: Eye color darkens to deep amber, then becomes pale pink. Duration at 25 degrees C: approximately 18 hours. (176.6-194.5 hours after egg laying; 56.6-74.5 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P9
annotated property: hasExactSynonym
annotated target: amber-eyed stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P10
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P9
definition: Eyes become bright red. Orbital and ocellar bristles and vibrissae darken. Duration at 25 degrees C: approximately 6 minutes. (194.5-194.6 hours after egg laying; 74.5-74.6 hours after puparium formation).
has exact synonym: pupal stage P10
has exact synonym: red-eye bald stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005357
comment: Temporal ordering number - 650.

Axiom
annotated source: pharate adult stage P10
annotated property: definition
annotated target: Eyes become bright red. Orbital and ocellar bristles and vibrissae darken. Duration at 25 degrees C: approximately 6 minutes. (194.5-194.6 hours after egg laying; 74.5-74.6 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P10
annotated property: hasExactSynonym
annotated target: red-eye bald stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P11
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P10
definition: Thoracic bristles become visible, and the tips of the wings turn grey. Duration at 25 degrees C: approximately 2 hours. (194.6-196.6 hours after egg laying; 74.6-76.6 hours after puparium formation).
has exact synonym: pupal stage P11
has OBO namespace: FlyBase_development_CV
id: FBdv:00005358
comment: Temporal ordering number - 660.

Axiom
annotated source: pharate adult stage P11
annotated property: definition
annotated target: Thoracic bristles become visible, and the tips of the wings turn grey. Duration at 25 degrees C: approximately 2 hours. (194.6-196.6 hours after egg laying; 74.6-76.6 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

pharate adult stage P11(i)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage P11
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P10
definition: Dorsal thoracic microchaetes and macrochaetes become visible. Duration at 25 degrees C: approximately 80 minutes (194.6-195.5 hours after egg laying; 74.6-75.9 hours after puparium formation).
has exact synonym: head bristles stage
has exact synonym: pupal stage P11(i)
has OBO namespace: FlyBase_development_CV
id: FBdv:00005359
comment: Temporal ordering number - 670.

Axiom
annotated source: pharate adult stage P11(i)
annotated property: definition
annotated target: Dorsal thoracic microchaetes and macrochaetes become visible. Duration at 25 degrees C: approximately 80 minutes (194.6-195.5 hours after egg laying; 74.6-75.9 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P11(i)
annotated property: hasExactSynonym
annotated target: head bristles stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P11(ii)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage P11
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P11(i)
definition: Tips of folded wings become grey. Duration at 25 degrees C: approximately 45 minutes (195.5-196.6 hours after egg laying; 75.9-76.6 hours after puparium formation).
has exact synonym: pupal stage P11(ii)
has exact synonym: thoracic bristles stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005360
comment: Temporal ordering number - 680.

Axiom
annotated source: pharate adult stage P11(ii)
annotated property: definition
annotated target: Tips of folded wings become grey. Duration at 25 degrees C: approximately 45 minutes (195.5-196.6 hours after egg laying; 75.9-76.6 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P11(ii)
annotated property: hasExactSynonym
annotated target: thoracic bristles stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P12
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P11
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P11(ii)
definition: Pharate adult stage P12 begins as the abdominal tergite bristles become visible, and ends as the wings darken to black. Duration at 25 degrees C: approximately 2 hours. (196.6-198.6 hours after egg laying; 76.6-78.6 hours after puparium formation).
has exact synonym: pupal stage P12
has OBO namespace: FlyBase_development_CV
id: FBdv:00005361
comment: Temporal ordering number - 690.

Axiom
annotated source: pharate adult stage P12
annotated property: definition
annotated target: Pharate adult stage P12 begins as the abdominal tergite bristles become visible, and ends as the wings darken to black. Duration at 25 degrees C: approximately 2 hours. (196.6-198.6 hours after egg laying; 76.6-78.6 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

pharate adult stage P12(i)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage P12
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P11
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P11(ii)
definition: Bristles of the abdominal tergites become visible, and the wings become grey. Duration at 25 degrees C: approximately 55 minutes. (196.6-197.5 hours after egg laying; 76.6-77.5 hours after puparium formation).
has exact synonym: pupal stage P12(i)
has exact synonym: wing tips grey stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005362
comment: Temporal ordering number - 700.

Axiom
annotated source: pharate adult stage P12(i)
annotated property: definition
annotated target: Bristles of the abdominal tergites become visible, and the wings become grey. Duration at 25 degrees C: approximately 55 minutes. (196.6-197.5 hours after egg laying; 76.6-77.5 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P12(i)
annotated property: hasExactSynonym
annotated target: wing tips grey stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P12(ii)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage P12
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P12(i)
definition: Sex combs darken in males. Wings darken to black. Duration at 25 degrees C: approximately 65 minutes. (197.5-198.6 hours after egg laying; 77.5-78.6 hours after puparium formation).
has exact synonym: pupal stage P12(ii)
has exact synonym: wings grey stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005363
comment: Temporal ordering number - 710.

Axiom
annotated source: pharate adult stage P12(ii)
annotated property: definition
annotated target: Sex combs darken in males. Wings darken to black. Duration at 25 degrees C: approximately 65 minutes. (197.5-198.6 hours after egg laying; 77.5-78.6 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P12(ii)
annotated property: hasExactSynonym
annotated target: wings grey stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P13
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P12
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P12(ii)
definition: Tarsal bristles darken and claws become black. Duration at 25 degrees C: approximately 3 hours, 20 minutes. (198.6-201.9 hours after egg laying; 78.6-81.9 hours after puparium formation).
has exact synonym: pupal stage P13
has exact synonym: wings black stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00005364
comment: Temporal ordering number - 720.

Axiom
annotated source: pharate adult stage P13
annotated property: definition
annotated target: Tarsal bristles darken and claws become black. Duration at 25 degrees C: approximately 3 hours, 20 minutes. (198.6-201.9 hours after egg laying; 78.6-81.9 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P13
annotated property: hasExactSynonym
annotated target: wings black stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P14
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P13
definition: The meconium appears dorsally at the posterior tip of the abdomen. Duration at 25 degrees C: approximately 9 hours, 30 minutes (201.9-211.5 hours after egg laying; 81.9-91.5 hours after puparium formation).
has exact synonym: mature bristles stage
has exact synonym: pupal stage P14
has OBO namespace: FlyBase_development_CV
id: FBdv:00005365
comment: Temporal ordering number - 730.

Axiom
annotated source: pharate adult stage P14
annotated property: definition
annotated target: The meconium appears dorsally at the posterior tip of the abdomen. Duration at 25 degrees C: approximately 9 hours, 30 minutes (201.9-211.5 hours after egg laying; 81.9-91.5 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P14
annotated property: hasExactSynonym
annotated target: mature bristles stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P15
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P14
definition: Pharate adult stage P15 begins with the tanning of the tergites and ends with eclosion. Duration at 25 degrees C: approximately 8 hours, 30 minutes. (211.5-220 hours after egg laying; 91.5-100 hours after puparium formation).
has exact synonym: pupal stage P15
has OBO namespace: FlyBase_development_CV
id: FBdv:00005366
comment: Temporal ordering number - 740.

Axiom
annotated source: pharate adult stage P15
annotated property: definition
annotated target: Pharate adult stage P15 begins with the tanning of the tergites and ends with eclosion. Duration at 25 degrees C: approximately 8 hours, 30 minutes. (211.5-220 hours after egg laying; 91.5-100 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

pharate adult stage P15(i)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage P15
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P14
definition: Tanning of the tergites obscures the Malpighian tubules and the 'yellow body'. Legs begin to twitch; fly is able to walk if puparium is removed prematurely. Ptilinum expands by hydrostatic pressure, opening the operculum. Duration at 25 degrees C: approximately 8 hours, 6 minutes. (211.5-219.6 hours after egg laying; 91.5-99.6 hours after puparium formation).
has exact synonym: meconium stage
has exact synonym: pupal stage P15(i)
has OBO namespace: FlyBase_development_CV
id: FBdv:00005367
comment: Temporal ordering number - 750.

Axiom
annotated source: pharate adult stage P15(i)
annotated property: definition
annotated target: Tanning of the tergites obscures the Malpighian tubules and the 'yellow body'. Legs begin to twitch; fly is able to walk if puparium is removed prematurely. Ptilinum expands by hydrostatic pressure, opening the operculum. Duration at 25 degrees C: approximately 8 hours, 6 minutes. (211.5-219.6 hours after egg laying; 91.5-99.6 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P15(i)
annotated property: hasExactSynonym
annotated target: meconium stage
database_cross_reference: FlyBase:FBrf0036849

pharate adult stage P15(ii)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: pharate adult stage P15
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P15(i)
definition: Stage which starts when the operculum opens and ends when eclosion is completed. Duration at 25 degrees C: approximately 24 minutes. (219.6-220 hours after egg laying; 99.6-100 hours after puparium formation).
has exact synonym: eclosion stage
has exact synonym: pupal stage P15(ii)
has OBO namespace: FlyBase_development_CV
id: FBdv:00005368
comment: Temporal ordering number - 760.

Axiom
annotated source: pharate adult stage P15(ii)
annotated property: definition
annotated target: Stage which starts when the operculum opens and ends when eclosion is completed. Duration at 25 degrees C: approximately 24 minutes. (219.6-220 hours after egg laying; 99.6-100 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355

Axiom
annotated source: pharate adult stage P15(ii)
annotated property: hasExactSynonym
annotated target: eclosion stage
database_cross_reference: FlyBase:FBrf0036849

adult stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P15
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P15(ii)
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: P-stage
definition: The stage of the Drosophila life-cycle from eclosion to death.
has OBO namespace: FlyBase_development_CV
id: FBdv:00005369
comment: Temporal ordering number - 770.

Axiom
annotated source: adult stage
annotated property: definition
annotated target: The stage of the Drosophila life-cycle from eclosion to death.
database_cross_reference: FBC:DOS

adult stage A1
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: immature adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P15(ii)
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: P-stage
subclass of: Restriction
  on property: immediately precedes
  some values from: adult stage A2
definition: Newly eclosed adult stage. Animal free of pupal case. Runs rapidly to find site for wing expansion. Wings are folded back and black against a very pale abdomen.
has alternative id: FBdv:00005373
has OBO namespace: FlyBase_development_CV
has related synonym: adult stage I
id: FBdv:00005370
comment: Temporal ordering number - 785. The time at which eclosed flies settle down for wing expansion can vary greatly. If they fail to find a suitable site then expansion can be delayed by several hours.

Axiom
annotated source: adult stage A1
annotated property: definition
annotated target: Newly eclosed adult stage. Animal free of pupal case. Runs rapidly to find site for wing expansion. Wings are folded back and black against a very pale abdomen.
database_cross_reference: FlyBase:FBrf0049147

adult stage A2
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: immature adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: adult stage A1
subclass of: Restriction
  on property: immediately precedes
  some values from: adult stage A3
definition: Stage, shortly after eclosion, during which the wings expand. During wing expansion, the abdomen pulsates and the hind legs stroke the wings vigorously for several minutes at a time. The stage ends when the wings are folded down over the abdomen, which has become broader and shorter, and the wing cuticle has lost its folds. The stage lasts around 15 minutes at 25'C.
has alternative id: FBdv:00005374
has OBO namespace: FlyBase_development_CV
has related synonym: adult stage II
id: FBdv:00005371
comment: Temporal ordering number - 790.

Axiom
annotated source: adult stage A2
annotated property: definition
annotated target: Stage, shortly after eclosion, during which the wings expand. During wing expansion, the abdomen pulsates and the hind legs stroke the wings vigorously for several minutes at a time. The stage ends when the wings are folded down over the abdomen, which has become broader and shorter, and the wing cuticle has lost its folds. The stage lasts around 15 minutes at 25'C.
database_cross_reference: FlyBase:FBrf0049147

pharate adult stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: substage of
  some values from: P-stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pupal stage P7
subclass of: Restriction
  on property: immediately precedes
  some values from: adult stage
subclass of: Restriction
  on property: immediately precedes
  some values from: adult stage A1
subclass of: Restriction
  on property: immediately precedes
  some values from: immature adult stage
definition: The developing adult after pupal-adult apolysis, i.e.- from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion. Duration at 25 degrees C: approximately 55.7 hours (164.3-220 hours after egg laying; 44.3-100 hours after puparium formation).
has OBO namespace: FlyBase_development_CV
id: FBdv:00006011
comment: Temporal ordering number - 625.

Axiom
annotated source: pharate adult stage
annotated property: definition
annotated target: The developing adult after pupal-adult apolysis, i.e.- from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion. Duration at 25 degrees C: approximately 55.7 hours (164.3-220 hours after egg laying; 44.3-100 hours after puparium formation).
database_cross_reference: FlyBase:FBrf0036849
database_cross_reference: FlyBase:FBrf0048355
database_cross_reference: FlyBase:FBrf0049147

adult stage A3
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: immature adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: adult stage A2
subclass of: Restriction
  on property: immediately precedes
  some values from: mature adult stage
definition: Adult stage immediately after wing expansion, during which tanning of the cuticle is completed. This stage lasts approximately 45 minutes at 25'C.
has alternative id: FBdv:00005375
has OBO namespace: FlyBase_development_CV
has related synonym: adult stage III
id: FBdv:00006012
comment: Temporal ordering number - 800.

Axiom
annotated source: adult stage A3
annotated property: definition
annotated target: Adult stage immediately after wing expansion, during which tanning of the cuticle is completed. This stage lasts approximately 45 minutes at 25'C.
database_cross_reference: FlyBase:FBrf0049147

P-stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar larval stage L2
subclass of: Restriction
  on property: immediately preceded by
  some values from: late third instar larval stage
subclass of: Restriction
  on property: immediately precedes
  some values from: adult stage
subclass of: Restriction
  on property: immediately precedes
  some values from: adult stage A1
subclass of: Restriction
  on property: immediately precedes
  some values from: immature adult stage
definition: The stage of the Drosophila life-cycle from the formation of the puparium (beginning of the prepupal stage) to eclosion.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2008-06-05T04:51:40Z
has broad synonym: metamorphosis
has OBO namespace: FlyBase_development_CV
has related synonym: pupal stage
id: FBdv:00007001
comment: Temporal ordering number - 490. DISAMBIGUATION: In Drosophila lab vernacular, the term 'pupal stage' is often used to refer to the entire period from formation of the puparium to eclosion. However, this does not correspond to the standard usage of 'pupal stage' for cyclorrhaphous flies (for discussion see: FBrf0087128). Briefly: formation of the puparium (hardening of the larval cuticle) marks the beginning of the pre-pupal stage. The pupal stage begins following pupal/larval apolysis - detachment of the larval epidermis from the puparium. In Drosophila, the outward sign of the completion of apolysis is the eversion of the head an expulsion of the larval mouthparts (FBrf0036849). We use P-stage to refer to the stage from pupariation to eclosion, and restrict pupal stage to its standard usage.

Axiom
annotated source: P-stage
annotated property: definition
annotated target: The stage of the Drosophila life-cycle from the formation of the puparium (beginning of the prepupal stage) to eclosion.
database_cross_reference: FBC:DOS

third instar larval stage L1
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: late third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: wandering third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar - cleared gut stage
definition: Stage which begins when wandering third instar larva stops crawling. The larva everts its anterior spiracles during this stage.
has OBO namespace: FlyBase_development_CV
id: FBdv:00007004
comment: Temporal ordering number - 470.

Axiom
annotated source: third instar larval stage L1
annotated property: definition
annotated target: Stage which begins when wandering third instar larva stops crawling. The larva everts its anterior spiracles during this stage.
database_cross_reference: FlyBase:FBrf0036849

third instar larval stage L2
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: late third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar larval stage L1
definition: The anterior spiracles are fully everted, with 7-9 finger-like projections. The body shortens, withdrawing three apparent abdominal segments and the larva sticks to its substrate.
has exact synonym: spiracles everted larva
has OBO namespace: FlyBase_development_CV
has related synonym: white prepupa
id: FBdv:00007005
comment: Temporal ordering number - 480.

Axiom
annotated source: third instar larval stage L2
annotated property: definition
annotated target: The anterior spiracles are fully everted, with 7-9 finger-like projections. The body shortens, withdrawing three apparent abdominal segments and the larva sticks to its substrate.
database_cross_reference: FlyBase:FBrf0036849

Axiom
annotated source: third instar larval stage L2
annotated property: hasExactSynonym
annotated target: spiracles everted larva
database_cross_reference: FlyBase:FBrf0036849

Axiom
annotated source: third instar larval stage L2
annotated property: hasRelatedSynonym
annotated target: white prepupa
database_cross_reference: FlyBase:FBrf0036849

late third instar larval stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: early third instar larval stage
definition: Third instar larva from the beginning of wandering to the beginning of puparium formation.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2008-12-11T01:19:53Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007007
comment: Temporal ordering number - 450.

Axiom
annotated source: late third instar larval stage
annotated property: definition
annotated target: Third instar larva from the beginning of wandering to the beginning of puparium formation.
database_cross_reference: FBC:DOS

developmental process
type: Class
subclass of: biological process
definition: A biological process whose specific outcome is the progression of an integrated living unit (an anatomical structure or an entire organism) over time from an initial condition to a later condition.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2009-10-01T05:56:42Z
database_cross_reference: GO:0032502
has OBO namespace: FlyBase_development_CV
id: FBdv:00007009

Axiom
annotated source: developmental process
annotated property: definition
annotated target: A biological process whose specific outcome is the progression of an integrated living unit (an anatomical structure or an entire organism) over time from an initial condition to a later condition.
database_cross_reference: GO:0032502

embryonic cycle
type: Class
subclass of: biological process
subclass of: GO_0045448
definition: A cycle of nuclear division during the embryogenesis of Drosophila melanogaster. The first 13 cycles are synchronous throughout the embryo and occur their timing relative to other developmental processes is invariant. Later nuclear division cycles are asynchronous across the embryo although may be more locally synchronized.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2009-10-01T05:57:41Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007011

Axiom
annotated source: embryonic cycle
annotated property: definition
annotated target: A cycle of nuclear division during the embryogenesis of Drosophila melanogaster. The first 13 cycles are synchronous throughout the embryo and occur their timing relative to other developmental processes is invariant. Later nuclear division cycles are asynchronous across the embryo although may be more locally synchronized.
database_cross_reference: FlyBase:FBrf0049535
database_cross_reference: FlyBase:FBrf0089570

life stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: Drosophila life
definition: A temporal subdivision of a Drosophila life, delimited by major transitions in the circumstances of the organism, such as: fertilization; hatching; pupal ecdysis; eclosion.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2009-10-01T05:59:22Z
has exact synonym: life cycle stage
has OBO namespace: FlyBase_development_CV
id: FBdv:00007012

Axiom
annotated source: life stage
annotated property: definition
annotated target: A temporal subdivision of a Drosophila life, delimited by major transitions in the circumstances of the organism, such as: fertilization; hatching; pupal ecdysis; eclosion.
database_cross_reference: FBC:DOS

age
type: Class
subclass of: BFO_0000003
definition: Temporal subdivision of life based on time elapsed since some key developmental transition, such as fertilization, hatching or eclosion.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2010-09-29T12:25:36Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007013

Axiom
annotated source: age
annotated property: definition
annotated target: Temporal subdivision of life based on time elapsed since some key developmental transition, such as fertilization, hatching or eclosion.
database_cross_reference: FBC:DOS

adult age in days
type: Class
subclass of: age
definition: Temporal subdivision of adulthood in days post-eclosion.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2010-09-29T12:28:05Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007014

Axiom
annotated source: adult age in days
annotated property: definition
annotated target: Temporal subdivision of adulthood in days post-eclosion.
database_cross_reference: FBC:DOS

embryonic stage 17(i)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 17
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 16
definition: The first two hours of embryonic stage 17 at 25'C. (Approximately 16-18 hours at 25'C after egg laying).
contributor: http://orcid.org/0000-0002-7073-9172
date: 2011-04-26T11:57:15Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007015
comment: Temporal ordering number - 391. Should not be used to stage embryos whose development is at temperatures other than 25'C.

Axiom
annotated source: embryonic stage 17(i)
annotated property: definition
annotated target: The first two hours of embryonic stage 17 at 25'C. (Approximately 16-18 hours at 25'C after egg laying).
database_cross_reference: FBC:DOS

embryonic stage 17(ii)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 17
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 17(i)
definition: Hours 2-4 of embryonic stage 17 at 25'C. (Approximately 18-20 hours at 25'C after egg laying).
contributor: http://orcid.org/0000-0002-7073-9172
date: 2011-04-26T12:00:15Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007016
comment: Temporal ordering number - 392. Should not be used to stage embryos whose development is at temperatures other than 25'C.

Axiom
annotated source: embryonic stage 17(ii)
annotated property: definition
annotated target: Hours 2-4 of embryonic stage 17 at 25'C. (Approximately 18-20 hours at 25'C after egg laying).
database_cross_reference: FBC:DOS

embryonic stage 17(iii)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 17
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 17(ii)
definition: Hours 4-6 of embryonic stage 17 at 25'C. (Approximately 20-22 hours at 25'C after egg laying).
contributor: http://orcid.org/0000-0002-7073-9172
date: 2011-04-26T12:01:18Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007017
comment: Temporal ordering number - 393. Should not be used to stage embryos whose development is at temperatures other than 25'C.

Axiom
annotated source: embryonic stage 17(iii)
annotated property: definition
annotated target: Hours 4-6 of embryonic stage 17 at 25'C. (Approximately 20-22 hours at 25'C after egg laying).
database_cross_reference: FBC:DOS

embryonic stage 17(iv)
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: embryonic stage 17
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 17(iii)
definition: Hours 6-8 (the last two hours) of embryonic stage 17 at 25'C. (Approximately 22-24 hours at 25'C after egg laying).
contributor: http://orcid.org/0000-0002-7073-9172
date: 2011-04-26T12:03:14Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007018
comment: Temporal ordering number - 394. Should not be used to stage embryos whose development is at temperatures other than 25'C.

Axiom
annotated source: embryonic stage 17(iv)
annotated property: definition
annotated target: Hours 6-8 (the last two hours) of embryonic stage 17 at 25'C. (Approximately 22-24 hours at 25'C after egg laying).
database_cross_reference: FBC:DOS

third instar - uncleared gut stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: wandering third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: early third instar larval stage
definition: The substage of the wandering third instar larval stage, prior to the beginning of clearance of the gut.
has OBO namespace: FlyBase_development_CV
id: FBdv:00007019
comment: Temporal ordering number - 462. This is commonly assayed by adding 0.5% bromophenol blue to the food and looking for wandering third instar larvae with the same color guts (dark blue) as feeding larvae (Andres and Thummel, 1994). Larvae at this stage are in chromosomal puff stage 1 (Andres and Thummel, 1994).

Axiom
annotated source: third instar - uncleared gut stage
annotated property: definition
annotated target: The substage of the wandering third instar larval stage, prior to the beginning of clearance of the gut.
database_cross_reference: FlyBase:FBrf0076598

third instar - partially cleared gut stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: wandering third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar - uncleared gut stage
definition: The substage of the wandering third instar larval stage when the larva has partially cleared its gut contents.
has OBO namespace: FlyBase_development_CV
id: FBdv:00007020
comment: Temporal ordering number - 465. This is commonly assayed by adding 0.5% bromophenol blue to the food and looking for wandering third instar larvae with lighter colored guts (light blue) than feeding larvae (Andres and Thummel, 1994). Larvae at this stage are mainly in chromosomal puff stages 2-7 (Andres and Thummel, 1994).

Axiom
annotated source: third instar - partially cleared gut stage
annotated property: definition
annotated target: The substage of the wandering third instar larval stage when the larva has partially cleared its gut contents.
database_cross_reference: FlyBase:FBrf0076598

third instar - cleared gut stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: wandering third instar larval stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: third instar - partially cleared gut stage
definition: The substage of the wandering third instar larval stage when the larva has cleared its gut contents.
has OBO namespace: FlyBase_development_CV
id: FBdv:00007021
comment: Temporal ordering number - 467. This is commonly assayed by adding 0.5% bromophenol blue to the food and looking for wandering third instar larvae with guts lacking any blue stain (Andres and Thummel, 1994). Larvae at this stage are mainly in chromosomal puff stages 7-9 and pupate within 1-6 hours (Andres and Thummel, 1994.

Axiom
annotated source: third instar - cleared gut stage
annotated property: definition
annotated target: The substage of the wandering third instar larval stage when the larva has cleared its gut contents.
database_cross_reference: FlyBase:FBrf0076598

biological process
type: Class
subclass of: BFO_0000003
definition: The execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module.
database_cross_reference: GO:0008150
has OBO namespace: FlyBase_development_CV
id: FBdv:00007024

Axiom
annotated source: biological process
annotated property: definition
annotated target: The execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module.
database_cross_reference: GO:0008150

immature adult stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: substage of
  some values from: day 0 of adulthood
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: P-stage
subclass of: Restriction
  on property: immediately precedes
  some values from: mature adult stage
definition: The developmental stage that lasts from eclosion of the adult from the pupal case until tanning is complete (the end of adult stage A3).
contributor: http://orcid.org/0000-0002-7073-9172
date: 2013-01-08T20:06:59Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007025
comment: Temporal ordering number - 782.

Axiom
annotated source: immature adult stage
annotated property: definition
annotated target: The developmental stage that lasts from eclosion of the adult from the pupal case until tanning is complete (the end of adult stage A3).
database_cross_reference: FBC:DOS

mature adult stage
type: Class
subclass of: life stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: adult stage A3
subclass of: Restriction
  on property: immediately preceded by
  some values from: immature adult stage
definition: Life stage from the end of adult stage A3, when tanning is complete, to death.
contributor: http://orcid.org/0000-0002-7073-9172
date: 2013-01-10T13:03:54Z
has OBO namespace: FlyBase_development_CV
id: FBdv:00007026

Axiom
annotated source: mature adult stage
annotated property: definition
annotated target: Life stage from the end of adult stage A3, when tanning is complete, to death.
database_cross_reference: FBC:DOS

day 0 of adulthood
type: Class
subclass of: adult age in days
subclass of: Restriction
  on property: substage of
  some values from: adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P15
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage P15(ii)
subclass of: Restriction
  on property: immediately preceded by
  some values from: pharate adult stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: P-stage
definition: The day of eclosion.
has OBO namespace: FlyBase_development_CV
id: FBdv:00007075
comment: Temporal ordering number - 780.

Axiom
annotated source: day 0 of adulthood
annotated property: definition
annotated target: The day of eclosion.
database_cross_reference: FBC:DOS

early extended germ band stage
type: Class
subclass of: developmental stage
subclass of: Restriction
  on property: substage of
  some values from: extended germ band stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: gastrula stage
subclass of: Restriction
  on property: immediately preceded by
  some values from: embryonic stage 8
definition: A collective term for stages 9 and 10.
has OBO namespace: FlyBase_development_CV
id: FBdv:00014201
comment: Temporal ordering number - 270.

Axiom
annotated source: early extended germ band stage
annotated property: definition
annotated target: A collective term for stages 9 and 10.
database_cross_reference: FBC:DOS

Drosophila melanogaster
type: Class
subclass of: invertebrate
IAO_0000111: Drosophila melanogaster
IAO_0000118: Sophophora melanogaster
IAO_0000118: fruit fly
IAO_0000412: ncbitaxon.owl

planned process
type: Class
equivalent class: Restriction
  on property: realizes
  some values from: Restriction
    on property: concretizes
    some values from: IAO_0000104
subclass of: BFO_0000015
IAO_0000111: planned process
IAO_0000112: Injecting mice with a vaccine in order to test its efficacy
IAO_0000114: IAO_0000122
definition: A process that realizes a plan which is the concretization of a plan specification.
IAO_0000116: 'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)
IAO_0000116: We are only considering successfully completed planned processes. A plan may be modified, and details added during execution. For a given planned process, the associated realized plan specification is the one encompassing all changes made during execution. This means that all processes in which an agent acts towards achieving some objectives is a planned process.
IAO_0000117: Bjoern Peters
IAO_0000119: branch derived
IAO_0000232: 6/11/9: Edited at workshop. Used to include: is initiated by an agent
IAO_0000232: This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call)

specimen role
type: Class
subclass of: BFO_0000023
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: BFO_0000040
    intersection of: Restriction
      on property: is specified output of
      some values from: specimen collection process
IAO_0000111: specimen role
IAO_0000112: liver section; a portion of a culture of cells; a nemotode or other animal once no longer a subject (generally killed); portion of blood from a patient.
IAO_0000114: IAO_0000122
definition: A role borne by a material entity that is obtained during a specimen collection process and that can be realized by performing measurements or observations on the specimen.
IAO_0000116: 22Jun09. The definition includes whole organisms, and can include a human. The link between specimen role and study subject role has been removed. A specimen taken as part of a case study is not considered to be a population representative, while a specimen taken as representing a population, e.g. person taken from a cohort, blood specimen taken from an animal) would be considered a population representative and would also bear material sample role.
IAO_0000116: Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.
IAO_0000116: blood taken from animal: animal continues in study, whereas blood has role specimen. something taken from study subject, leaves the study and becomes the specimen.
IAO_0000116: parasite example - when parasite in people we study people, people are subjects and parasites are specimen - when parasite extracted, they become subject in the following study specimen can later be subject.
IAO_0000117: GROUP: Role Branch
IAO_0000119: OBI
IAO_0000233: https://github.com/obi-ontology/obi/issues/1013

specimen collection process
type: Class
equivalent class: Class
  intersection of: planned process
  intersection of: Restriction
    on property: achieves_planned_objective
    some values from: specimen collection objective
subclass of: planned process
subclass of: Restriction
  on property: has specified input
  some values from: BFO_0000040
subclass of: Restriction
  on property: has specified output
  some values from: specimen
IAO_0000111: specimen collection process
IAO_0000112: drawing blood from a patient for analysis, collecting a piece of a plant for depositing in a herbarium, buying meat from a butcher in order to measure its protein content in an investigation, collecting a stone from a site
IAO_0000114: IAO_0000122
definition: A planned process with the objective to obtain a material entity for potential use as an input upon which measurements or observations are performed.
IAO_0000116: Definition updated following discussion on 2024-10-07 OBI dev call.
IAO_0000116: Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation.
IAO_0000116: Philly2013: A specimen collection can have as part a material entity acquisition, such as ordering from a bank. The distinction is that specimen collection necessarily involves the creation of a specimen role. However ordering cell lines cells from ATCC for use in an investigation is NOT a specimen collection, because the cell lines already have a specimen role.
IAO_0000116: Philly2013: The specimen_role for the specimen is created during the specimen collection process.
IAO_0000116: label changed to 'specimen collection process' on 10/27/2014, details see tracker: http://sourceforge.net/p/obi/obi-terms/716/
IAO_0000117: Bjoern Peters
IAO_0000118: specimen collection
IAO_0000232: 5/31/2012: This process is not necessarily an acquisition, as specimens may be collected from materials already in posession
IAO_0000232: 6/9/09: used at workshop

specimen collection objective
type: Class
subclass of: IAO_0000005
IAO_0000111: specimen collection objective
IAO_0000112: The objective to collect bits of excrement in the rainforest. The objective to obtain a blood sample from a patient.
IAO_0000114: IAO_0000122
definition: A objective specification that is fulfilled by obtaining a material entity for potential use as an input upon which measurements or observations are performed.
IAO_0000116: OBI recommends against subclassing this term in order to avoid further parallel hierarchies between this term and specimen collection process.
IAO_0000117: Bjoern Peters
IAO_0000119: Bjoern Peters

specimen from organism
type: Class
equivalent class: Class
  intersection of: specimen
  intersection of: Restriction
    on property: is specified output of
    some values from: Class
      intersection of: specimen collection process
      intersection of: Restriction
        on property: has specified input
        some values from: Class
subclass of: specimen
IAO_0000111: specimen from organism
IAO_0000114: IAO_0000122
definition: A specimen that derives from an anatomical part or substance arising from an organism. Examples of tissue specimen include tissue, organ, physiological system, blood, or body location (arm).
IAO_0000117: PERSON: Chris Stoeckert, Jie Zheng
IAO_0000118: tissue specimen
IAO_0000119: MO_954 organism_part

collection of specimens
type: Class
equivalent class: Class
  intersection of: BFO_0000040
  intersection of: Restriction
    on property: has member
    all values from: specimen
subclass of: BFO_0000040
IAO_0000111: collection of specimens
IAO_0000112: Blood cells collected from multiple donors over the course of a study.
IAO_0000114: IAO_0000125
definition: A material entity that has two or more specimens as its parts.
IAO_0000116: Details see tracker: https://sourceforge.net/p/obi/obi-terms/778/
IAO_0000117: Person: Chris Stoeckert, Jie Zheng
IAO_0000119: OBIB, OBI

organism
type: Class
equivalent class: Class
  union of: NCBITaxon_10239
  union of: NCBITaxon 2
  union of: NCBITaxon 2157
  union of: NCBITaxon 2759
subclass of: BFO_0000040
IAO_0000111: organism
IAO_0000112: animal
IAO_0000112: fungus
IAO_0000112: plant
IAO_0000112: virus
IAO_0000114: IAO_0000122
definition: A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.
IAO_0000116: 10/21/09: This is a placeholder term, that should ideally be imported from the NCBI taxonomy, but the high level hierarchy there does not suit our needs (includes plasmids and 'other organisms')
IAO_0000116: 13-02-2009: OBI doesn't take position as to when an organism starts or ends being an organism - e.g. sperm, foetus. This issue is outside the scope of OBI.
IAO_0000117: GROUP: OBI Biomaterial Branch
IAO_0000119: WEB: http://en.wikipedia.org/wiki/Organism

specimen
type: Class
equivalent class: Class
  intersection of: BFO_0000040
  intersection of: Restriction
    on property: has role
    some values from: specimen role
subclass of: BFO_0000040
IAO_0000111: specimen
IAO_0000112: Biobanking of blood taken and stored in a freezer for potential future investigations stores specimen; collecting a stone from a site.
IAO_0000114: IAO_0000122
definition: A material entity that is collected for potential use as an input upon which measurements or observations are performed.
IAO_0000117: PERSON: James Malone
IAO_0000117: PERSON: Philippe Rocca-Serra
IAO_0000119: GROUP: OBI Biomaterial Branch
IAO_0000233: https://github.com/obi-ontology/obi/issues/1013

morphology
type: Class
subclass of: quality
definition: A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
IAO_0000412: pato.owl
has OBO namespace: quality
id: PATO:0000051
in subset: attribute slim

structure
type: Class
subclass of: morphology
definition: A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
IAO_0000412: pato.owl
has alternative id: PATO:0001452
has broad synonym: conformation
has exact synonym: relational structural quality
has OBO namespace: quality
id: PATO:0000141
in subset: attribute slim

fasciculated
type: Class
subclass of: structure
definition: A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve.
IAO_0000412: pato.owl
RO_0002604: PATO_0001959
has exact synonym: fascicled
has OBO namespace: quality
id: PATO:0001861
in subset: mpath slim
in subset: value slim

system
type: Class
subclass of: BFO_0000040
definition: A material entity consisting of multiple components that are causally integrated.
IAO_0000116: May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43
IAO_0000117: https://orcid.org/0000-0002-6601-2165
IAO_0000119: http://www.jbiomedsem.com/content/4/1/43

anatomical structure
type: Class
subclass of: anatomical entity
definition: Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome.
IAO_0000412: uberon.owl
RO_0002175: NCBITaxon_33090
RO_0002175: NCBITaxon_33208
RO_0002175: NCBITaxon 4751
database_cross_reference: AAO:0010825
database_cross_reference: AEO:0000003
database_cross_reference: BILA:0000003
database_cross_reference: CARO:0000003
database_cross_reference: EHDAA2:0003003
database_cross_reference: EMAPA:0
database_cross_reference: FBbt:00007001
database_cross_reference: FMA:305751
database_cross_reference: FMA:67135
database_cross_reference: GAID:781
database_cross_reference: HAO:0000003
database_cross_reference: MA:0003000
database_cross_reference: MESH:D000825
database_cross_reference: SCTID:362889002
database_cross_reference: TAO:0000037
database_cross_reference: TGMA:0001823
database_cross_reference: VHOG:0001759
database_cross_reference: XAO:0003000
database_cross_reference: ZFA:0000037
database_cross_reference: http://dbpedia.org/ontology/AnatomicalStructure
has exact synonym: biological structure
has exact synonym: connected biological structure
has OBO namespace: uberon
id: UBERON:0000061
in subset: common anatomy
in subset: human subset
in subset: mouse subset
in subset: upper level

anatomical entity
type: Class
equivalent class: Restriction
  on property: is anatomical entity
  has self: true
subclass of: assay biology component
definition: Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species.
IAO_0000412: uberon.owl
RO_0002175: NCBITaxon_33090
RO_0002175: NCBITaxon_33208
RO_0002175: NCBITaxon 4751
database_cross_reference: AAO:0010841
database_cross_reference: AEO:0000000
database_cross_reference: BFO:0000004
database_cross_reference: BILA:0000000
database_cross_reference: BIRNLEX:6
database_cross_reference: CARO:0000000
database_cross_reference: EHDAA2:0002229
database_cross_reference: FBbt:10000000
database_cross_reference: FMA:62955
database_cross_reference: HAO:0000000
database_cross_reference: MA:0000001
database_cross_reference: NCIT:C12219
database_cross_reference: TAO:0100000
database_cross_reference: TGMA:0001822
database_cross_reference: UMLS:C1515976
database_cross_reference: WBbt:0000100
database_cross_reference: XAO:0000000
database_cross_reference: ZFA:0100000
has OBO namespace: uberon
id: UBERON:0001062
in subset: common anatomy
in subset: human subset
in subset: mouse subset
in subset: upper level

eukaryote
type: Class
subclass of: cellular organisms
definition: This includes fungi, vertebrates and invertebrates. Eukaryotic cells have a well-defined nucleus and membrane enveloped organelles namely, mitochondria, endoplasmic reticulum, golgi apparatus, and lysosomes.

invertebrate
type: Class
subclass of: metazoa
definition: These animals lack a vertebral column and many of which are used as model organisms in HTS screening including Drosophila, C.elegans, sea urchin, etc.

organism
type: Class
subclass of: assay biology component
definition: The organism related to the target / meta-target of the bioassay. It includes both bacterium and eukaryote.

cellular organisms
type: Class
subclass of: organism
definition: This includes all organisms which are made up of cells, e.g. bacteria, plants and animals.

metazoa
type: Class
subclass of: eukaryote
definition: Metazoa comprises of animals, which are multicellular eukaryotic organisms. This includes those having a vertebral column (e.g. fish, frog, snake, bird, human) and those that do not (e.g. worm, fly, star fish, etc).

quality
type: Class

assay biology component
type: Class

scRNAseq_2023_Saavedra
type: NamedIndividual
type: project
type: Restriction
  on property: is specified output of
  some values from: single-nucleus RNA-Seq
filtered gene count: 1726
total gene count: 10932
node label: DataSet
definition: Single-cell RNA-seq study of the adult thorax
licence: VFBlicense CC BY 4 0
references: FBrf0257286
database_cross_reference: scExpressionAtlas

Axiom
annotated source: scRNAseq_2023_Saavedra
annotated property: database_cross_reference
annotated target: scExpressionAtlas
accession: E-GEOD-227038

scRNAseq_2023_Saavedra_WT
type: NamedIndividual
type: biosample
type: Restriction
  on property: part of
  some values from: male organism
type: Restriction
  on property: overlaps
  some values from: adult thorax
type: Restriction
  on property: existence overlaps
  some values from: adult stage
input of: scRNAseq_2023_Saavedra_WT_seq
node label: Sample
definition: Dissociated cells from wild-type adult male thoraces
source: scRNAseq_2023_Saavedra

scRNAseq_2023_Saavedra_WT_seq
type: NamedIndividual
type: assay
type: Restriction
  on property: has assay method
  some values from: 10x sequencing
has input: scRNAseq_2023_Saavedra_WT
node label: Assay
definition: Single-nucleus RNA-seq of dissociated cells from wild-type adult male thoraces
source: scRNAseq_2023_Saavedra

scRNAseq_2023_Saavedra_WT_seq_clustering
type: NamedIndividual
type: cell clustering analysis
has part: scRNAseq_2023_Saavedra_WT
has part: scRNAseq_2023_Saavedra_WT_seq
definition: Clustering analysis of dissociated cells from wild-type adult male thoraces
source: scRNAseq_2023_Saavedra

scRNAseq_2023_Saavedra_WT_seq_clustering_muscle_cells
type: NamedIndividual
type: transcriptional cell cluster
type: Restriction
  on property: composed primarily of
  some values from: adult muscle cell
type: Restriction
  on property: existence overlaps
  some values from: adult stage
part of: scRNAseq_2023_Saavedra_WT_seq_clustering
cell count: 176
filtered gene count: 475
total gene count: 5996
node label: Cluster
definition: Clustering analysis of dissociated cells from wild-type adult male thoraces, muscle cells cluster
source: scRNAseq_2023_Saavedra

scRNAseq_2023_Saavedra_WT_seq_clustering_VNC_neurons
type: NamedIndividual
type: transcriptional cell cluster
type: Restriction
  on property: composed primarily of
  some values from: adult VNC neuron
type: Restriction
  on property: existence overlaps
  some values from: adult stage
part of: scRNAseq_2023_Saavedra_WT_seq_clustering
cell count: 241
filtered gene count: 516
total gene count: 7121
node label: Cluster
definition: Clustering analysis of dissociated cells from wild-type adult male thoraces, VNC neurons cluster
source: scRNAseq_2023_Saavedra

scRNAseq_2023_Saavedra_WT_seq_clustering_indirect_flight_muscle_cells
type: NamedIndividual
type: transcriptional cell cluster
type: Restriction
  on property: composed primarily of
  some values from: indirect flight muscle cell
type: Restriction
  on property: existence overlaps
  some values from: adult stage
part of: scRNAseq_2023_Saavedra_WT_seq_clustering
cell count: 666
filtered gene count: 444
total gene count: 8292
node label: Cluster
definition: Clustering analysis of dissociated cells from wild-type adult male thoraces, indirect flight muscle cells cluster
source: scRNAseq_2023_Saavedra

scRNAseq_2023_Saavedra_WT_seq_clustering_fat_cells
type: NamedIndividual
type: transcriptional cell cluster
type: Restriction
  on property: composed primarily of
  some values from: adult fat cell
type: Restriction
  on property: existence overlaps
  some values from: adult stage
part of: scRNAseq_2023_Saavedra_WT_seq_clustering
cell count: 558
filtered gene count: 598
total gene count: 8572
node label: Cluster
definition: Clustering analysis of dissociated cells from wild-type adult male thoraces, fat cells cluster
source: scRNAseq_2023_Saavedra

scRNAseq_2023_Saavedra_WT_seq_clustering_VNC_perineurial_glial_cells
type: NamedIndividual
type: transcriptional cell cluster
type: Restriction
  on property: composed primarily of
  some values from: adult VNC perineurial glial cell
type: Restriction
  on property: existence overlaps
  some values from: adult stage
part of: scRNAseq_2023_Saavedra_WT_seq_clustering
cell count: 63
filtered gene count: 853
total gene count: 6380
node label: Cluster
definition: Clustering analysis of dissociated cells from wild-type adult male thoraces, VNC perineurial glial cells cluster
source: scRNAseq_2023_Saavedra

scRNAseq_2023_Saavedra_WT_seq_clustering_salivary_gland_secretory_cells
type: NamedIndividual
type: transcriptional cell cluster
type: Restriction
  on property: composed primarily of
  some values from: adult salivary gland secretory cell
type: Restriction
  on property: existence overlaps
  some values from: adult stage
part of: scRNAseq_2023_Saavedra_WT_seq_clustering
cell count: 74
filtered gene count: 716
total gene count: 5314
node label: Cluster
definition: Clustering analysis of dissociated cells from wild-type adult male thoraces, salivary gland secretory cells cluster
source: scRNAseq_2023_Saavedra

scRNAseq_2023_Saavedra_WT_seq_clustering_tracheocytes
type: NamedIndividual
type: transcriptional cell cluster
type: Restriction
  on property: composed primarily of
  some values from: adult tracheocyte
type: Restriction
  on property: existence overlaps
  some values from: adult stage
part of: scRNAseq_2023_Saavedra_WT_seq_clustering
cell count: 28
filtered gene count: 488
total gene count: 2967
node label: Cluster
definition: Clustering analysis of dissociated cells from wild-type adult male thoraces, tracheocytes cluster
source: scRNAseq_2023_Saavedra

scRNAseq_2023_Saavedra_WT_seq_clustering_alary_muscle_cells
type: NamedIndividual
type: transcriptional cell cluster
type: Restriction
  on property: composed primarily of
  some values from: adult alary muscle cell
type: Restriction
  on property: existence overlaps
  some values from: adult stage
part of: scRNAseq_2023_Saavedra_WT_seq_clustering
cell count: 87
filtered gene count: 476
total gene count: 6171
node label: Cluster
definition: Clustering analysis of dissociated cells from wild-type adult male thoraces, alary muscle cells cluster
source: scRNAseq_2023_Saavedra

scRNAseq_2023_Saavedra_WT_seq_clustering_epithelial_cells
type: NamedIndividual
type: transcriptional cell cluster
type: Restriction
  on property: composed primarily of
  some values from: adult epithelial cell
type: Restriction
  on property: existence overlaps
  some values from: adult stage
part of: scRNAseq_2023_Saavedra_WT_seq_clustering
cell count: 58
filtered gene count: 418
total gene count: 4163
node label: Cluster
definition: Clustering analysis of dissociated cells from wild-type adult male thoraces, epithelial cells cluster
source: scRNAseq_2023_Saavedra

scRNAseq_2023_Saavedra_WT_seq_clustering_VNC_cell_body_glial_cells
type: NamedIndividual
type: transcriptional cell cluster
type: Restriction
  on property: composed primarily of
  some values from: adult VNC cell body glial cell
type: Restriction
  on property: existence overlaps
  some values from: adult stage
part of: scRNAseq_2023_Saavedra_WT_seq_clustering
cell count: 26
filtered gene count: 445
total gene count: 2714
node label: Cluster
definition: Clustering analysis of dissociated cells from wild-type adult male thoraces, VNC cell body glial cells cluster
source: scRNAseq_2023_Saavedra

scRNAseq_2023_Saavedra_WT_seq_clustering_hemocytes
type: NamedIndividual
type: transcriptional cell cluster
type: Restriction
  on property: composed primarily of
  some values from: adult hemocyte
type: Restriction
  on property: existence overlaps
  some values from: adult stage
part of: scRNAseq_2023_Saavedra_WT_seq_clustering
cell count: 60
filtered gene count: 426
total gene count: 4217
node label: Cluster
definition: Clustering analysis of dissociated cells from wild-type adult male thoraces, hemocytes cluster
source: scRNAseq_2023_Saavedra

FBrf0257286
type: NamedIndividual
node label: pub